VHK894 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VHK894
Library	VH (Link to library)
Clone ID	VHK894 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16260-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VH/VHK8-D/VHK894Q.Seq.d/
Representative seq. ID	VHK894P (Link to Original site)
Representative DNA sequence	>VHK894 (VHK894Q) /CSM/VH/VHK8-D/VHK894Q.Seq.d/ CTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTCGT GCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATCAC GGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAGTT TCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCATT AAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTGGT TGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCAGT TCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCGTC GAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCAAA CCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTGAA GAAGCTTATCTCTCTXXXXXXXXXXTCCAAAGATGATCCAAAAGCTCGTGCTAACTATCT CGCTGATAACCACGAATGGGATAAAAATGATGCCATGAACATTTGGTCTTTCGGTCCAGA AGGTAACGGTGCCAATCTCCTCGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAAT TAAAGATTCTTTCGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGA AAACATGAGAGGTATCCGTTTCAATCTTTATGATGTCACCCTCCACACTGATGCCATCCA CAGAGGTGGTGGTCAAATCATCCCAACTGCTCGTCGTGTACTCTATGCTGCTGAATTAAC TGCCTCCCCAACTCTCTTAGAACCAATCTACTTAGTAGAAATTACTGCCCCAGAAAACGC TATTGGTGGTATTTACTCTGTACTCAATCGTCGTAGAGGTATTGTTATTGGTGAAGAACG TCGTATCGGTTCCCCATTATTCTCTGTCAAAGCTCATTTACCAGTATTAGAATCCTTCGG TTTCACCGCTGATTTACGTTCCCACACTGCCGGTCAAGCTTTCCCACAATGTGTCTTCGA TCATTGGGCTTCAATTGGTGTTGTCAACAAAGATAAGAAAGCCACTGAAGTCGCTTTAGC CACCAGAAAGAGAAAAGGTTTAGCCCCAGAAATCCCAGATCTTGACAAATTCCACGAAAA ACTCTAAACAATTTAAGTCGCACTTNAGTTTTCAAANATAGAATCAAATCTAAAAAAAA
sequence update	2002.10.25
Translated Amino Acid sequence	LSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKV SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFS SEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNTE EAYLS--- ---SKDDPKARANYLADNHEWDKNDAMNIWSFGPEGNGANLLVNVTKGVQYLNEIKDSFV GAFQWATKEGVVCDENMRGIRFNLYDVTLHTDAIHRGGGQIIPTARRVLYAAELTASPTL LEPIYLVEITAPENAIGGIYSVLNRRRGIVIGEERRIGSPLFSVKAHLPVLESFGFTADL RSHTAGQAFPQCVFDHWASIGVVNKDKKATEVALATRKRKGLAPEIPDLDKFHEKLti valxfsxiesnlkk
Translated Amino Acid sequence (All Frames)	Frame A: LSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKV SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFS SEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNTE EAYLS--- ---SKDDPKARANYLADNHEWDKNDAMNIWSFGPEGNGANLLVNVTKGVQYLNEIKDSFV GAFQWATKEGVVCDENMRGIRFNLYDVTLHTDAIHRGGGQIIPTARRVLYAAELTASPTL LEPIYLVEITAPENAIGGIYSVLNRRRGIVIGEERRIGSPLFSVKAHLPVLESFGFTADL RSHTAGQAFPQCVFDHWASIGVVNKDKKATEVALATRKRKGLAPEIPDLDKFHEKLti valxfsxiesnlkk Frame B: srvqkkstkwlisqsikfvplwtvvkiseicllllmsitvkplyqilskelvllpikf lvidichvvlmnksvvsplnlhlyhftskcqrktnyqlvvlhtnfsilsipqvtlisv qkllpsvllmvlslsiaskvfaykpklyyvkpslnvsnqsysstksivsynsntlk klis--- ---pkmiqklvltislittngikmmptfglsvqkvtvpisssmspkvfnimklkilsl vlsngppkkvlfvmktevsvsifmmspstlmpstevvvkssqllvvysmllnlppqls nqstkllpqktllvvftlysivvevlllvknvvsvphyslskliyqynpsvspliy vptlpvklshnvssiiglqlvlstkirkplkslpperekvpqksqiltnstknskqfk shxsfqxnqikk Frame C: leckkskvqngfhnrsnschygpskyqkyvcycscrsrnhfirffnpkswyycrsf wyeiyvmsctrawyhhificitslrnakgrqitswlyftrifnqsyrfprsrfqf rsnccppcywcfsryrlrrrclrtnrncitssrrtyqtslirqqsrsflirtpikhr slsl--- ---qrskssclsr*prmgkchehlvfrsrrrcqsprqchqrcsifenrffrw cfpmghqrrccl*kherypfqslchpphchpqrwwsnhpncssctlccinclpnsl rtnllsrnycprkrywwyllctqssrycywrtsyrfpiilcqssftsirilrfhrft fphcrssfptmclrslgfnwccqqreshsrfshqkekrfsprnprsqiprktlnnls rtxvfkxrikskk
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VHK894 (VHK894Q) /CSM/VH/VHK8-D/VHK894Q.Seq.d/ 2492 0.0 VHP730 (VHP730Q) /CSM/VH/VHP7-B/VHP730Q.Seq.d/ 1467 0.0 VHP357 (VHP357Q) /CSM/VH/VHP3-C/VHP357Q.Seq.d/ 1467 0.0 VHK162 (VHK162Q) /CSM/VH/VHK1-C/VHK162Q.Seq.d/ 1467 0.0 VHJ786 (VHJ786Q) /CSM/VH/VHJ7-D/VHJ786Q.Seq.d/ 1467 0.0 VHJ695 (VHJ695Q) /CSM/VH/VHJ6-D/VHJ695Q.Seq.d/ 1467 0.0 VHJ691 (VHJ691Q) /CSM/VH/VHJ6-D/VHJ691Q.Seq.d/ 1467 0.0 VHJ323 (VHJ323Q) /CSM/VH/VHJ3-A/VHJ323Q.Seq.d/ 1467 0.0 VHI690 (VHI690Q) /CSM/VH/VHI6-D/VHI690Q.Seq.d/ 1467 0.0 VHH822 (VHH822Q) /CSM/VH/VHH8-A/VHH822Q.Seq.d/ 1467 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N (BJ446334) Dictyostelium discoideum cDNA clone:ddv62l07, 3' ... 1467 0.0 1 (BJ446055) Dictyostelium discoideum cDNA clone:ddv61b15, 3' ... 1467 0.0 1 (BJ443434) Dictyostelium discoideum cDNA clone:ddv52l24, 3' ... 1467 0.0 1 (BJ443011) Dictyostelium discoideum cDNA clone:ddv51k15, 3' ... 1467 0.0 1 (BJ442773) Dictyostelium discoideum cDNA clone:ddv50m24, 3' ... 1467 0.0 1 (BJ442764) Dictyostelium discoideum cDNA clone:ddv50l21, 3' ... 1467 0.0 1 (BJ442731) Dictyostelium discoideum cDNA clone:ddv50e24, 3' ... 1467 0.0 1 (BJ442218) Dictyostelium discoideum cDNA clone:ddv49n05, 3' ... 1467 0.0 1 (BJ442075) Dictyostelium discoideum cDNA clone:ddv48c24, 3' ... 1467 0.0 1 (BJ441254) Dictyostelium discoideum cDNA clone:ddv46l06, 3' ... 1467 0.0 1
dna update	2008.11.25
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AY391422_1(AY391422\|pid:none) Danio rerio eukaryotic translation... 301 3e-80 AY069933_1(AY069933\|pid:none) Rana sylvatica eukaryotic translat... 300 8e-80 BC089730_1(BC089730\|pid:none) Xenopus tropicalis MGC108369 prote... 296 9e-79 BT045031_1(BT045031\|pid:none) Salmo salar clone ssal-rgf-510-120... 295 2e-78 BT071866_1(BT071866\|pid:none) Salmo salar clone ssal-rgf-501-088... 295 2e-78 BT059038_1(BT059038\|pid:none) Salmo salar clone ssal-rgf-521-328... 295 2e-78 BC060707_1(BC060707\|pid:none) Mus musculus eukaryotic translatio... 295 2e-78 AK161993_1(AK161993\|pid:none) Mus musculus 12 days embryo male w... 295 2e-78 AK032997_1(AK032997\|pid:none) Mus musculus 12 days embryo male w... 295 2e-78 (P05197) RecName: Full=Elongation factor 2; Short=EF-2;... 295 2e-78
protein update	2009. 7.15
PSORT	psg: 0.71 gvh: 0.38 alm: 0.34 top: 0.53 tms: 0.00 mit: 0.30 mip: 0.00 nuc: 0.04 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 52.0 %: cytoplasmic 36.0 %: nuclear 4.0 %: extracellular, including cell wall 4.0 %: cytoskeletal 4.0 %: vacuolar >> prediction for VHK894 is cyt
