VHK322
Library VH
(Link to library)
Clone ID VHK322
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VHK322P
(Link to Original site)
Representative DNA sequence
>VHK322 (VHK322Q) /CSM/VH/VHK3-A/VHK322Q.Seq.d/
AAAAAAAACTCTCGAGTGCAAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGAT
CAAATTCGTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCAT
GTCGATCACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCC
GATAAAGTTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGT
ATCACCATTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTA
CCAGCTGGTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTT
GATTTCAGTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATC
GATTGCGTCGAAGGTGTTTGCGTACAAACCGGAACTGTATTACGTCAAGCCGTCGCTGAA
CGTAACAAACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTA
AACACTGAAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTT
GGTAACACTGAAGATAAGGAATTCGGTGATGTCACTGTATCCCCXXXXXXXXXXTCCAAA
GATGATCCAAAAGCTCGTGCTAACTATCTCGCTGATAACCACGAATGGGATAAAAATGAT
GCCATGAACATTTGGTCTTTCGGTCCAGAAGGTAACGGTGCCAATCTCCTCGTCAATGTC
ACCAAAGGTGTTCAATATTTGAATGAAATTAAAGATTCTTTCGTTGGTGCTTTCCAATGG
GCCACCAAAGAAGGTGTTGTTTGTGATGAAAACATGAGAGGTATCCGTTTCAATCTTTAT
GATGTCACCCTCCACACTGATGCCATCCACAGAGGTGGTGGTCAAATCATCCCAACTGCT
CGTCGTGTACTCTATGCTGCTGAATTAACTGCCTCCCCAACTCTCTTAGAACCAATCTAC
TTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGTGGTATTTACTCTGTACTCAATCGT
CGTAGAGGTATTGTTATTGGTGAAGAACGTCGTATCGGTTCCCCATTATTCTCTGTCAAA
GCTCATTTACCAGTATTAGAATCCTTCGGTTTCACCGCTGATTTACGTTCCCACACTGCC
GGTCAAGCTTTCCCACAATGTGTCTTCGATCATTGGGCTTCAATTGGTGTTGTCAACAAA
GATAAGAAAGCCACTGAAGTCGCTTTAGCCACCAGAAAGAGAAAAGGTTTAGCCCCAGAA
ATCCCAGATCTTGACAAATTCCACGAAAAACTCTAAACAATTTAAGTCGCACTNAGTTTT
CAAA
sequence update 2002.10.25
Translated Amino Acid sequence
KKNSRVQKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIA
DKVSGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHV
DFSSEVTAALRVTDGALVVIDCVEGVCVQTGTVLRQAVAERNKPVLFVNKVDRFLLELQL
NTEEAYLSFRRAIESVNVIVGNTEDKEFGDVTVS---

---SKDDPKARANYLADNHEWDKNDAMNIWSFGPEGNGANLLVNVTKGVQYLNEIKDSFV
GAFQWATKEGVVCDENMRGIRFNLYDVTLHTDAIHRGGGQIIPTARRVLYAAELTASPTL
LEPIYLVEITAPENAIGGIYSVLNRRRGIVIGEERRIGSPLFSVKAHLPVLESFGFTADL
RSHTAGQAFPQCVFDHWASIGVVNKDKKATEVALATRKRKGLAPEIPDLDKFHEKL*ti*
valsfq


Translated Amino Acid sequence (All Frames)
Frame A:
KKNSRVQKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIA
DKVSGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHV
DFSSEVTAALRVTDGALVVIDCVEGVCVQTGTVLRQAVAERNKPVLFVNKVDRFLLELQL
NTEEAYLSFRRAIESVNVIVGNTEDKEFGDVTVS---

---SKDDPKARANYLADNHEWDKNDAMNIWSFGPEGNGANLLVNVTKGVQYLNEIKDSFV
GAFQWATKEGVVCDENMRGIRFNLYDVTLHTDAIHRGGGQIIPTARRVLYAAELTASPTL
LEPIYLVEITAPENAIGGIYSVLNRRRGIVIGEERRIGSPLFSVKAHLPVLESFGFTADL
RSHTAGQAFPQCVFDHWASIGVVNKDKKATEVALATRKRKGLAPEIPDLDKFHEKL*ti*
valsfq

Frame B:
kktleckkk*stkwlisqsikfvplwtvvkiseicllllmsitvkplyqil*skelvllp
ikflvi*dichvvlmnksvvsplnlhlyhftskcqrktnyqlvvlhtnf*silsipqvtl
isvqk*llpsvllmvl*slsiaskvfaykpelyyvkpslnvtnqsysstksivsy*nsn*
tlkklislsvellnpsmsllvtlkirnsvmslyp---

---pkmiqklvltislittngikmmp*tfglsvqkvtvpisssmspkvfni*mklkilsl
vlsngppkkvlfvmkt*evsvsifmmspstlmpstevvvkssqllvvysmlln*lppqls
*nqst**kllpqktllvvftlysivvevlllvknvvsvphyslskliyqy*npsvspliy
vptlpvklshnvssiiglqlvlstkirkplksl*pperekv*pqksqiltnstknskqfk
shxvfk

Frame C:
kklssakkskvqng*fhnrsnschygps*kyqkyvcycscrsr*nhfirffnpkswyycr
*sfw*yeiyvmsc**trawyhh*ificitslrnakgrqitswlyftrifnqsyrfprsr*
fqfrsnccppcy*wcfsryrlrrrclrtnrncitssrr*t*qtslirqqsrsflirtpik
h*rslslfp*sy*irqchcw*h*r*gir*chcip---

---qr*skssc*lsr**prmg*k*chehlvfrsrr*rcqsprqchqrcsife*n*rffrw
cfpmghqrrccl**kherypfqsl*chpph*chpqrwwsnhpncssctlcc*inclpnsl
rtnllsrnycprkrywwyllctqss*rycyw*rtsyrfpiilcqssftsirilrfhr*ft
fphcrssfptmclrslgfnwccqqr*esh*srfshqkekrfsprnprs*qiprktlnnls
rtxfs

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHK322 (VHK322Q) /CSM/VH/VHK3-A/VHK322Q.Seq.d/ 2625 0.0
VHO711 (VHO711Q) /CSM/VH/VHO7-A/VHO711Q.Seq.d/ 1441 0.0
VHK672 (VHK672Q) /CSM/VH/VHK6-C/VHK672Q.Seq.d/ 1441 0.0
VHK338 (VHK338Q) /CSM/VH/VHK3-B/VHK338Q.Seq.d/ 1441 0.0
VHJ680 (VHJ680Q) /CSM/VH/VHJ6-D/VHJ680Q.Seq.d/ 1441 0.0
VHJ671 (VHJ671Q) /CSM/VH/VHJ6-C/VHJ671Q.Seq.d/ 1441 0.0
VHJ541 (VHJ541Q) /CSM/VH/VHJ5-B/VHJ541Q.Seq.d/ 1441 0.0
VHI270 (VHI270Q) /CSM/VH/VHI2-C/VHI270Q.Seq.d/ 1441 0.0
VHH733 (VHH733Q) /CSM/VH/VHH7-B/VHH733Q.Seq.d/ 1441 0.0
VHH687 (VHH687Q) /CSM/VH/VHH6-D/VHH687Q.Seq.d/ 1441 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ445614) Dictyostelium discoideum cDNA clone:ddv60f03, 3' ... 1441 0.0 1
(BJ443368) Dictyostelium discoideum cDNA clone:ddv52o18, 3' ... 1441 0.0 1
(BJ442939) Dictyostelium discoideum cDNA clone:ddv51l09, 3' ... 1441 0.0 1
(BJ442852) Dictyostelium discoideum cDNA clone:ddv51l05, 3' ... 1441 0.0 1
(BJ442780) Dictyostelium discoideum cDNA clone:ddv50o20, 3' ... 1441 0.0 1
(BJ442687) Dictyostelium discoideum cDNA clone:ddv50m18, 3' ... 1441 0.0 1
(BJ442548) Dictyostelium discoideum cDNA clone:ddv50a11, 3' ... 1441 0.0 1
(BJ441725) Dictyostelium discoideum cDNA clone:ddv47k18, 3' ... 1441 0.0 1
(BJ441507) Dictyostelium discoideum cDNA clone:ddv46m22, 3' ... 1441 0.0 1
(BJ441285) Dictyostelium discoideum cDNA clone:ddv46b09, 3' ... 1441 0.0 1
dna update 2008.11.21
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AB171046_1(AB171046|pid:none) Macaca fascicularis brain cDNA clo... 448 e-124
FN317739_1(FN317739|pid:none) Schistosoma japonicum isolate Anhu... 346 1e-93
AY391422_1(AY391422|pid:none) Danio rerio eukaryotic translation... 305 2e-81
AY069933_1(AY069933|pid:none) Rana sylvatica eukaryotic translat... 304 4e-81
BC089730_1(BC089730|pid:none) Xenopus tropicalis MGC108369 prote... 300 6e-80
BT045031_1(BT045031|pid:none) Salmo salar clone ssal-rgf-510-120... 300 6e-80
BT071866_1(BT071866|pid:none) Salmo salar clone ssal-rgf-501-088... 300 8e-80
BT059038_1(BT059038|pid:none) Salmo salar clone ssal-rgf-521-328... 300 8e-80
BT072304_1(BT072304|pid:none) Salmo salar clone ssal-rgf-520-280... 300 1e-79
BC060707_1(BC060707|pid:none) Mus musculus eukaryotic translatio... 297 5e-79
protein update 2009. 7.15
PSORT

psg: 0.75 gvh: 0.38 alm: 0.34 top: 0.53 tms: 0.00 mit: 0.34 mip: 0.02
nuc: 0.04 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
24.0 %: mitochondrial
24.0 %: nuclear
4.0 %: vacuolar
4.0 %: endoplasmic reticulum
4.0 %: peroxisomal

