AFO429
Library AF
(Link to library)
Clone ID AFO429
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10734-1
Original site URL
Representative seq. ID AFO429Z
(Link to Original site)
Representative DNA sequence
>AFO429 (AFO429Q) /CSM/AF/AFO4-B/AFO429Q.Seq.d/
XXXXXXXXXXTTATTCATTGACTCCACTCAAGATAACACTCAAGTTCTCGAAGATGTAAA
GAAAATCGCTACCTCACAAAAAGGTAATGCCGTTTTCTGTTGGGTCGATATGAAGAAATT
CCCACAACAAGCAACTCATATGGGTCTCTCTGGTAAAGTTGTTCCAGCCATCTCTGTTGA
TTCAGTTGCCAATAAAGCTCGTTACAATTTCGATGAAAAAGAAACCTTCTCATTCGATAC
CGTCTCCAAATGGATCCAAGATGTCATTGGTGGTAAAGTTTCTCCATTTGTTAAATCTCA
ACCAGAACCAGAATCAAATGATGCTCCAGTTAAGGTTGCCGTTGGTACCACTTTCAAAAA
GTTGGTTTTAGACTCACCAAAGGATGTTTTGGTTGAATTCTACGCTCCATGGTGCGGTCA
TTGCAAGAATCTTGCTCCAATCTACGATAAATTAGGTGAATACTTAAAAGACGTTGAATC
TGTCTCAATCGTAAAGATTGATGCCGACTCAAATGATGTACCAAGTGATATCGAAATTAG
AGGTTACCCAACCATCATGCTCTTCAAAGCTGATGACAAAGAAAATCCAATCTCTTATGA
AGGTCAAAGAAATGATCATATGAACTTTGTTGAATTCATTCAAGATAACGCTGCCATTGA
ATTCAAATNNCCATCATCNC
sequence update 2001. 6. 1
Translated Amino Acid sequence
---FIDSTQDNTQVLEDVKKIATSQKGNAVFCWVDMKKFPQQATHMGLSGKVVPAISVDS
VANKARYNFDEKETFSFDTVSKWIQDVIGGKVSPFVKSQPEPESNDAPVKVAVGTTFKKL
VLDSPKDVLVEFYAPWCGHCKNLAPIYDKLGEYLKDVESVSIVKIDADSNDVPSDIEIRG
YPTIMLFKADDKENPISYEGQRNDHMNFVEFIQDNAAIEFKXPSS


Translated Amino Acid sequence (All Frames)
Frame A:
---ysltplkitlkfskm*rkslphkkvmpfsvgsi*rnshnkqliwvslvklfqpslli
qlpiklvtismkkkpshsipspngskmslvvkflhllnlnqnqnqmmlqlrlplvplsks
wf*thqrmfwlnstlhgaviarillqstin*vnt*ktlnlsqs*rlmptqmmyqviskle
vtqpscssklmtkkiqslmkvkemii*tllnsfkitlplnsnxhhx


Frame B:
---ih*lhsr*hsssrrckenryltkr*crfllgryeeipttsnsygslw*scsshlc*f
scq*sslqfr*krnlliryrlqmdprchww*sfsic*istrtrik*css*gcrwyhfqkv
gfrltkgcfg*ilrsmvrslqescsnlr*ir*ilkrr*iclnrkd*crlk*ctk*yrn*r
lpnhhalqs**qrksnll*rskk*syelc*ihsr*rch*iqxxii


Frame C:
---FIDSTQDNTQVLEDVKKIATSQKGNAVFCWVDMKKFPQQATHMGLSGKVVPAISVDS
VANKARYNFDEKETFSFDTVSKWIQDVIGGKVSPFVKSQPEPESNDAPVKVAVGTTFKKL
VLDSPKDVLVEFYAPWCGHCKNLAPIYDKLGEYLKDVESVSIVKIDADSNDVPSDIEIRG
YPTIMLFKADDKENPISYEGQRNDHMNFVEFIQDNAAIEFKXPSS


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AHO764 (AHO764Q) /CSM/AH/AHO7-C/AHO764Q.Seq.d/ 1312 0.0
AFO429 (AFO429Q) /CSM/AF/AFO4-B/AFO429Q.Seq.d/ 1312 0.0
AFO368 (AFO368Q) /CSM/AF/AFO3-C/AFO368Q.Seq.d/ 1312 0.0
AFN855 (AFN855Q) /CSM/AF/AFN8-C/AFN855Q.Seq.d/ 1312 0.0
AFL563 (AFL563Q) /CSM/AF/AFL5-C/AFL563Q.Seq.d/ 1312 0.0
AFI881 (AFI881Q) /CSM/AF/AFI8-D/AFI881Q.Seq.d/ 1312 0.0
AFI432 (AFI432Q) /CSM/AF/AFI4-B/AFI432Q.Seq.d/ 1312 0.0
AFM464 (AFM464Q) /CSM/AF/AFM4-C/AFM464Q.Seq.d/ 1310 0.0
AFN679 (AFN679Q) /CSM/AF/AFN6-D/AFN679Q.Seq.d/ 1306 0.0
AFO479 (AFO479Q) /CSM/AF/AFO4-D/AFO479Q.Seq.d/ 1304 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BJ171852|BJ171852.1 Physcomitrella patens subsp. patens cDNA clone:pph30f12, 3' end, single read. 599 e-167 1
BM398179|BM398179.1 5009-0-41-G11.t.1 Chilcoat/Turkewitz cDNA (large fraction) Tetrahymena thermophila cDNA, mRNA sequence. 74 2e-09 1
AL924030|AL924030.1 Danio rerio EST sequence, clone 134-B07-2. 70 4e-08 1
CB176061|CB176061.1 pl17e07.y3 Ancylostoma ceylanicum adult Ancylostoma ceylanicum cDNA 5' similar to TR:O17908 O17908 H06O01.1 PROTEIN. [1] ;, mRNA sequence. 70 4e-08 1
BM280519|BM280519.1 ki01h03.y1 Ascaris suum L4 pSPORT1 Zarlenga v1 Ascaris suum cDNA 5' similar to SW:ERP5_CAEEL Q11067 PROBABLE PROTEIN DISULFIDE ISOMERASE P5 PRECURSOR ;, mRNA sequence. 68 2e-07 1
AW255071|AW255071.1 ML1365 peppermint glandular trichome Mentha x piperita cDNA, mRNA sequence. 64 2e-06 1
BM315730|BM315730.1 fw64d09.y1 Sugano SJD adult male Danio rerio cDNA clone 5612584 5' similar to SW:ER60_HUMAN P30101 PROBABLE PROTEIN DISULFIDE ISOMERASE ER-60 PRECURSOR ;, mRNA sequence. 62 9e-06 1
BM308748|BM308748.1 sak49h10.y1 Gm-c1036 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1036-6523 5' similar to TR:P93358 P93358 PROTEIN DISULFIDE-ISOMERASE PRECURSOR. ;, mRNA sequence. 60 4e-05 1
BU795021|S34275 protein disulfide-isomerase homolog precursor - fluke (Schistosoma mansoni), mRNA sequence. 60 4e-05 1
BM174369|PDA4_MOUSE PROTEIN DISULFIDE ISOMERASE A4 PRECURSOR (PROTEIN ERP-72) (ERP72), mRNA sequence. 60 4e-05 1
dna update 2003. 9.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q12730) RecName: Full=Protein disulfide-isomerase; Sho... 177 2e-43
(Q00248) RecName: Full=Protein disulfide-isomerase; Sho... 174 2e-42
EU016183_1(EU016183|pid:none) Haemaphysalis longicornis strain G... 173 5e-42
CU633901_146(CU633901|pid:none) Podospora anserina genomic DNA c... 168 1e-40
DQ066336_1(DQ066336|pid:none) Ixodes scapularis isolate IS-6-12-... 168 1e-40
DQ377176_1(DQ377176|pid:none) Amblyomma variegatum protein disul... 163 5e-39
AE013599_1413(AE013599|pid:none) Drosophila melanogaster chromos... 154 2e-36
CR382131_125(CR382131|pid:none) Yarrowia lipolytica strain CLIB1... 152 6e-36
(Q10057) RecName: Full=Putative protein disulfide-isomerase C1F5... 152 8e-36
AB022013_1(AB022013|pid:none) Antheraea pernyi mRNA for protein ... 151 1e-35
protein update 2009. 4.26
PSORT

psg: 0.75 gvh: 0.36 alm: 0.43 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
28.0 %: cytoplasmic
20.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: extracellular, including cell wall

>> prediction for AFO429 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFO429Z
3' end seq.
>AFO429Z.Seq
----------TTATTCATTGACTCCACTCAAGATAACACTCAAGTTCTCGAAGATGTAAA
GAAAATCGCTACCTCACAAAAAGGTAATGCCGTTTTCTGTTGGGTCGATATGAAGAAATT
CCCACAACAAGCAACTCATATGGGTCTCTCTGGTAAAGTTGTTCCAGCCATCTCTGTTGA
TTCAGTTGCCAATAAAGCTCGTTACAATTTCGATGAAAAAGAAACCTTCTCATTCGATAC
CGTCTCCAAATGGATCCAAGATGTCATTGGTGGTAAAGTTTCTCCATTTGTTAAATCTCA
ACCAGAACCAGAATCAAATGATGCTCCAGTTAAGGTTGCCGTTGGTACCACTTTCAAAAA
GTTGGTTTTAGACTCACCAAAGGATGTTTTGGTTGAATTCTACGCTCCATGGTGCGGTCA
TTGCAAGAATCTTGCTCCAATCTACGATAAATTAGGTGAATACTTAAAAGACGTTGAATC
TGTCTCAATCGTAAAGATTGATGCCGACTCAAATGATGTACCAAGTGATATCGAAATTAG
AGGTTACCCAACCATCATGCTCTTCAAAGCTGATGACAAAGAAAATCCAATCTCTTATGA
AGGTCAAAGAAATGATCATATGAACTTTGTTGAATTCATTCAAGATAACGCTGCCATTGA
ATTCAAATNNCCATCATCNC
Length of 3' end seq. 670
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -