AFO393
Library AF
(Link to library)
Clone ID AFO393
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16259-1
Original site URL
Representative seq. ID AFO393P
(Link to Original site)
Representative DNA sequence
>AFO393 (AFO393Q) /CSM/AF/AFO3-D/AFO393Q.Seq.d/
TTTCAATCAGTGGTCAAAACTTTTGGATCGATAAAAAGGTTATCAGTGTAAAATTGGGTG
AGGATGATCTTAGTGCTTCAATTACTTCAAGTGATACATCAAAAATTTTAATTGACTATG
ATTCAAAATATTCTTCAAACTCATCGTTACTTATTACTGTCGGTGGTAATTCCCAAACTG
CTGCTTATTATGTTACAATCCCTTCATATCCTCAAGCAATTGATAAATCTGTTTCTAAAG
GAACTGGTGGTCTAATCACTATCTCTGGTAAATGCTTAAAAGGATCTGGTCCATCTGTTA
CATCTGTTTTAGTAGGTGCATACACATGTGCTGTTGTTGGTGCTCAAATATCAACAGAAA
TAATGTGTCAATTACCACCTGCTTCAAAAGAGAATGGTTCAAAGGATCTAAAAGTTGTTA
TTACTATAGATGGTATTAAAAATACCAATCAATTATTATACTCTTATGGAATACCACAAA
TTACCAAAATTGACCAAAAACCAGGAGCATCTTTATTCACTATTACCGGTTCAAACTTGG
GTAAAACCGATTCAGTTATTCGTGTTGCAACAGGTGGCTCTCCAACCCCATTTGACCTTT
CTGTTGTAGGTTTTGATGATGAAAAGGAATCTTATTTAACATTTAACTTACCAACAAACT
CATCAAAGAGXXXXXXXXXXCAACTGTGACAAATTAAAGGTTCATTCTTTAATAAAAAGG
ACACTGGTTTGAAAATTATGGTTGGAAAATCATTCATGTGATTCTTTGACTATTGTAGAT
ACCCAAACACTTACTTGCTNTGCTCCACCAGGAAGTGGTATTAAAAATGCTGTTTCATTC
ATGGTTAAAGATGCTGAATCAAAATTATCACCACCATTGTTTTTAGATTATAGTCCACCA
ACCATTATGTCATCAACAAGTGTAAAACAAGTTGAAGGTGGTCAAGTTACTATTTATGGT
ACCAATTTTGAAAATACTTTGATTACAGTAAATGTTGGAAGTAAATCATGTGAAGATGTT
TCTGTAATAGATTCAACCAAACTTACTTGTTCAATTTCAAAATCAACAATAGATCCTTCA
TTAACAAATAAGAAATTGGCCGTAAATGTTACTGTAAATGGTCAATCTGCTAATGGTGAA
GTATTTGAATATGATAATGAAGCACTCAATACTGAAACTCCTAAACCAACATTAGCACCA
ACTATAAAACCAACTGAAAAACCAACTGAAAAACCAACTGAAAAACCAACAACATCTCCA
ATAGATAAACACATNAAAATAGTTCTTCTAAAATTTCTATTCATNATTTTATTTTCTCAN
T
sequence update 2001. 6. 1
Translated Amino Acid sequence
SISGQNFWIDKKVISVKLGEDDLSASITSSDTSKILIDYDSKYSSNSSLLITVGGNSQTA
AYYVTIPSYPQAIDKSVSKGTGGLITISGKCLKGSGPSVTSVLVGAYTCAVVGAQISTEI
MCQLPPASKENGSKDLKVVITIDGIKNTNQLLYSYGIPQITKIDQKPGASLFTITGSNLG
KTDSVIRVATGGSPTPFDLSVVGFDDEKESYLTFNLPTNSSK---

---NCDKLKVHSLIKRTLV*klwlenhscdsltivdtqtltcxappgsgiknavsfmvkd
aesklspplfldyspptimsstsvkqveggqvtiygtnfentlitvnvgskscedvsvid
stkltcsiskstidpsltnkklavnvtvngqsangevfeydnealntetpkptlaptikp
tekptekptekpttspidkhxkivllkflfxilfsx


Translated Amino Acid sequence (All Frames)
Frame A:
fqsvvktfgsikrlsv*nwvrmilvlqllqvihqkf*ltmiqnilqthrylllsvvipkl
llimlqslhilkqlinlflkelvv*slslvna*kdlvhllhlf**vhthvlllvlkyqqk
*cvnyhllqkrmvqri*kllll*mvlkipinyytlmeyhklpkltknqehlysllpvqtw
vkpiqlfvlqqvalqphltfll*vlmmkrnli*hltyqqthqr---

---ql*qikgsffnkkdtglkimvgksfm*ffdycrypntyllcstrkwy*kccfihg*r
c*ikiittivfrl*stnhyvinkckts*rwssyylwyqf*kyfdyskcwk*im*rcfcnr
fnqtylfnfkinnrsfink*eigrkcyckwsic*w*si*i***stqy*ns*tnistnykt
n*ktn*ktn*ktnnisnr*thxnssskisihxfifs

Frame B:
fnqwsklldr*kgyqckig*g*s*cfnyfk*yiknfn*l*fkiffklivtyycrw*fpnc
cllcynpfisssn**icf*rnwwsnhylw*mlkriwsicyicfsrcihmcccwcsninrn
nvsittcfkrewfkgskscyyyrwy*kyqsiiillwnttnyqn*pktrsifihyyrfklg
*nrfsysccnrwlsnpi*pfccrf***kgilfni*ltnklike---

---NCDKLKVHSLIKRTLV*klwlenhscdsltivdtqtltcxappgsgiknavsfmvkd
aesklspplfldyspptimsstsvkqveggqvtiygtnfentlitvnvgskscedvsvid
stkltcsiskstidpsltnkklavnvtvngqsangevfeydnealntetpkptlaptikp
tekptekptekpttspidkhxkivllkflfxilfsx

Frame C:
SISGQNFWIDKKVISVKLGEDDLSASITSSDTSKILIDYDSKYSSNSSLLITVGGNSQTA
AYYVTIPSYPQAIDKSVSKGTGGLITISGKCLKGSGPSVTSVLVGAYTCAVVGAQISTEI
MCQLPPASKENGSKDLKVVITIDGIKNTNQLLYSYGIPQITKIDQKPGASLFTITGSNLG
KTDSVIRVATGGSPTPFDLSVVGFDDEKESYLTFNLPTNSSK---

---tvtn*rfil**kghwfenygwkiihvil*ll*ipkhllaxlhqevvlkmlfhswlkm
lnqnyhhhcf*iivhqplchqqv*nklkvvkllfmvpilkil*lq*mlevnhvkmfl**i
qpnllvqfqnqq*ilh*qirnwp*mll*mvnllmvkylnmimkhsilkllnqh*hql*nq
lknqlknqlknqqhlq*intxk*ff*nfysxfyflx