5' end seq. ID	VHK894F
5' end seq.	>VHK894F.Seq CTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTCGT GCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATCAC GGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAGTT TCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCATT AAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTGGT TGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCAGT TCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCGTC GAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCAAA CCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTGAA GAAGCTTATCTCTCTNNNNNNNNNN
Length of 5' end seq.	565
3' end seq. ID	VHK894Z
3' end seq.	>VHK894Z.Seq NNNNNNNNNNTCCAAAGATGATCCAAAAGCTCGTGCTAACTATCTCGCTGATAACCACGA ATGGGATAAAAATGATGCCATGAACATTTGGTCTTTCGGTCCAGAAGGTAACGGTGCCAA TCTCCTCGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAATTAAAGATTCTTTCGT TGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAACATGAGAGGTAT CCGTTTCAATCTTTATGATGTCACCCTCCACACTGATGCCATCCACAGAGGTGGTGGTCA AATCATCCCAACTGCTCGTCGTGTACTCTATGCTGCTGAATTAACTGCCTCCCCAACTCT CTTAGAACCAATCTACTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGTGGTATTTA CTCTGTACTCAATCGTCGTAGAGGTATTGTTATTGGTGAAGAACGTCGTATCGGTTCCCC ATTATTCTCTGTCAAAGCTCATTTACCAGTATTAGAATCCTTCGGTTTCACCGCTGATTT ACGTTCCCACACTGCCGGTCAAGCTTTCCCACAATGTGTCTTCGATCATTGGGCTTCAAT TGGTGTTGTCAACAAAGATAAGAAAGCCACTGAAGTCGCTTTAGCCACCAGAAAGAGAAA AGGTTTAGCCCCAGAAATCCCAGATCTTGACAAATTCCACGAAAAACTCTAAACAATTTA AGTCGCACTTNAGTTTTCAAANATAGAATCAAATCTAAAAAAAA
Length of 3' end seq.	764
Connected seq. ID	VHK894P
Connected seq.	>VHK894P.Seq CTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTCGT GCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATCAC GGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAGTT TCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCATT AAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTGGT TGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCAGT TCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCGTC GAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCAAA CCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTGAA GAAGCTTATCTCTCT----------TCCAAAGATGATCCAAAAGCTCGTGCTAACTATCT CGCTGATAACCACGAATGGGATAAAAATGATGCCATGAACATTTGGTCTTTCGGTCCAGA AGGTAACGGTGCCAATCTCCTCGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAAT TAAAGATTCTTTCGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGA AAACATGAGAGGTATCCGTTTCAATCTTTATGATGTCACCCTCCACACTGATGCCATCCA CAGAGGTGGTGGTCAAATCATCCCAACTGCTCGTCGTGTACTCTATGCTGCTGAATTAAC TGCCTCCCCAACTCTCTTAGAACCAATCTACTTAGTAGAAATTACTGCCCCAGAAAACGC TATTGGTGGTATTTACTCTGTACTCAATCGTCGTAGAGGTATTGTTATTGGTGAAGAACG TCGTATCGGTTCCCCATTATTCTCTGTCAAAGCTCATTTACCAGTATTAGAATCCTTCGG TTTCACCGCTGATTTACGTTCCCACACTGCCGGTCAAGCTTTCCCACAATGTGTCTTCGA TCATTGGGCTTCAATTGGTGTTGTCAACAAAGATAAGAAAGCCACTGAAGTCGCTTTAGC CACCAGAAAGAGAAAAGGTTTAGCCCCAGAAATCCCAGATCTTGACAAATTCCACGAAAA ACTCTAAACAATTTAAGTCGCACTTNAGTTTTCAAANATAGAATCAAATCTAAAAAAAA
Length of connected seq.	1309
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas