>VHK492 (VHK492Q) /CSM/VH/VHK4-D/VHK492Q.Seq.d/
XXXXXXXXXXGTGCCAATATCTTCGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAA
ATTNAAGATTCTTTCGTTGGTGCTTTCCAATGGGCCGCCAAAGAAGGTGTTGTTTGTGAT
GAAAACATGAGAGGTATCCG

---ANIFVNVTKGVQYLNEIXDSFVGAFQWAAKEGVVCDENMRGI

Frame A:
---cqylrqchqrcsife*nxrffrwcfpmgrqrrccl**kheryp


Frame B:
---ANIFVNVTKGVQYLNEIXDSFVGAFQWAAKEGVVCDENMRGI


Frame C:
---pisssmspkvfni*mkxkilslvlsngppkkvlfvmkt*evs

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHK492 (VHK492Q) /CSM/VH/VHK4-D/VHK492Q.Seq.d/                        252   1e-66
VHF635 (VHF635Q) /CSM/VH/VHF6-B/VHF635Q.Seq.d/                        244   3e-64
VHF679 (VHF679Q) /CSM/VH/VHF6-D/VHF679Q.Seq.d/                        238   2e-62
VHF610 (VHF610Q) /CSM/VH/VHF6-A/VHF610Q.Seq.d/                        238   2e-62
VHF545 (VHF545Q) /CSM/VH/VHF5-B/VHF545Q.Seq.d/                        238   2e-62
VHF473 (VHF473Q) /CSM/VH/VHF4-D/VHF473Q.Seq.d/                        238   2e-62
VHF855 (VHF855Q) /CSM/VH/VHF8-C/VHF855Q.Seq.d/                        236   7e-62
VHF803 (VHF803Q) /CSM/VH/VHF8-A/VHF803Q.Seq.d/                        236   7e-62
VHF740 (VHF740Q) /CSM/VH/VHF7-B/VHF740Q.Seq.d/                        232   1e-60
VHF411 (VHF411Q) /CSM/VH/VHF4-A/VHF411Q.Seq.d/                        232   1e-60

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M26017|M26017.1 D.discoideum elongation factor 2 mRNA, complete cds.   220   4e-54  1
CK149257|CK149257.1 3017HFEX11E1 BgORESTES schistosome-exposed NHM 3017 Head/foot Biomphalaria glabrata cDNA clone ZB9166 similar to Elongation factor 2, mRNA sequence.    54   1e-11  2
AB023579|AB023579.1 Plasmodium falciparum gene for elongation factor 2, partial cds.    76   1e-10  1
AE014824|AE014824.1 Plasmodium falciparum 3D7 chromosome 14 section 9 of 13 of the complete sequence.    76   1e-10  1
BG893981|BG893981.1 kt22d04.y1 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q61509 Q61509 EUKARYOTIC TRANSLATION ELONGATION FACTOR 2 ;, mRNA sequence.    72   2e-09  1
CD525222|CD525222.1 kw13h12.y1 Strongyloides ratti PA female naive pAMP1 v1 Strongyloides ratti cDNA 5' similar to SW:EF2_CAEEL P29691 ELONGATION FACTOR 2 ;, mRNA sequence.    72   2e-09  1
BI502325|BI502325.1 kt88b08.y1 Strongyloides ratti L2 pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:EF2_CAEEL P29691 ELONGATION FACTOR 2 ;, mRNA sequence.    72   2e-09  1
BI324290|BI324290.1 kt56e07.y1 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:EF2_CAEEL P29691 ELONGATION FACTOR 2 ;, mRNA sequence.    72   2e-09  1
CK656761|CK656761.1 3017HOUN20B7 BgORESTES unexposed NHM 3017 Haemopoietic organ Biomphalaria glabrata cDNA clone ZBA0188 similar to elongation factor-2, mRNA sequence.    46   3e-09  2
BP515431|BP515431.1 Hydra magnipapillata cDNA, clone:hmp_11111.    68   3e-08  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY305513_1(AY305513|pid:none) Nebalia hessleri voucher Nhe elong...    70   3e-11
AY069933_1(AY069933|pid:none) Rana sylvatica eukaryotic translat...    70   3e-11
BC077595_1(BC077595|pid:none) Xenopus laevis translation elongat...    69   4e-11
AY305506_1(AY305506|pid:none) Libinia emarginata voucher Lem elo...    69   4e-11
AY305512_1(AY305512|pid:none) Neogonodactylus oerstedii voucher ...    69   5e-11
BC089730_1(BC089730|pid:none) Xenopus tropicalis MGC108369 prote...    68   1e-10
AY305507_1(AY305507|pid:none) Limnadia lenticularis voucher Lle ...    68   1e-10
AF240824_1(AF240824|pid:none) Nipponopsalis abei elongation fact...    68   1e-10
AY305508_1(AY305508|pid:none) Loxothylacus texanus voucher Lox e...    67   1e-10
BC063919_1(BC063919|pid:none) Xenopus tropicalis eukaryotic tran...    67   1e-10

 psg: 0.67  gvh: 0.29  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for VHK492 is nuc

>VHK492Z.Seq
NNNNNNNNNNGTGCCAATATCTTCGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAA
ATTNAAGATTCTTTCGTTGGTGCTTTCCAATGGGCCGCCAAAGAAGGTGTTGTTTGTGAT
GAAAACATGAGAGGTATCCG