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFO393 (AFO393Q) /CSM/AF/AFO3-D/AFO393Q.Seq.d/ 2305 0.0
CFF612 (CFF612Q) /CSM/CF/CFF6-A/CFF612Q.Seq.d/ 1179 0.0
AFI888 (AFI888Q) /CSM/AF/AFI8-D/AFI888Q.Seq.d/ 1086 0.0
AFO606 (AFO606Q) /CSM/AF/AFO6-A/AFO606Q.Seq.d/ 1066 0.0
AFL794 (AFL794Q) /CSM/AF/AFL7-D/AFL794Q.Seq.d/ 1063 0.0
SLA834 (SLA834Q) /CSM/SL/SLA8-B/SLA834Q.Seq.d/ 985 0.0
SHL869 (SHL869Q) /CSM/SH/SHL8-C/SHL869Q.Seq.d/ 985 0.0
SHL365 (SHL365Q) /CSM/SH/SHL3-C/SHL365Q.Seq.d/ 985 0.0
SHL288 (SHL288Q) /CSM/SH/SHL2-D/SHL288Q.Seq.d/ 985 0.0
SHK779 (SHK779Q) /CSM/SH/SHK7-D/SHK779Q.Seq.d/ 985 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BY406898|BY406898.1 Mus musculus CRL-1722 L5178Y-R cDNA, RIKEN full-length enriched library, clone:I730064D06, 3' end partial sequence. 34 1.0 3
AW375848|AW375848.1 RC3-CT0197-220999-022-A10 CT0197 Homo sapiens cDNA, mRNA sequence. 40 1.2 2
AC112968|AC112968.3 Mus musculus clone RP24-273P12, WORKING DRAFT SEQUENCE, 11 ordered pieces. 42 2.4 3
AE017005|AE017005.1 Bacillus cereus ATCC 14579 section 8 of 18 of the complete genome. 40 2.4 9
AL080318|AL080318.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T4C9 (ESSA project). 38 2.7 4
AC015446|AC015446.4 Arabidopsis thaliana chromosome I BAC F12G12 genomic sequence, complete sequence. 38 4.2 3
AL831807|AL831807.5 Oryza sativa chromosome 12, . BAC OSJNBa0062E22 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice). 44 4.4 1
AC111717|AC111717.4 Rattus norvegicus clone CH230-60C10, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces. 44 4.4 1
AF481231|AF481231.1 Cucumis sativus PEPCK (Pepck) gene, complete cds. 44 4.4 1
BI207819|BI207819.1 EST525859 cTOS Lycopersicon esculentum cDNA clone cTOS15O11 5' end, mRNA sequence. 44 4.4 1
dna update 2003. 9.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC117076_23(AC117076|pid:none) Dictyostelium discoideum chromoso... 77 1e-12
AC116982_60(AC116982|pid:none) Dictyostelium discoideum chromoso... 68 6e-10
FJ374949_1(FJ374949|pid:none) Dictyostelium discoideum strain QS... 65 4e-09
FJ374943_1(FJ374943|pid:none) Dictyostelium discoideum strain QS... 65 7e-09
FJ374945_1(FJ374945|pid:none) Dictyostelium discoideum strain QS... 65 7e-09
FJ374931_1(FJ374931|pid:none) Dictyostelium discoideum strain QS... 65 7e-09
FJ374944_1(FJ374944|pid:none) Dictyostelium discoideum strain QS... 64 1e-08
AC115598_15(AC115598|pid:none) Dictyostelium discoideum chromoso... 64 1e-08
FJ374930_1(FJ374930|pid:none) Dictyostelium discoideum strain QS... 63 3e-08
AC116956_73(AC116956|pid:none) Dictyostelium discoideum chromoso... 63 3e-08
protein update 2009. 4.26
PSORT

psg: 0.70 gvh: 0.49 alm: 0.35 top: 0.53 tms: 0.00 mit: 0.18 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: cytoplasmic
36.0 %: nuclear
8.0 %: peroxisomal

>> prediction for AFO393 is cyt

5' end seq. ID AFO393F
5' end seq.
>AFO393F.Seq
TTTCAATCAGTGGTCAAAACTTTTGGATCGATAAAAAGGTTATCAGTGTAAAATTGGGTG
AGGATGATCTTAGTGCTTCAATTACTTCAAGTGATACATCAAAAATTTTAATTGACTATG
ATTCAAAATATTCTTCAAACTCATCGTTACTTATTACTGTCGGTGGTAATTCCCAAACTG
CTGCTTATTATGTTACAATCCCTTCATATCCTCAAGCAATTGATAAATCTGTTTCTAAAG
GAACTGGTGGTCTAATCACTATCTCTGGTAAATGCTTAAAAGGATCTGGTCCATCTGTTA
CATCTGTTTTAGTAGGTGCATACACATGTGCTGTTGTTGGTGCTCAAATATCAACAGAAA
TAATGTGTCAATTACCACCTGCTTCAAAAGAGAATGGTTCAAAGGATCTAAAAGTTGTTA
TTACTATAGATGGTATTAAAAATACCAATCAATTATTATACTCTTATGGAATACCACAAA
TTACCAAAATTGACCAAAAACCAGGAGCATCTTTATTCACTATTACCGGTTCAAACTTGG
GTAAAACCGATTCAGTTATTCGTGTTGCAACAGGTGGCTCTCCAACCCCATTTGACCTTT
CTGTTGTAGGTTTTGATGATGAAAAGGAATCTTATTTAACATTTAACTTACCAACAAACT
CATCAAAGAG----------
Length of 5' end seq. 670
3' end seq. ID AFO393Z
3' end seq.
>AFO393Z.Seq
----------CAACTGTGACAAATTAAAGGTTCATTCTTTAATAAAAAGGACACTGGTTT
GAAAATTATGGTTGGAAAATCATTCATGTGATTCTTTGACTATTGTAGATACCCAAACAC
TTACTTGCTNTGCTCCACCAGGAAGTGGTATTAAAAATGCTGTTTCATTCATGGTTAAAG
ATGCTGAATCAAAATTATCACCACCATTGTTTTTAGATTATAGTCCACCAACCATTATGT
CATCAACAAGTGTAAAACAAGTTGAAGGTGGTCAAGTTACTATTTATGGTACCAATTTTG
AAAATACTTTGATTACAGTAAATGTTGGAAGTAAATCATGTGAAGATGTTTCTGTAATAG
ATTCAACCAAACTTACTTGTTCAATTTCAAAATCAACAATAGATCCTTCATTAACAAATA
AGAAATTGGCCGTAAATGTTACTGTAAATGGTCAATCTGCTAATGGTGAAGTATTTGAAT
ATGATAATGAAGCACTCAATACTGAAACTCCTAAACCAACATTAGCACCAACTATAAAAC
CAACTGAAAAACCAACTGAAAAACCAACTGAAAAACCAACAACATCTCCAATAGATAAAC
ACATNAAAATAGTTCTTCTAAAATTTCTATTCATNATTTTATTTTCTCANT
Length of 3' end seq. 641
Connected seq. ID AFO393P
Connected seq.
>AFO393P.Seq
TTTCAATCAGTGGTCAAAACTTTTGGATCGATAAAAAGGTTATCAGTGTAAAATTGGGTG
AGGATGATCTTAGTGCTTCAATTACTTCAAGTGATACATCAAAAATTTTAATTGACTATG
ATTCAAAATATTCTTCAAACTCATCGTTACTTATTACTGTCGGTGGTAATTCCCAAACTG
CTGCTTATTATGTTACAATCCCTTCATATCCTCAAGCAATTGATAAATCTGTTTCTAAAG
GAACTGGTGGTCTAATCACTATCTCTGGTAAATGCTTAAAAGGATCTGGTCCATCTGTTA
CATCTGTTTTAGTAGGTGCATACACATGTGCTGTTGTTGGTGCTCAAATATCAACAGAAA
TAATGTGTCAATTACCACCTGCTTCAAAAGAGAATGGTTCAAAGGATCTAAAAGTTGTTA
TTACTATAGATGGTATTAAAAATACCAATCAATTATTATACTCTTATGGAATACCACAAA
TTACCAAAATTGACCAAAAACCAGGAGCATCTTTATTCACTATTACCGGTTCAAACTTGG
GTAAAACCGATTCAGTTATTCGTGTTGCAACAGGTGGCTCTCCAACCCCATTTGACCTTT
CTGTTGTAGGTTTTGATGATGAAAAGGAATCTTATTTAACATTTAACTTACCAACAAACT
CATCAAAGAG----------CAACTGTGACAAATTAAAGGTTCATTCTTTAATAAAAAGG
ACACTGGTTTGAAAATTATGGTTGGAAAATCATTCATGTGATTCTTTGACTATTGTAGAT
ACCCAAACACTTACTTGCTNTGCTCCACCAGGAAGTGGTATTAAAAATGCTGTTTCATTC
ATGGTTAAAGATGCTGAATCAAAATTATCACCACCATTGTTTTTAGATTATAGTCCACCA
ACCATTATGTCATCAACAAGTGTAAAACAAGTTGAAGGTGGTCAAGTTACTATTTATGGT
ACCAATTTTGAAAATACTTTGATTACAGTAAATGTTGGAAGTAAATCATGTGAAGATGTT
TCTGTAATAGATTCAACCAAACTTACTTGTTCAATTTCAAAATCAACAATAGATCCTTCA
TTAACAAATAAGAAATTGGCCGTAAATGTTACTGTAAATGGTCAATCTGCTAATGGTGAA
GTATTTGAATATGATAATGAAGCACTCAATACTGAAACTCCTAAACCAACATTAGCACCA
ACTATAAAACCAACTGAAAAACCAACTGAAAAACCAACTGAAAAACCAACAACATCTCCA
ATAGATAAACACATNAAAATAGTTCTTCTAAAATTTCTATTCATNATTTTATTTTCTCAN
T
Length of connected seq. 1311
Full length Seq ID -
Full length Seq. -
Length of full length seq. -