VHK472
Library VH
(Link to library)
Clone ID VHK472
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16349-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VHK472 (VHK472Q) /CSM/VH/VHK4-C/VHK472Q.Seq.d/
XXXXXXXXXXAATGTTCATCAGTCGATTCAATTAGTAATTTACCAACCNCAATGCAATTA
TTCGCTGGTATTAAAAGTATTTGCACAGAGATGGCAATGGATGGTTGTGAGAAATGTTCA
GGAAATTCACCAACTACCACCTGTGATGTTTTGCCAGTTTACTCCTCCCTTTGTATGGCT
ATGCCTGATATGTCACAATGTGCCAATTGGACCAAGATGTGTTCCTCCTCTGGTCAACTC
TACAACTCTCAAATCACATCAGACTATTGTGTCGCCTCTGTTGCTGACGCCGTTCCAATC
ATGAGAATGTACTTTCACACTGGTATCTTGGACTATATCCTCTTTAAATCTTGGGTACCA
AGAACTGACCGTCAATTTGCTGGTTCATGGTT
sequence update 2002. 9.10
Translated Amino Acid sequence
---CSSVDSISNLPTXMQLFAGIKSICTEMAMDGCEKCSGNSPTTTCDVLPVYSSLCMAM
PDMSQCANWTKMCSSSGQLYNSQITSDYCVASVADAVPIMRMYFHTGILDYILFKSWVPR
TDRQFAGSW


Translated Amino Acid sequence (All Frames)
Frame A:
---mfisrfn**ftnxnaiirwy*kylhrdgngwl*emfrkftnyhl*cfaslllplygy
a*yvtmcqldqdvfllwstlqlsnhirllcrlcc*rrsnhenvlshwylglypl*ilgtk
n*psicwfmv


Frame B:
---CSSVDSISNLPTXMQLFAGIKSICTEMAMDGCEKCSGNSPTTTCDVLPVYSSLCMAM
PDMSQCANWTKMCSSSGQLYNSQITSDYCVASVADAVPIMRMYFHTGILDYILFKSWVPR
TDRQFAGSW


Frame C:
---vhqsiqlviyqpqcnyslvlkvfaqrwqwmvvrnvqeihqlppvmfcqftppfvwlc
lichnvpigprcvpplvnsttlkshqtivspllltpfqs*ectftlvswtisslnlgyqe
ltvnllvhg


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHQ291 (VHQ291Q) /CSM/VH/VHQ2-D/VHQ291Q.Seq.d/ 751 0.0
VHP801 (VHP801Q) /CSM/VH/VHP8-A/VHP801Q.Seq.d/ 751 0.0
VHP209 (VHP209Q) /CSM/VH/VHP2-A/VHP209Q.Seq.d/ 751 0.0
VHN890 (VHN890Q) /CSM/VH/VHN8-D/VHN890Q.Seq.d/ 751 0.0
VHM772 (VHM772Q) /CSM/VH/VHM7-C/VHM772Q.Seq.d/ 751 0.0
VHK472 (VHK472Q) /CSM/VH/VHK4-C/VHK472Q.Seq.d/ 751 0.0
VHE424 (VHE424Q) /CSM/VH/VHE4-A/VHE424Q.Seq.d/ 751 0.0
VHA195 (VHA195Q) /CSM/VH/VHA1-D/VHA195Q.Seq.d/ 751 0.0
VFF667 (VFF667Q) /CSM/VF/VFF6-C/VFF667Q.Seq.d/ 751 0.0
VFC744 (VFC744Q) /CSM/VF/VFC7-B/VFC744Q.Seq.d/ 751 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AJ315489|AJ315489.1 Dictyostelium discoideum mRNA for p80 protein. 751 0.0 1
AC098538|AC098538.6 Rattus norvegicus clone CH230-92N23, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces. 38 0.47 2
AC124363|AC124363.3 Mus musculus chromosome UNK clone RP24-531A9, WORKING DRAFT SEQUENCE, 2 unordered pieces. 32 0.56 7
AC139711|AC139711.4 Mus musculus BAC clone RP23-362F21 from chromosome 19, complete sequence. 34 1.8 5
AC133376|AC133376.2 Rattus norvegicus clone CH230-168M22, WORKING DRAFT SEQUENCE, 2 unordered pieces. 38 1.8 6
BQ973553|BQ973553.1 QHI13C15.yg.ab1 QH_ABCDI sunflower RHA801 Helianthus annuus cDNA clone QHI13C15, mRNA sequence. 32 4.6 2
BM537583|BM537583.1 ha84b07.g1 Canis cDNAs from testes cells Canis familiaris cDNA clone ha84b07 5', mRNA sequence. 34 5.0 2
AC018294|AC018294.1 Drosophila melanogaster, *** SEQUENCING IN PROGRESS ***, in ordered pieces. 42 5.8 1
AC007770|AC007770.5 Drosophila melanogaster, chromosome 3R, region 86C-86C, BAC clone BACR03J13, complete sequence. 42 5.8 1
AE003687|AE003687.3 Drosophila melanogaster chromosome 3R, section 25 of 118 of the complete sequence. 42 5.8 1
dna update 2004. 3.12
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q7YXD4) RecName: Full=Protein P80; AltName: Full=Endosomal memb... 265 3e-70
DQ646486_1(DQ646486|pid:none) Chlamydomonas reinhardtii transmem... 64 1e-09
CP000569_174(CP000569|pid:none) Actinobacillus pleuropneumoniae ... 32 9.1
(Q7ZXL5) RecName: Full=Protein kinase C-binding protein NELL2; A... 32 9.1
BX901933_2(BX901933|pid:none) Zebrafish DNA sequence from clone ... 32 9.1
AE010300_3845(AE010300|pid:none) Leptospira interrogans serovar ... 32 9.1

protein update 2009. 3.13
PSORT

psg: 0.75 gvh: 0.49 alm: 0.43 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: nuclear
36.0 %: cytoplasmic
12.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: endoplasmic reticulum

>> prediction for VHK472 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VHK472Z
3' end seq.
>VHK472Z.Seq
NNNNNNNNNNAATGTTCATCAGTCGATTCAATTAGTAATTTACCAACCNCAATGCAATTA
TTCGCTGGTATTAAAAGTATTTGCACAGAGATGGCAATGGATGGTTGTGAGAAATGTTCA
GGAAATTCACCAACTACCACCTGTGATGTTTTGCCAGTTTACTCCTCCCTTTGTATGGCT
ATGCCTGATATGTCACAATGTGCCAATTGGACCAAGATGTGTTCCTCCTCTGGTCAACTC
TACAACTCTCAAATCACATCAGACTATTGTGTCGCCTCTGTTGCTGACGCCGTTCCAATC
ATGAGAATGTACTTTCACACTGGTATCTTGGACTATATCCTCTTTAAATCTTGGGTACCA
AGAACTGACCGTCAATTTGCTGGTTCATGGTT
Length of 3' end seq. 392
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -