VHK888 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VHK888
Library	VH (Link to library)
Clone ID	VHK888 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16260-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VH/VHK8-D/VHK888Q.Seq.d/
Representative seq. ID	VHK888P (Link to Original site)
Representative DNA sequence	>VHK888 (VHK888Q) /CSM/VH/VHK8-D/VHK888Q.Seq.d/ AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG AAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAACA CTGAAGATAAGGAATTCGGTGATGTCACTGTATCCCXXXXXXXXXXACCACGAATGGGAT AAAAATGATGCCATGAACATTTGGTCTTTCGGTCCAGAAGGTAACGGTGCCAATCTCCTC GTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAATTAAAGATTCTTTCGTTGGTGCT TTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAACATGAGAGGTATCCGTTTC AATCTTTATGATGTCACCCTCCACACTGATGCCATCCACAGAGGTGGTGGTCAAATCATC CCAACTGCTCGTCGTGTACTCTATGCTGCTGAATTAACTGCCTCCCCAACTCTCTTAGAA CCAATCTACTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGTGGTATTTACTCTGTA CTCAATCGTCGTAGAGGTATTGTTATTGGTGAAGAACGTCGTATCGGTTCCCCATTATTC TCTGTCAAAGCTCATTTACCAGTATTAGAATCCTTCGGTTTCACCGCTGATTTACGTTCC CACACTGCCGGTCAAGCTTTCCCACAATGTGTCTTCGATCATTGGGCTTCAGTTGGTGTT GTCAACAAAGATAAGAAAGCCACTGAAGTCGCTTTAGCCACCAGAAAGAGAAAAGGTTTA GCCCCAGAAATCCCAGATCTTGACAAATTCCACGAAAAACTCTAAACAATTTAAGTCGCA CTNAGTTTTCAAA
sequence update	2002.10.25
Translated Amino Acid sequence	LSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKV SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFS SEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNTE EAYLSFRRAIESVNVIVGNTEDKEFGDVTVS--- ---HEWDKNDAMNIWSFGPEGNGANLLVNVTKGVQYLNEIKDSFVGAFQWATKEGVVCDE NMRGIRFNLYDVTLHTDAIHRGGGQIIPTARRVLYAAELTASPTLLEPIYLVEITAPENA IGGIYSVLNRRRGIVIGEERRIGSPLFSVKAHLPVLESFGFTADLRSHTAGQAFPQCVFD HWASVGVVNKDKKATEVALATRKRKGLAPEIPDLDKFHEKLtivalsfq
Translated Amino Acid sequence (All Frames)	Frame A: nsrvqkkstkwlisqsikfvplwtvvkiseicllllmsitvkplyqilskelvllpik flvidichvvlmnksvvsplnlhlyhftskcqrktnyqlvvlhtnfsilsipqvtlis vqkllpsvllmvlslsiaskvfaykpklyyvkpslnvsnqsysstksivsynsntl kklislsvellnpsmsllvtlkirnsvmslyp--- ---ttngikmmptfglsvqkvtvpisssmspkvfnimklkilslvlsngppkkvlfvm ktevsvsifmmspstlmpstevvvkssqllvvysmllnlppqlsnqstkllpqkt llvvftlysivvevlllvknvvsvphyslskliyqynpsvspliyvptlpvklshnvss iiglqlvlstkirkplkslpperekvpqksqiltnstknskqfkshxvfk Frame B: tleckkskvqngfhnrsnschygpskyqkyvcycscrsrnhfirffnpkswyycrs fwyeiyvmsctrawyhhificitslrnakgrqitswlyftrifnqsyrfprsrfq frsnccppcywcfsryrlrrrclrtnrncitssrrtyqtslirqqsrsflirtpikh rslslfpsyirqchcwhrgirchci--- ---prmgkchehlvfrsrrrcqsprqchqrcsifenrffrwcfpmghqrrccl* kherypfqslchpphchpqrwwsnhpncssctlccinclpnslrtnllsrnycprkr ywwyllctqssrycywrtsyrfpiilcqssftsirilrfhrftfphcrssfptmclr slgfswccqqreshsrfshqkekrfsprnprsqiprktlnnlsrtxfs Frame C: LSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKV SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFS SEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNTE EAYLSFRRAIESVNVIVGNTEDKEFGDVTVS--- ---HEWDKNDAMNIWSFGPEGNGANLLVNVTKGVQYLNEIKDSFVGAFQWATKEGVVCDE NMRGIRFNLYDVTLHTDAIHRGGGQIIPTARRVLYAAELTASPTLLEPIYLVEITAPENA IGGIYSVLNRRRGIVIGEERRIGSPLFSVKAHLPVLESFGFTADLRSHTAGQAFPQCVFD HWASVGVVNKDKKATEVALATRKRKGLAPEIPDLDKFHEKLti*valsfq
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VHK888 (VHK888Q) /CSM/VH/VHK8-D/VHK888Q.Seq.d/ 2537 0.0 VHO711 (VHO711Q) /CSM/VH/VHO7-A/VHO711Q.Seq.d/ 1348 0.0 VHK740 (VHK740Q) /CSM/VH/VHK7-B/VHK740Q.Seq.d/ 1348 0.0 VHK672 (VHK672Q) /CSM/VH/VHK6-C/VHK672Q.Seq.d/ 1348 0.0 VHK338 (VHK338Q) /CSM/VH/VHK3-B/VHK338Q.Seq.d/ 1348 0.0 VHK322 (VHK322Q) /CSM/VH/VHK3-A/VHK322Q.Seq.d/ 1348 0.0 VHJ680 (VHJ680Q) /CSM/VH/VHJ6-D/VHJ680Q.Seq.d/ 1348 0.0 VHJ671 (VHJ671Q) /CSM/VH/VHJ6-C/VHJ671Q.Seq.d/ 1348 0.0 VHJ541 (VHJ541Q) /CSM/VH/VHJ5-B/VHJ541Q.Seq.d/ 1348 0.0 VHI270 (VHI270Q) /CSM/VH/VHI2-C/VHI270Q.Seq.d/ 1348 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N (BJ443455) Dictyostelium discoideum cDNA clone:ddv52p22, 3' ... 1356 0.0 1 (BJ445614) Dictyostelium discoideum cDNA clone:ddv60f03, 3' ... 1348 0.0 1 (BJ443368) Dictyostelium discoideum cDNA clone:ddv52o18, 3' ... 1348 0.0 1 (BJ443281) Dictyostelium discoideum cDNA clone:ddv52p09, 3' ... 1348 0.0 1 (BJ442939) Dictyostelium discoideum cDNA clone:ddv51l09, 3' ... 1348 0.0 1 (BJ442852) Dictyostelium discoideum cDNA clone:ddv51l05, 3' ... 1348 0.0 1 (BJ442780) Dictyostelium discoideum cDNA clone:ddv50o20, 3' ... 1348 0.0 1 (BJ442687) Dictyostelium discoideum cDNA clone:ddv50m18, 3' ... 1348 0.0 1 (BJ442548) Dictyostelium discoideum cDNA clone:ddv50a11, 3' ... 1348 0.0 1 (BJ441725) Dictyostelium discoideum cDNA clone:ddv47k18, 3' ... 1348 0.0 1
dna update	2008.11.25
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AY391422_1(AY391422\|pid:none) Danio rerio eukaryotic translation... 286 2e-75 AY069933_1(AY069933\|pid:none) Rana sylvatica eukaryotic translat... 285 3e-75 BT071866_1(BT071866\|pid:none) Salmo salar clone ssal-rgf-501-088... 283 1e-74 BT059038_1(BT059038\|pid:none) Salmo salar clone ssal-rgf-521-328... 283 1e-74 BC089730_1(BC089730\|pid:none) Xenopus tropicalis MGC108369 prote... 283 1e-74 BT045031_1(BT045031\|pid:none) Salmo salar clone ssal-rgf-510-120... 282 2e-74 BT072304_1(BT072304\|pid:none) Salmo salar clone ssal-rgf-520-280... 282 2e-74 BC060707_1(BC060707\|pid:none) Mus musculus eukaryotic translatio... 280 6e-74 AK161993_1(AK161993\|pid:none) Mus musculus 12 days embryo male w... 280 6e-74 AK298498_1(AK298498\|pid:none) Homo sapiens cDNA FLJ56548 complet... 280 6e-74
protein update	2009. 7.15
PSORT	psg: 0.71 gvh: 0.38 alm: 0.34 top: 0.53 tms: 0.00 mit: 0.30 mip: 0.00 nuc: 0.04 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 52.0 %: cytoplasmic 36.0 %: nuclear 4.0 %: extracellular, including cell wall 4.0 %: cytoskeletal 4.0 %: vacuolar >> prediction for VHK888 is cyt
5' end seq. ID	VHK888F
5' end seq.	>VHK888F.Seq AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG AAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAACA CTGAAGATAAGGAATTCGGTGATGTCACTGTATCCCNNNNNNNNNN
Length of 5' end seq.	646
3' end seq. ID	VHK888Z
3' end seq.	>VHK888Z.Seq NNNNNNNNNNACCACGAATGGGATAAAAATGATGCCATGAACATTTGGTCTTTCGGTCCA GAAGGTAACGGTGCCAATCTCCTCGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAA ATTAAAGATTCTTTCGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGAT GAAAACATGAGAGGTATCCGTTTCAATCTTTATGATGTCACCCTCCACACTGATGCCATC CACAGAGGTGGTGGTCAAATCATCCCAACTGCTCGTCGTGTACTCTATGCTGCTGAATTA ACTGCCTCCCCAACTCTCTTAGAACCAATCTACTTAGTAGAAATTACTGCCCCAGAAAAC GCTATTGGTGGTATTTACTCTGTACTCAATCGTCGTAGAGGTATTGTTATTGGTGAAGAA CGTCGTATCGGTTCCCCATTATTCTCTGTCAAAGCTCATTTACCAGTATTAGAATCCTTC GGTTTCACCGCTGATTTACGTTCCCACACTGCCGGTCAAGCTTTCCCACAATGTGTCTTC GATCATTGGGCTTCAGTTGGTGTTGTCAACAAAGATAAGAAAGCCACTGAAGTCGCTTTA GCCACCAGAAAGAGAAAAGGTTTAGCCCCAGAAATCCCAGATCTTGACAAATTCCACGAA AAACTCTAAACAATTTAAGTCGCACTNAGTTTTCAAA
Length of 3' end seq.	697
Connected seq. ID	VHK888P
Connected seq.	>VHK888P.Seq AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG AAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAACA CTGAAGATAAGGAATTCGGTGATGTCACTGTATCCC----------ACCACGAATGGGAT AAAAATGATGCCATGAACATTTGGTCTTTCGGTCCAGAAGGTAACGGTGCCAATCTCCTC GTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAATTAAAGATTCTTTCGTTGGTGCT TTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAACATGAGAGGTATCCGTTTC AATCTTTATGATGTCACCCTCCACACTGATGCCATCCACAGAGGTGGTGGTCAAATCATC CCAACTGCTCGTCGTGTACTCTATGCTGCTGAATTAACTGCCTCCCCAACTCTCTTAGAA CCAATCTACTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGTGGTATTTACTCTGTA CTCAATCGTCGTAGAGGTATTGTTATTGGTGAAGAACGTCGTATCGGTTCCCCATTATTC TCTGTCAAAGCTCATTTACCAGTATTAGAATCCTTCGGTTTCACCGCTGATTTACGTTCC CACACTGCCGGTCAAGCTTTCCCACAATGTGTCTTCGATCATTGGGCTTCAGTTGGTGTT GTCAACAAAGATAAGAAAGCCACTGAAGTCGCTTTAGCCACCAGAAAGAGAAAAGGTTTA GCCCCAGAAATCCCAGATCTTGACAAATTCCACGAAAAACTCTAAACAATTTAAGTCGCA CTNAGTTTTCAAA
Length of connected seq.	1323
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas