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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHK724
Library VH
(Link to library)
Clone ID VHK724
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16579-1
Original site URL
Representative seq. ID VHK724P
(Link to Original site)
Representative DNA sequence 
>VHK724 (VHK724Q) /CSM/VH/VHK7-A/VHK724Q.Seq.d/
TAACATTCACTAATAGATACCACAAAAGGTGTTAGTTCATTAAGACAGCAGGACGGTGGC
CATGGAAGTCGGTATCCGCTAAGGAGTGTGTAACAACTCACCTGCCAAATGGACTAGCCC
TGAAAATGGATGACGCTAGCAGTGGATGGTCGATGCCCAATCGTTAAAAGAAGTGATAAT
ACTTTTAACGTGTAGGAAGGCGTGAAGGTAACGTAGAAGCTTGAATGTGAATTCGAGTGG
AGTTGTCTTTAGTGCAGATCTTGATGGTAGTAGCAAATATTCAAAAGAATTTACTTTGAA
GGCCGAAGTGGGGAAGGGTTCCATAACAATGGAATTCACTTATGGGTGAGTCGATCCTAA
GGTTTGGGTTAACTCTCTCTAATAAGGTTACTTGGTCATTGGATCGAAAGTGAAGGTGGC
TTTAACACTAGTGACTTTATAGGCCGAAAGGGAAGCGGGTTAAAATTCCTGCACCATCGA
ATGGGATATTAGGGTAACCGATCGTAATCCGGGACATCAATTGGCGGTCGAGGAAGAGTT
ATCTTTTCTTGTTAACATTGTCTTGGGGTCCTCCXXXXXXXXXXCAAAGGCAGGCTCAGT
GAGAACAGAAATTCTCACGTAGAGTAAAAGGGCAAAAGCCTGCTTGATTCTGATTTTCAG
TACTAATCGGAACTGGGAAACCAGGGCCTATCGATCCTTTATGTGCTTAAATCTTAAGCC
TAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGCTCATAG
CGACGCTGCTTTTTGATCCTTCGATGTCGGCTCTTCTTATCATTGTGAAGCAGAATTCAC
AAAGTGTTGGATTGTTCACCCACTAACAAGGAACGTGAGCTGGGTTTAGACCGTCGTGAG
ACAGGTTAGTTTTACCCTACTGTTGTCAATTGTTTGCGTAATAGTAGCATGATTTAGTAC
GAGAGGAACTGTCATGCCGGATCACTGGTCTGTAGGTTTATTTGACAAAATAGTGACCTG
CCGCTACCATCCGTTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATTCTAGAAACG
CAAACCAAATGCTTTAGAGTGTGAATGTTGTAGGTAACATTAGGTTGTTGGTGGGGGACC
ACTTTCAACTTTAAACCATATGATTAATCGCTGTTACACTGCGGTTTCCTTCCGGTTATT
GTGGTGGGTGGCTAAATTCTAATTTATATCCTCGTTCCGCTCAACTCTTCGATTGTAGAC
GACTATCAAATGAACTAGGTGCTGTAAGCTTCCGAGTAGCGTTCAGTTACGAGGGGTTGA
GGCTTTTCCATTAGTTCTGTTTTTAACATTAAACAAAAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
nih**ipqkvlvh*dsrtvamevgir*gvcnnspakwtspeng*r*qwmvdaqslkevii
lltcrka*r*rrslnvnssgvvfsadldgsskyskeftlkaevgkgsitmeftyg*vdpk
vwvnsl**gylvigskvkvaltlvtl*aereag*NSCTIEWDIRVTDRNPGHQLAVEEEL
SFLVNIVLGSS---

---KGRLSENRNSHVE*kgkslldsdfqy*selgnqglsilyvlks*a*rcqksyhrdnw
lvaakrs*rrcflilrcrlflsl*srihkvldcsptnkerelgldrretg*fyptvvncl
rnssmi*yernchagslvcrfi*qnsdlplpsvg*wlnasksesiletqtkcfrv*ml*v
tlgcwwgttfnfkpyd*sllhcgflpvivvgg*iliyilvplnssivddyqmn*vl*ase
*rsvtrg*gfsissvfnikqkk
Translated Amino Acid sequence (All Frames) 
Frame A:
*hslidttkgvsslrqqdgghgsryplrsv*qltcqmd*p*kwmtlavdgrcpivkrsdn
tfnv*egvkvt*klecefewscl*crs*w**qifkriyfegrsgegfhnngihlwvsrs*
glg*lslirllghwieseggfntsdfigrkgsglkflhhrmgy*gnrs*sgtsiggrgrv
ifsc*hclgvl---

---qrqaq*eqkfsrrvkgqkpa*f*fsvligtgkpgpidplca*ilslevseklpqg*l
acgsqaliatllfdpsmsalliivkqnsqsvglfth*qgt*agfrps*drlvlpyccqlf
a***hdlvreelscritgl*vyltk**paatirwimaerl*vrihsrnanqml*svnvvg
nirllvgdhfql*ti*liavtlrfpsgycggwlnsnlyprsaqlfdcrrlsnelgavsfr
vafsyeglrlfh*fcf*h*tkk

Frame B:
nih**ipqkvlvh*dsrtvamevgir*gvcnnspakwtspeng*r*qwmvdaqslkevii
lltcrka*r*rrslnvnssgvvfsadldgsskyskeftlkaevgkgsitmeftyg*vdpk
vwvnsl**gylvigskvkvaltlvtl*aereag*NSCTIEWDIRVTDRNPGHQLAVEEEL
SFLVNIVLGSS---

---KGRLSENRNSHVE*kgkslldsdfqy*selgnqglsilyvlks*a*rcqksyhrdnw
lvaakrs*rrcflilrcrlflsl*srihkvldcsptnkerelgldrretg*fyptvvncl
rnssmi*yernchagslvcrfi*qnsdlplpsvg*wlnasksesiletqtkcfrv*ml*v
tlgcwwgttfnfkpyd*sllhcgflpvivvgg*iliyilvplnssivddyqmn*vl*ase
*rsvtrg*gfsissvfnikqkk

Frame C:
tftnryhkrc*fiktagrwpwksvsakecvtthlpnglalkmddassgwsmpnr*kk**y
f*rvgrregnvea*m*irvelslvqilmvvaniqknll*rpkwgrvp*qwnslmgesilr
fgltlsnkvtwsldrk*rwl*h**lyrpkgkrvkipapsngilg*pivirdinwrsrksy
lflltlswgp---

---kagsvrteilt*skrakaclilifstnrnwetrayrsfmclnlkprgvrkvttgitg
lwqpsahsdaaf*sfdvgssyhceaeftkcwivhpltrnvswv*tvvrqvsftlllsivc
viva*fstrgtvmpdhwsvglfdkivtcryhpldng*tplsqnpf*krkpnalececcr*
h*vvgggplstlnhminrcytavsfrllwwvakf*fissfrstlrl*ttik*trccklps
svqlrgveafplvlfltlnkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHK724 (VHK724Q) /CSM/VH/VHK7-A/VHK724Q.Seq.d/                       2625   0.0
VHD592 (VHD592Q) /CSM/VH/VHD5-D/VHD592Q.Seq.d/                       1487   0.0
SHA880 (SHA880Q) /CSM/SH/SHA8-D/SHA880Q.Seq.d/                       1487   0.0
CHI557 (CHI557Q) /CSM/CH/CHI5-C/CHI557Q.Seq.d/                       1487   0.0
VHA465 (VHA465Q) /CSM/VH/VHA4-C/VHA465Q.Seq.d/                       1473   0.0
SLE369 (SLE369Q) /CSM/SL/SLE3-C/SLE369Q.Seq.d/                       1471   0.0
VHK846 (VHK846Q) /CSM/VH/VHK8-B/VHK846Q.Seq.d/                       1463   0.0
VHK190 (VHK190Q) /CSM/VH/VHK1-D/VHK190Q.Seq.d/                       1449   0.0
CHL604 (CHL604Q) /CSM/CH/CHL6-A/CHL604Q.Seq.d/                       1449   0.0
VHA301 (VHA301Q) /CSM/VH/VHA3-A/VHA301Q.Seq.d/                       1447   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ443204) Dictyostelium discoideum cDNA clone:ddv52p05, 3' ...  1526   0.0    1
(BJ438901) Dictyostelium discoideum cDNA clone:ddv38g23, 3' ...  1487   0.0    1
(BJ403693) Dictyostelium discoideum cDNA clone:dds25p20, 3' ...  1487   0.0    1
(BJ380833) Dictyostelium discoideum cDNA clone:ddc39a15, 3' ...  1487   0.0    1
(BJ436548) Dictyostelium discoideum cDNA clone:ddv31b18, 3' ...  1473   0.0    1
(BJ443266) Dictyostelium discoideum cDNA clone:ddv52l12, 3' ...  1463   0.0    1
(BJ384019) Dictyostelium discoideum cDNA clone:ddc47p21, 3' ...  1433   0.0    1
(AY171066) Dictyostelium discoideum extrachromosomal palindr...  1431   0.0    2
(BJ357767) Dictyostelium discoideum cDNA clone:dda64k18, 3' ...  1431   0.0    1
(BJ441582) Dictyostelium discoideum cDNA clone:ddv47m02, 3' ...  1427   0.0    1
dna update 2008.11.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU430725_1(EU430725|pid:none) Cupressus sempervirens clone CYPLP...   140   1e-31
AY436773_1(AY436773|pid:none) Pyrus communis putative senescence...   104   8e-21
CP001575_406(CP001575|pid:none) Micromonas sp. RCC299 chromosome...   102   2e-20
AK230153_1(AK230153|pid:none) Arabidopsis thaliana mRNA for hypo...    99   3e-19
EF192058_1(EF192058|pid:none) Trichosanthes dioica clone TDM04 p...    78   6e-13
EU244380_1(EU244380|pid:none) Haliotis diversicolor clone HDr4CJ...    73   2e-11
BC114377_1(BC114377|pid:none) Homo sapiens cDNA clone MGC:134704...    68   9e-10
AL844507_287(AL844507|pid:none) Plasmodium falciparum 3D7 chromo...    66   3e-09
CP000497_644(CP000497|pid:none) Pichia stipitis CBS 6054 chromos...    60   1e-07
U12823_1(U12823|pid:none) Acanthamoeba polyphaga CDC:0187:1 hemo...    45   4e-05
protein update 2009. 7.15
PSORT 

 psg: 0.75  gvh: 0.50  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: Golgi
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for VHK724 is cyt
5' end seq. ID VHK724F
5' end seq. 
>VHK724F.Seq
TAACATTCACTAATAGATACCACAAAAGGTGTTAGTTCATTAAGACAGCAGGACGGTGGC
CATGGAAGTCGGTATCCGCTAAGGAGTGTGTAACAACTCACCTGCCAAATGGACTAGCCC
TGAAAATGGATGACGCTAGCAGTGGATGGTCGATGCCCAATCGTTAAAAGAAGTGATAAT
ACTTTTAACGTGTAGGAAGGCGTGAAGGTAACGTAGAAGCTTGAATGTGAATTCGAGTGG
AGTTGTCTTTAGTGCAGATCTTGATGGTAGTAGCAAATATTCAAAAGAATTTACTTTGAA
GGCCGAAGTGGGGAAGGGTTCCATAACAATGGAATTCACTTATGGGTGAGTCGATCCTAA
GGTTTGGGTTAACTCTCTCTAATAAGGTTACTTGGTCATTGGATCGAAAGTGAAGGTGGC
TTTAACACTAGTGACTTTATAGGCCGAAAGGGAAGCGGGTTAAAATTCCTGCACCATCGA
ATGGGATATTAGGGTAACCGATCGTAATCCGGGACATCAATTGGCGGTCGAGGAAGAGTT
ATCTTTTCTTGTTAACATTGTCTTGGGGTCCTCCNNNNNNNNNN
Length of 5' end seq. 584
3' end seq. ID VHK724Z
3' end seq. 
>VHK724Z.Seq
NNNNNNNNNNCAAAGGCAGGCTCAGTGAGAACAGAAATTCTCACGTAGAGTAAAAGGGCA
AAAGCCTGCTTGATTCTGATTTTCAGTACTAATCGGAACTGGGAAACCAGGGCCTATCGA
TCCTTTATGTGCTTAAATCTTAAGCCTAGAGGTGTCAGAAAAGTTACCACAGGGATAACT
GGCTTGTGGCAGCCAAGCGCTCATAGCGACGCTGCTTTTTGATCCTTCGATGTCGGCTCT
TCTTATCATTGTGAAGCAGAATTCACAAAGTGTTGGATTGTTCACCCACTAACAAGGAAC
GTGAGCTGGGTTTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTGTTGTCAATTGTT
TGCGTAATAGTAGCATGATTTAGTACGAGAGGAACTGTCATGCCGGATCACTGGTCTGTA
GGTTTATTTGACAAAATAGTGACCTGCCGCTACCATCCGTTGGATAATGGCTGAACGCCT
CTAAGTCAGAATCCATTCTAGAAACGCAAACCAAATGCTTTAGAGTGTGAATGTTGTAGG
TAACATTAGGTTGTTGGTGGGGGACCACTTTCAACTTTAAACCATATGATTAATCGCTGT
TACACTGCGGTTTCCTTCCGGTTATTGTGGTGGGTGGCTAAATTCTAATTTATATCCTCG
TTCCGCTCAACTCTTCGATTGTAGACGACTATCAAATGAACTAGGTGCTGTAAGCTTCCG
AGTAGCGTTCAGTTACGAGGGGTTGAGGCTTTTCCATTAGTTCTGTTTTTAACATTAAAC
AAAAAAAA
Length of 3' end seq. 788
Connected seq. ID VHK724P
Connected seq. 
>VHK724P.Seq
TAACATTCACTAATAGATACCACAAAAGGTGTTAGTTCATTAAGACAGCAGGACGGTGGC
CATGGAAGTCGGTATCCGCTAAGGAGTGTGTAACAACTCACCTGCCAAATGGACTAGCCC
TGAAAATGGATGACGCTAGCAGTGGATGGTCGATGCCCAATCGTTAAAAGAAGTGATAAT
ACTTTTAACGTGTAGGAAGGCGTGAAGGTAACGTAGAAGCTTGAATGTGAATTCGAGTGG
AGTTGTCTTTAGTGCAGATCTTGATGGTAGTAGCAAATATTCAAAAGAATTTACTTTGAA
GGCCGAAGTGGGGAAGGGTTCCATAACAATGGAATTCACTTATGGGTGAGTCGATCCTAA
GGTTTGGGTTAACTCTCTCTAATAAGGTTACTTGGTCATTGGATCGAAAGTGAAGGTGGC
TTTAACACTAGTGACTTTATAGGCCGAAAGGGAAGCGGGTTAAAATTCCTGCACCATCGA
ATGGGATATTAGGGTAACCGATCGTAATCCGGGACATCAATTGGCGGTCGAGGAAGAGTT
ATCTTTTCTTGTTAACATTGTCTTGGGGTCCTCC----------CAAAGGCAGGCTCAGT
GAGAACAGAAATTCTCACGTAGAGTAAAAGGGCAAAAGCCTGCTTGATTCTGATTTTCAG
TACTAATCGGAACTGGGAAACCAGGGCCTATCGATCCTTTATGTGCTTAAATCTTAAGCC
TAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGCTCATAG
CGACGCTGCTTTTTGATCCTTCGATGTCGGCTCTTCTTATCATTGTGAAGCAGAATTCAC
AAAGTGTTGGATTGTTCACCCACTAACAAGGAACGTGAGCTGGGTTTAGACCGTCGTGAG
ACAGGTTAGTTTTACCCTACTGTTGTCAATTGTTTGCGTAATAGTAGCATGATTTAGTAC
GAGAGGAACTGTCATGCCGGATCACTGGTCTGTAGGTTTATTTGACAAAATAGTGACCTG
CCGCTACCATCCGTTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATTCTAGAAACG
CAAACCAAATGCTTTAGAGTGTGAATGTTGTAGGTAACATTAGGTTGTTGGTGGGGGACC
ACTTTCAACTTTAAACCATATGATTAATCGCTGTTACACTGCGGTTTCCTTCCGGTTATT
GTGGTGGGTGGCTAAATTCTAATTTATATCCTCGTTCCGCTCAACTCTTCGATTGTAGAC
GACTATCAAATGAACTAGGTGCTGTAAGCTTCCGAGTAGCGTTCAGTTACGAGGGGTTGA
GGCTTTTCCATTAGTTCTGTTTTTAACATTAAACAAAAAAAA
Length of connected seq. 1352
Full length Seq ID -
Full length Seq. -
Length of full length seq. -