>VHK596 (VHK596Q) /CSM/VH/VHK5-D/VHK596Q.Seq.d/
XXXXXXXXXXCAAATAACACTTTTATAATTTCAAATAGTAGTGTACAAGGTAGTGGTGTA
ATTAATTCATCAATTTCATCAAATGGTGGATCAAGTTATGGTAACGATACAATCACAAAC
TTGGATATTAATGGTAATTTAGAATCAAATGAAGATGAATTTATATTTACATTGGATGGT
AAAAACTCTACAACTATTAATATTGGTAATAATGCAACCATTACAAATGCTACTTTAATC
ATTAGAGTTAGTAATGATATTGTAAATTCAACCCAAAATACAACATTGGTAACAAGTTCA
AATTTGGATGCAACCTTTTCAAAAATTGTTTTTCAATCATATGATCCAGAAACTGGAATT
CAAAAACAATTGGATGATTGTGCTCATAAAATTAAAAATGATAAAGGTACTCTTGGATTA
TTATTAAATTCAAATGCTAAACAATGTGTAATAGTTTCCACTACAAGTAGTGGTACAGGT
GGTGGCACAGGTGGTGGTACAGGTGGTAGTACAGGTGGTGGTACAAGTGGTAGTACAGGT
GGAGGTACAGGTGGTACAGGTGGAGGTACAGGCCAAACTGTTGTGGTTGTTGAAGAAGAT
CAAAAGAGCTCATTAAGTGCTGGTGCAATTGCTGGTATTATTGTAGGTATCGTTTGTGTT
GCTGGTATTGTTGGTGTAATTAT

---NNTFIISNSSVQGSGVINSSISSNGGSSYGNDTITNLDINGNLESNEDEFIFTLDGK
NSTTINIGNNATITNATLIIRVSNDIVNSTQNTTLVTSSNLDATFSKIVFQSYDPETGIQ
KQLDDCAHKIKNDKGTLGLLLNSNAKQCVIVSTTSSGTGGGTGGGTGGSTGGGTSGSTGG
GTGGTGGGTGQTVVVVEEDQKSSLSAGAIAGIIVGIVCVAGIVGVI

Frame A:
---k*hfynfk**ctr*wcn*finfikwwiklw*rynhklgy*w*frik*r*iyiyigw*
klyny*yw**cnhykcyfnh*s***yckfnpkynignkfkfgcnlfkncfsii*srnwns
ktig*lcs*n*k**ryswiiikfkc*tmcnsfhyk*wyrwwhrwwyrw*yrwwykw*yrw
ryrwyrwryrpnccgc*rrskelikcwcncwyycryrlccwycwcny


Frame B:
---NNTFIISNSSVQGSGVINSSISSNGGSSYGNDTITNLDINGNLESNEDEFIFTLDGK
NSTTINIGNNATITNATLIIRVSNDIVNSTQNTTLVTSSNLDATFSKIVFQSYDPETGIQ
KQLDDCAHKIKNDKGTLGLLLNSNAKQCVIVSTTSSGTGGGTGGGTGGSTGGGTSGSTGG
GTGGTGGGTGQTVVVVEEDQKSSLSAGAIAGIIVGIVCVAGIVGVI


Frame C:
---itll*fqivvykvvv*lihqfhqmvdqvmvtiqsqtwilmvi*nqmkmnlylhwmvk
tlqllilvimqplqmll*slelvmil*iqpkiqhw*qvqiwmqpfqklffnhmiqklefk
nnwmivliklkmikvlldyy*iqmlnnv**fplqvvvqvvaqvvvqvvvqvvvqvvvqve
vqvvqvevqakllwllkkikrah*vlvqllvll*vsfvllvllv*l

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHK596 (VHK596Q) /CSM/VH/VHK5-D/VHK596Q.Seq.d/                        932   0.0
VHH794 (VHH794Q) /CSM/VH/VHH7-D/VHH794Q.Seq.d/                        932   0.0
VHH521 (VHH521Q) /CSM/VH/VHH5-A/VHH521Q.Seq.d/                        932   0.0
VHE339 (VHE339Q) /CSM/VH/VHE3-B/VHE339Q.Seq.d/                        932   0.0
VHD329 (VHD329Q) /CSM/VH/VHD3-B/VHD329Q.Seq.d/                        932   0.0
VHC580 (VHC580Q) /CSM/VH/VHC5-D/VHC580Q.Seq.d/                        932   0.0
VHA340 (VHA340Q) /CSM/VH/VHA3-B/VHA340Q.Seq.d/                        932   0.0
VHJ262 (VHJ262Q) /CSM/VH/VHJ2-C/VHJ262Q.Seq.d/                        924   0.0
VHL427 (VHL427Q) /CSM/VH/VHL4-B/VHL427Q.Seq.d/                        916   0.0
VHH520 (VHH520Q) /CSM/VH/VHH5-A/VHH520Q.Seq.d/                        912   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence.    34   2e-07  12
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    38   3e-06  17
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    48   6e-05  17
AC115612|AC115612.2 Dictyostelium discoideum chromosome 2 map 6245135-6357017 strain AX4, complete sequence.    34   9e-05  12
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    34   2e-04  15
AC117072|AC117072.3 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    38   2e-04  14
AL844505|AL844505.1 Plasmodium falciparum chromosome  6.           32   3e-04  19
AC117081|AC117081.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    34   3e-04  14
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    34   4e-04  16
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    34   6e-04  18

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000647_1382(CP000647|pid:none) Klebsiella pneumoniae subsp. pn...    34   3.6
CP000568_3082(CP000568|pid:none) Clostridium thermocellum ATCC 2...    34   4.7
AY698035_1(AY698035|pid:none) Desmognathus marmoratus isolate 69...    33   6.1
AC116957_68(AC116957|pid:none) Dictyostelium discoideum chromoso...    33   8.0
AY612344_1(AY612344|pid:none) Desmognathus marmoratus voucher KH...    33   8.0

 psg: 0.85  gvh: 0.39  alm: 0.16  top: 0.67  tms: 0.07  mit: 0.30  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.02  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: cytoplasmic
	 20.0 %: nuclear
	 16.0 %: vesicles of secretory system
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for VHK596 is cyt

>VHK596Z.Seq
NNNNNNNNNNCAAATAACACTTTTATAATTTCAAATAGTAGTGTACAAGGTAGTGGTGTA
ATTAATTCATCAATTTCATCAAATGGTGGATCAAGTTATGGTAACGATACAATCACAAAC
TTGGATATTAATGGTAATTTAGAATCAAATGAAGATGAATTTATATTTACATTGGATGGT
AAAAACTCTACAACTATTAATATTGGTAATAATGCAACCATTACAAATGCTACTTTAATC
ATTAGAGTTAGTAATGATATTGTAAATTCAACCCAAAATACAACATTGGTAACAAGTTCA
AATTTGGATGCAACCTTTTCAAAAATTGTTTTTCAATCATATGATCCAGAAACTGGAATT
CAAAAACAATTGGATGATTGTGCTCATAAAATTAAAAATGATAAAGGTACTCTTGGATTA
TTATTAAATTCAAATGCTAAACAATGTGTAATAGTTTCCACTACAAGTAGTGGTACAGGT
GGTGGCACAGGTGGTGGTACAGGTGGTAGTACAGGTGGTGGTACAAGTGGTAGTACAGGT
GGAGGTACAGGTGGTACAGGTGGAGGTACAGGCCAAACTGTTGTGGTTGTTGAAGAAGAT
CAAAAGAGCTCATTAAGTGCTGGTGCAATTGCTGGTATTATTGTAGGTATCGTTTGTGTT
GCTGGTATTGTTGGTGTAATTAT