AFO440
Library AF
(Link to library)
Clone ID AFO440
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16465-1
Original site URL
Representative seq. ID AFO440Z
(Link to Original site)
Representative DNA sequence
>AFO440 (AFO440Q) /CSM/AF/AFO4-B/AFO440Q.Seq.d/
XXXXXXXXXXCGTATTTTACAATTAGCATCTGAAGGTGCACTCTCACTCAAAGAGATTAA
ACAATTCATTCTTGATGAATGTGATACCATGCTCGAATCATTGGATATGAGAAAGGATGT
ACAAAAGATCTTCAAACTCATCCCAGCCAACAAACAAGTTATGATGTTTTCAGCTACCCT
CTCTGATACCATTCGTCCAATCTGTAAGAAGTTTATGAACAATCCATTGGAAATCTACAT
CAATGATGGTAGTAAACTCACTCTCCATGGTCTTCAACAATACTACGTACCAATCACTGA
AGAACAAAAGAATAAAAAACTCATTGAACTCTTGGATTCATTAGACTTTAATCAAGCCGT
TATTTTCGTCAAATCTGTTAGACGTGCTGATGCCTTAAATAAGATCCTCCAAGATATTGG
TTTCCCATCCATCTGTATTCATCGTGACCTCGATCAAAAGGATCGTATCGAACAATACCG
TAAATTCAAAAACTTTGAATCTCGTATCATGGTTGCCACTAATATCTTTGGTCGTGGTAT
CGATATTGAACGTGTCAATGTCGTCATCAACTACGATATGGCTGAATCT
sequence update 2001. 6. 1
Translated Amino Acid sequence
---ILQLASEGALSLKEIKQFILDECDTMLESLDMRKDVQKIFKLIPANKQVMMFSATLS
DTIRPICKKFMNNPLEIYINDGSKLTLHGLQQYYVPITEEQKNKKLIELLDSLDFNQAVI
FVKSVRRADALNKILQDIGFPSICIHRDLDQKDRIEQYRKFKNFESRIMVATNIFGRGID
IERVNVVINYDMAES


Translated Amino Acid sequence (All Frames)
Frame A:
---vfyn*hlkvhshskrlnnsflmnvipcsnhwi*ermykrssnssqptnkl*cfqlps
lipfvqsvrsl*tihwkstsmmvvnslsmvfnnttyqslknkriknslnswih*tlikpl
fssnlldvlmp*irsskilvshpsvfivtsikrivsnntvnsktlnlvswlplislvvvs
ilnvsmsssttiwln


Frame B:
---yftisi*rctltqrd*tihs**m*yhariigyekgctkdlqthpsqqtsydvfsypl
*yhssnl*evyeqsignlhq*w**thspwsstilrtnh*rtke*kth*tlgfirl*ssry
frqic*tc*clk*dpprywfpihlyss*prskgsyrtip*iqkl*isyhgch*ylwswyr
y*tcqcrhqlryg*i


Frame C:
---ILQLASEGALSLKEIKQFILDECDTMLESLDMRKDVQKIFKLIPANKQVMMFSATLS
DTIRPICKKFMNNPLEIYINDGSKLTLHGLQQYYVPITEEQKNKKLIELLDSLDFNQAVI
FVKSVRRADALNKILQDIGFPSICIHRDLDQKDRIEQYRKFKNFESRIMVATNIFGRGID
IERVNVVINYDMAES


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFE359 (VFE359Q) /CSM/VF/VFE3-C/VFE359Q.Seq.d/ 1148 0.0
SFF569 (SFF569Q) /CSM/SF/SFF5-C/SFF569Q.Seq.d/ 1148 0.0
FC-AI06 (FC-AI06Q) /CSM/FC/FC-AI/FC-AI06Q.Seq.d/ 1148 0.0
AFO440 (AFO440Q) /CSM/AF/AFO4-B/AFO440Q.Seq.d/ 1148 0.0
AFM640 (AFM640Q) /CSM/AF/AFM6-B/AFM640Q.Seq.d/ 1148 0.0
AFL501 (AFL501Q) /CSM/AF/AFL5-A/AFL501Q.Seq.d/ 1148 0.0
AFD666 (AFD666Q) /CSM/AF/AFD6-C/AFD666Q.Seq.d/ 1148 0.0
VFD348 (VFD348Q) /CSM/VF/VFD3-B/VFD348Q.Seq.d/ 1146 0.0
SFG247 (SFG247Q) /CSM/SF/SFG2-B/SFG247Q.Seq.d/ 1146 0.0
AFM164 (AFM164Q) /CSM/AF/AFM1-C/AFM164Q.Seq.d/ 1144 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AL408654|AL408654.1 T7 end of clone AV0AA009H09 of library AV0AA from strain CBS 379 of Saccharomyces exiguus. 38 7e-10 4
AX488925|AX488925.1 Sequence 6225 from Patent WO02053728. 40 8e-10 5
BF071471|BF071471.1 st59b09.y1 Gm-c1053 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1053-857 5' similar to TR:Q9ZS06 Q9ZS06 RNA HELICASE ;, mRNA sequence. 56 1e-08 2
AW759959|AW759959.1 sl56c07.y1 Gm-c1027 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1027-5317 5' similar to TR:Q9ZS06 Q9ZS06 RNA HELICASE ;, mRNA sequence. 56 1e-08 2
BI742220|BI742220.1 kt91h02.y1 Strongyloides ratti L3 adult pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:HE47_CAEEL Q18212 PROBABLE ATP-DEPENDENT RNA HELICASE P47 HOMOLOG. [1] ;, mRNA sequence. 38 5e-08 4
BI974435|BI974435.1 saj01e10.y1 Gm-c1065 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1065-9068 5' similar to TR:Q9ZS06 Q9ZS06 RNA HELICASE ;, mRNA sequence. 52 2e-07 2
Z74132|Z74132.1 S.cerevisiae chromosome IV reading frame ORF YDL084w. 42 2e-07 4
AI966749|AI966749.1 sc57c05.y1 Gm-c1016 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1016-513 5' similar to TR:O13792 O13792 PUTATIVE ATP-DEPENDENT RNA HELICASE C17G6.14C. ;, mRNA sequence. 48 1e-06 2
AK067431|AK067431.1 Oryza sativa (japonica cultivar-group) cDNA clone:J013107H03, full insert sequence. 40 2e-06 3
BF936994|BF936994.1 EST460049 Schistosoma mansoni female, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMFCE26 5' end, mRNA sequence. 64 2e-06 1
dna update 2003. 9.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AJ010466_1(AJ010466|pid:none) Arabidopsis thaliana mRNA for DEAD... 259 4e-68
GM694469_1(GM694469|pid:none) Sequence 25 from Patent EP1953235. 258 1e-67
GM694505_1(GM694505|pid:none) Sequence 61 from Patent EP1953235.... 257 2e-67
(O13792) RecName: Full=ATP-dependent RNA helicase uap56; ... 256 2e-67
BT068295_1(BT068295|pid:none) Zea mays full-length cDNA clone ZM... 256 2e-67
D89270_1(D89270|pid:none) Schizosaccharomyces pombe mRNA, partia... 256 3e-67
(Q56XG6) RecName: Full=DEAD-box ATP-dependent RNA helicase 15; ... 256 4e-67
EU963228_1(EU963228|pid:none) Zea mays clone 259532 spliceosome ... 256 4e-67
AL360314_6(AL360314|pid:none) Arabidopsis thaliana DNA chromosom... 256 4e-67
AJ428513_1(AJ428513|pid:none) Chironomus tentans mRNA for HEL pr... 254 9e-67
protein update 2009. 4.26
PSORT

psg: 0.75 gvh: 0.37 alm: 0.40 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: cytoplasmic
32.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: vesicles of secretory system

>> prediction for AFO440 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFO440Z
3' end seq.
>AFO440Z.Seq
----------CGTATTTTACAATTAGCATCTGAAGGTGCACTCTCACTCAAAGAGATTAA
ACAATTCATTCTTGATGAATGTGATACCATGCTCGAATCATTGGATATGAGAAAGGATGT
ACAAAAGATCTTCAAACTCATCCCAGCCAACAAACAAGTTATGATGTTTTCAGCTACCCT
CTCTGATACCATTCGTCCAATCTGTAAGAAGTTTATGAACAATCCATTGGAAATCTACAT
CAATGATGGTAGTAAACTCACTCTCCATGGTCTTCAACAATACTACGTACCAATCACTGA
AGAACAAAAGAATAAAAAACTCATTGAACTCTTGGATTCATTAGACTTTAATCAAGCCGT
TATTTTCGTCAAATCTGTTAGACGTGCTGATGCCTTAAATAAGATCCTCCAAGATATTGG
TTTCCCATCCATCTGTATTCATCGTGACCTCGATCAAAAGGATCGTATCGAACAATACCG
TAAATTCAAAAACTTTGAATCTCGTATCATGGTTGCCACTAATATCTTTGGTCGTGGTAT
CGATATTGAACGTGTCAATGTCGTCATCAACTACGATATGGCTGAATCT
Length of 3' end seq. 579
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -