VHK896
Library VH
(Link to library)
Clone ID VHK896
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13591-1
Original site URL
Representative seq. ID VHK896P
(Link to Original site)
Representative DNA sequence
>VHK896 (VHK896Q) /CSM/VH/VHK8-D/VHK896Q.Seq.d/
ATAAACCATTGTGATATTACAAACATATAATTTTTTAAAATGCCTTTAAACCTTGTTGCT
AGAAAATCATTAAGAGATAATGAAGAACACTTAAATAAAGCACATGAAGAAATCAAAAAT
GCTTTAAATGGTGAAGAATGGATTATTGAATTTGATTGGGATGCCATTTTCGATAAAGTT
GATGAACATGTTAAAAAACAATTAGGTGAAGTATTTTATAAAAATTTATGTCCAAATATT
AGTAAATGTATTGTAAATGCATCAAAAGATGAATTAACTAAAGAATCAATCATTAATGCA
AATACTGCTAAAAAGATTGTATTAATTGTTAATGAAGATGCCAAGAATTCATCCTATTGG
AAGTATGCATTTAATGGTGGTCAATTAAATCTTTTATTCAAGAAAGGTTGTAATAATATT
ACTGAAGCTGGTAATTTCGAATTATATAAAGTGATTCCAAGTGAAGGTGCTTATAGTTTA
CCAACTCGTCTTAATATGAAAAAGAATCAAGAAAGATTTGAACTTGCATTCGAAAGAATT
AXXXXXXXXXXGATTTCATTAAAGTCCTTCCAGTACCAGGNGTTTTNTCATTAGCTGCTA
AAATCAATTTGAAAGAGANCCAAGAGAAATTCGATACNGCTTTTGAAAGAATTAAAGAGG
TCACTAAAGTAGATTGGTCCTATGATGAGCAATCATTGGAAACTGTTTATCCAGCACTTG
AAGAAAGAAATAAAGAAAGAATTGGTGACTTATTCCAAGAGATTATTAAATATGTCGCTG
ATAATATCGTTAAACGTTGTAAAGAGGATATGGTTTTAGAAAGTTTCCTCGAAGCAACTT
CAAATGCAAAGATTGTTTTCCGTCACAATGCCAAAGCAAACGGTTATTGGAATTGGAGTT
TTGAAAACAATGATTTAGTAATCACCTTCAAATCAATTTGCAATGTTAGTGATAATGCAA
ACTTTGATTTCATTAAAATTTTACCATCACCAGGTGTACTCACTTTAGCCTCTAGAATCA
ATTTGAGAGAGAATCAAGAGAAAATCAATGAATCTTTCGAAAAGATTAAAGAAGTCTTGG
GTAATGATTGGACTTATGATGAATCTTCAATCGAACAAGTTTATCCAAAATTAGAAGAAA
ATAATAAACCACGTGTTGGTGATGTCTTTGCTGAAATCATTCGTTACATCAGTCAAAATA
TCGTTAAAAGATGTAAAGATGATGATATGGTCAAAGAAGGTTTCGTTGAAGCAACTCAAA
ATTGTAAAATCGTCTTCCAATTTGTTGAAAAACAAAGTTCTTATTGGGTTTGGAAATTCG
ATGGTGGTAATTTAGTCGTATCATTCAAATCAATTTGTAATACTAGTGATAATGCAAATT
TCAATTTGAAGCTCTCCTTTAAAATTAANAAAANAA
sequence update 2002.10.25
Translated Amino Acid sequence
inhcditni*FFKMPLNLVARKSLRDNEEHLNKAHEEIKNALNGEEWIIEFDWDAIFDKV
DEHVKKQLGEVFYKNLCPNISKCIVNASKDELTKESIINANTAKKIVLIVNEDAKNSSYW
KYAFNGGQLNLLFKKGCNNITEAGNFELYKVIPSEGAYSLPTRLNMKKNQERFELAFERI
---

---DFIKVLPVPGVXSLAAKINLKEXQEKFDTAFERIKEVTKVDWSYDEQSLETVYPALE
ERNKERIGDLFQEIIKYVADNIVKRCKEDMVLESFLEATSNAKIVFRHNAKANGYWNWSF
ENNDLVITFKSICNVSDNANFDFIKILPSPGVLTLASRINLRENQEKINESFEKIKEVLG
NDWTYDESSIEQVYPKLEENNKPRVGDVFAEIIRYISQNIVKRCKDDDMVKEGFVEATQN
CKIVFQFVEKQSSYWVWKFDGGNLVVSFKSICNTSDNANFNLKLSFKIXKX


Translated Amino Acid sequence (All Frames)
Frame A:
inhcditni*FFKMPLNLVARKSLRDNEEHLNKAHEEIKNALNGEEWIIEFDWDAIFDKV
DEHVKKQLGEVFYKNLCPNISKCIVNASKDELTKESIINANTAKKIVLIVNEDAKNSSYW
KYAFNGGQLNLLFKKGCNNITEAGNFELYKVIPSEGAYSLPTRLNMKKNQERFELAFERI
---

---DFIKVLPVPGVXSLAAKINLKEXQEKFDTAFERIKEVTKVDWSYDEQSLETVYPALE
ERNKERIGDLFQEIIKYVADNIVKRCKEDMVLESFLEATSNAKIVFRHNAKANGYWNWSF
ENNDLVITFKSICNVSDNANFDFIKILPSPGVLTLASRINLRENQEKINESFEKIKEVLG
NDWTYDESSIEQVYPKLEENNKPRVGDVFAEIIRYISQNIVKRCKDDDMVKEGFVEATQN
CKIVFQFVEKQSSYWVWKFDGGNLVVSFKSICNTSDNANFNLKLSFKIXKX

Frame B:
*tivilqtynflkcl*tlllenh*eimknt*ikhmkkskml*mvkngllnligmpfsikl
mnmlknn*vkyfikiyvqilvnvl*mhqkmn*lknqslmqillkrly*llmkmprihpig
smhlmvvn*ifysrkvviillklvisnyik*fqvkvlivyqlvli*krikkdlnlhskel
---

---islksfqyqxfxh*llksi*krxkrnsixllkelkrslk*igpmmsnhwklfiqhlk
keikkelvtyskrllnmsliislnvvkriwf*kvsskqlqmqrlfsvtmpkqtvigigvl
ktmi**spsnqfamlvimqtlislkfyhhqvysl*plesi*erikrksmnlskrlkkswv
miglmmnlqsnkfiqn*kkiinhvlvmsllksfvtsvkislkdvkmmiwskkvslkqlki
vksssnllknkvligfgnsmvvi*syhsnqfvilvimqisi*ssplklxkx

Frame C:
kpl*yykhiif*nafkpcc*kiikr**rtlk*st*rnqkcfkw*rmdy*i*lgchfr*s*
*tc*ktir*sil*kfmsky**myckcikr*in*rinh*ckyc*kdcinc**rcqefille
vci*wwsiksfiqerl**yy*sw*frii*sdsk*rcl*ftnss*yekesrki*tcirkn-
--

---fh*spsstrxfxisc*nqferxpreiryxf*kn*rgh*srlvl**aiignclsst*r
kk*rknw*liprdy*icr**yr*tl*rgygfrkfprsnfkckdcfpsqcqskrllelef*
kq*fsnhlqinlqc***ckl*fh*nftitrcthfsl*nqferesrenq*ifrkd*rslg*
*ldl**ifnrtslskirrk**ttcw*clc*nhslhqskyr*km*r**ygqrrfr*snskl
*nrlpic*ktkfllgleirww*fsriiqinl*y***ckfqfeall*n*xx

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHK896 (VHK896Q) /CSM/VH/VHK8-D/VHK896Q.Seq.d/ 2712 0.0
VHJ523 (VHJ523Q) /CSM/VH/VHJ5-A/VHJ523Q.Seq.d/ 1679 0.0
VHA337 (VHA337Q) /CSM/VH/VHA3-B/VHA337Q.Seq.d/ 1659 0.0
VHO859 (VHO859Q) /CSM/VH/VHO8-C/VHO859Q.Seq.d/ 1657 0.0
VHO667 (VHO667Q) /CSM/VH/VHO6-C/VHO667Q.Seq.d/ 1643 0.0
VHJ560 (VHJ560Q) /CSM/VH/VHJ5-C/VHJ560Q.Seq.d/ 1641 0.0
VHH740 (VHH740Q) /CSM/VH/VHH7-B/VHH740Q.Seq.d/ 1639 0.0
VHA377 (VHA377Q) /CSM/VH/VHA3-D/VHA377Q.Seq.d/ 1639 0.0
VHC827 (VHC827Q) /CSM/VH/VHC8-B/VHC827Q.Seq.d/ 1633 0.0
VHA662 (VHA662Q) /CSM/VH/VHA6-C/VHA662Q.Seq.d/ 1633 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ443457) Dictyostelium discoideum cDNA clone:ddv52p24, 3' ... 1677 0.0 1
(BJ442531) Dictyostelium discoideum cDNA clone:ddv50m05, 3' ... 1677 0.0 1
(BJ436501) Dictyostelium discoideum cDNA clone:ddv31j09, 3' ... 1626 0.0 2
(BJ445762) Dictyostelium discoideum cDNA clone:ddv60f16, 3' ... 1624 0.0 2
(BJ445760) Dictyostelium discoideum cDNA clone:ddv60e18, 3' ... 1610 0.0 2
(BJ442697) Dictyostelium discoideum cDNA clone:ddv50o17, 3' ... 1610 0.0 1
(BJ442656) Dictyostelium discoideum cDNA clone:ddv50g15, 3' ... 1610 0.0 2
(BJ439120) Dictyostelium discoideum cDNA clone:ddv39b17, 3' ... 1608 0.0 1
(BJ436462) Dictyostelium discoideum cDNA clone:ddv31b11, 3' ... 1584 0.0 2
(BJ442583) Dictyostelium discoideum cDNA clone:ddv50g12, 3' ... 1582 0.0 2
dna update 2008.11.25
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC117081_29(AC117081|pid:none) Dictyostelium discoideum chromoso... 164 1e-38
AC117081_21(AC117081|pid:none) Dictyostelium discoideum chromoso... 163 1e-38
AL844502_159(AL844502|pid:none) Plasmodium falciparum 3D7 chromo... 44 0.011
(P43040) RecName: Full=Uncharacterized protein MCAP_0005; AltNam... 40 0.16
AE017245_484(AE017245|pid:none) Mycoplasma synoviae 53, complete... 39 0.46
CP001581_3540(CP001581|pid:none) Clostridium botulinum A2 str. K... 37 1.3
AY587609_1(AY587609|pid:none) Ascaridia galli lipid binding prot... 37 1.8
CP000383_328(CP000383|pid:none) Cytophaga hutchinsonii ATCC 3340... 37 1.8
AF206632_1(AF206632|pid:none) Plasmodium falciparum isolate FCC1... 37 1.8
CP001146_1446(CP001146|pid:none) Dictyoglomus thermophilum H-6-1... 37 1.8
protein update 2009. 7.15
PSORT

psg: 0.26 gvh: 0.20 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.39 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: nuclear
36.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: mitochondrial

>> prediction for VHK896 is nuc

5' end seq. ID VHK896F
5' end seq.
>VHK896F.Seq
ATAAACCATTGTGATATTACAAACATATAATTTTTTAAAATGCCTTTAAACCTTGTTGCT
AGAAAATCATTAAGAGATAATGAAGAACACTTAAATAAAGCACATGAAGAAATCAAAAAT
GCTTTAAATGGTGAAGAATGGATTATTGAATTTGATTGGGATGCCATTTTCGATAAAGTT
GATGAACATGTTAAAAAACAATTAGGTGAAGTATTTTATAAAAATTTATGTCCAAATATT
AGTAAATGTATTGTAAATGCATCAAAAGATGAATTAACTAAAGAATCAATCATTAATGCA
AATACTGCTAAAAAGATTGTATTAATTGTTAATGAAGATGCCAAGAATTCATCCTATTGG
AAGTATGCATTTAATGGTGGTCAATTAAATCTTTTATTCAAGAAAGGTTGTAATAATATT
ACTGAAGCTGGTAATTTCGAATTATATAAAGTGATTCCAAGTGAAGGTGCTTATAGTTTA
CCAACTCGTCTTAATATGAAAAAGAATCAAGAAAGATTTGAACTTGCATTCGAAAGAATT
ANNNNNNNNNN
Length of 5' end seq. 551
3' end seq. ID VHK896Z
3' end seq.
>VHK896Z.Seq
NNNNNNNNNNGATTTCATTAAAGTCCTTCCAGTACCAGGNGTTTTNTCATTAGCTGCTAA
AATCAATTTGAAAGAGANCCAAGAGAAATTCGATACNGCTTTTGAAAGAATTAAAGAGGT
CACTAAAGTAGATTGGTCCTATGATGAGCAATCATTGGAAACTGTTTATCCAGCACTTGA
AGAAAGAAATAAAGAAAGAATTGGTGACTTATTCCAAGAGATTATTAAATATGTCGCTGA
TAATATCGTTAAACGTTGTAAAGAGGATATGGTTTTAGAAAGTTTCCTCGAAGCAACTTC
AAATGCAAAGATTGTTTTCCGTCACAATGCCAAAGCAAACGGTTATTGGAATTGGAGTTT
TGAAAACAATGATTTAGTAATCACCTTCAAATCAATTTGCAATGTTAGTGATAATGCAAA
CTTTGATTTCATTAAAATTTTACCATCACCAGGTGTACTCACTTTAGCCTCTAGAATCAA
TTTGAGAGAGAATCAAGAGAAAATCAATGAATCTTTCGAAAAGATTAAAGAAGTCTTGGG
TAATGATTGGACTTATGATGAATCTTCAATCGAACAAGTTTATCCAAAATTAGAAGAAAA
TAATAAACCACGTGTTGGTGATGTCTTTGCTGAAATCATTCGTTACATCAGTCAAAATAT
CGTTAAAAGATGTAAAGATGATGATATGGTCAAAGAAGGTTTCGTTGAAGCAACTCAAAA
TTGTAAAATCGTCTTCCAATTTGTTGAAAAACAAAGTTCTTATTGGGTTTGGAAATTCGA
TGGTGGTAATTTAGTCGTATCATTCAAATCAATTTGTAATACTAGTGATAATGCAAATTT
CAATTTGAAGCTCTCCTTTAAAATTAANAAAANAA
Length of 3' end seq. 875
Connected seq. ID VHK896P
Connected seq.
>VHK896P.Seq
ATAAACCATTGTGATATTACAAACATATAATTTTTTAAAATGCCTTTAAACCTTGTTGCT
AGAAAATCATTAAGAGATAATGAAGAACACTTAAATAAAGCACATGAAGAAATCAAAAAT
GCTTTAAATGGTGAAGAATGGATTATTGAATTTGATTGGGATGCCATTTTCGATAAAGTT
GATGAACATGTTAAAAAACAATTAGGTGAAGTATTTTATAAAAATTTATGTCCAAATATT
AGTAAATGTATTGTAAATGCATCAAAAGATGAATTAACTAAAGAATCAATCATTAATGCA
AATACTGCTAAAAAGATTGTATTAATTGTTAATGAAGATGCCAAGAATTCATCCTATTGG
AAGTATGCATTTAATGGTGGTCAATTAAATCTTTTATTCAAGAAAGGTTGTAATAATATT
ACTGAAGCTGGTAATTTCGAATTATATAAAGTGATTCCAAGTGAAGGTGCTTATAGTTTA
CCAACTCGTCTTAATATGAAAAAGAATCAAGAAAGATTTGAACTTGCATTCGAAAGAATT
A----------GATTTCATTAAAGTCCTTCCAGTACCAGGNGTTTTNTCATTAGCTGCTA
AAATCAATTTGAAAGAGANCCAAGAGAAATTCGATACNGCTTTTGAAAGAATTAAAGAGG
TCACTAAAGTAGATTGGTCCTATGATGAGCAATCATTGGAAACTGTTTATCCAGCACTTG
AAGAAAGAAATAAAGAAAGAATTGGTGACTTATTCCAAGAGATTATTAAATATGTCGCTG
ATAATATCGTTAAACGTTGTAAAGAGGATATGGTTTTAGAAAGTTTCCTCGAAGCAACTT
CAAATGCAAAGATTGTTTTCCGTCACAATGCCAAAGCAAACGGTTATTGGAATTGGAGTT
TTGAAAACAATGATTTAGTAATCACCTTCAAATCAATTTGCAATGTTAGTGATAATGCAA
ACTTTGATTTCATTAAAATTTTACCATCACCAGGTGTACTCACTTTAGCCTCTAGAATCA
ATTTGAGAGAGAATCAAGAGAAAATCAATGAATCTTTCGAAAAGATTAAAGAAGTCTTGG
GTAATGATTGGACTTATGATGAATCTTCAATCGAACAAGTTTATCCAAAATTAGAAGAAA
ATAATAAACCACGTGTTGGTGATGTCTTTGCTGAAATCATTCGTTACATCAGTCAAAATA
TCGTTAAAAGATGTAAAGATGATGATATGGTCAAAGAAGGTTTCGTTGAAGCAACTCAAA
ATTGTAAAATCGTCTTCCAATTTGTTGAAAAACAAAGTTCTTATTGGGTTTGGAAATTCG
ATGGTGGTAATTTAGTCGTATCATTCAAATCAATTTGTAATACTAGTGATAATGCAAATT
TCAATTTGAAGCTCTCCTTTAAAATTAANAAAANAA
Length of connected seq. 1406
Full length Seq ID -
Full length Seq. -
Length of full length seq. -