>> prediction for VHK322 is cyt

5' end seq. ID VHK322F
5' end seq.
>VHK322F.Seq
AAAAAAAACTCTCGAGTGCAAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGAT
CAAATTCGTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCAT
GTCGATCACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCC
GATAAAGTTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGT
ATCACCATTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTA
CCAGCTGGTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTT
GATTTCAGTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATC
GATTGCGTCGAAGGTGTTTGCGTACAAACCGGAACTGTATTACGTCAAGCCGTCGCTGAA
CGTAACAAACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTA
AACACTGAAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTT
GGTAACACTGAAGATAAGGAATTCGGTGATGTCACTGTATCCCCNNNNNNNNNN
Length of 5' end seq. 654
3' end seq. ID VHK322Z
3' end seq.
>VHK322Z.Seq
NNNNNNNNNNTCCAAAGATGATCCAAAAGCTCGTGCTAACTATCTCGCTGATAACCACGA
ATGGGATAAAAATGATGCCATGAACATTTGGTCTTTCGGTCCAGAAGGTAACGGTGCCAA
TCTCCTCGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAATTAAAGATTCTTTCGT
TGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAACATGAGAGGTAT
CCGTTTCAATCTTTATGATGTCACCCTCCACACTGATGCCATCCACAGAGGTGGTGGTCA
AATCATCCCAACTGCTCGTCGTGTACTCTATGCTGCTGAATTAACTGCCTCCCCAACTCT
CTTAGAACCAATCTACTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGTGGTATTTA
CTCTGTACTCAATCGTCGTAGAGGTATTGTTATTGGTGAAGAACGTCGTATCGGTTCCCC
ATTATTCTCTGTCAAAGCTCATTTACCAGTATTAGAATCCTTCGGTTTCACCGCTGATTT
ACGTTCCCACACTGCCGGTCAAGCTTTCCCACAATGTGTCTTCGATCATTGGGCTTCAAT
TGGTGTTGTCAACAAAGATAAGAAAGCCACTGAAGTCGCTTTAGCCACCAGAAAGAGAAA
AGGTTTAGCCCCAGAAATCCCAGATCTTGACAAATTCCACGAAAAACTCTAAACAATTTA
AGTCGCACTNAGTTTTCAAA
Length of 3' end seq. 740
Connected seq. ID VHK322P
Connected seq.
>VHK322P.Seq
AAAAAAAACTCTCGAGTGCAAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGAT
CAAATTCGTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCAT
GTCGATCACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCC
GATAAAGTTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGT
ATCACCATTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTA
CCAGCTGGTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTT
GATTTCAGTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATC
GATTGCGTCGAAGGTGTTTGCGTACAAACCGGAACTGTATTACGTCAAGCCGTCGCTGAA
CGTAACAAACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTA
AACACTGAAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTT
GGTAACACTGAAGATAAGGAATTCGGTGATGTCACTGTATCCCC----------TCCAAA
GATGATCCAAAAGCTCGTGCTAACTATCTCGCTGATAACCACGAATGGGATAAAAATGAT
GCCATGAACATTTGGTCTTTCGGTCCAGAAGGTAACGGTGCCAATCTCCTCGTCAATGTC
ACCAAAGGTGTTCAATATTTGAATGAAATTAAAGATTCTTTCGTTGGTGCTTTCCAATGG
GCCACCAAAGAAGGTGTTGTTTGTGATGAAAACATGAGAGGTATCCGTTTCAATCTTTAT
GATGTCACCCTCCACACTGATGCCATCCACAGAGGTGGTGGTCAAATCATCCCAACTGCT
CGTCGTGTACTCTATGCTGCTGAATTAACTGCCTCCCCAACTCTCTTAGAACCAATCTAC
TTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGTGGTATTTACTCTGTACTCAATCGT
CGTAGAGGTATTGTTATTGGTGAAGAACGTCGTATCGGTTCCCCATTATTCTCTGTCAAA
GCTCATTTACCAGTATTAGAATCCTTCGGTTTCACCGCTGATTTACGTTCCCACACTGCC
GGTCAAGCTTTCCCACAATGTGTCTTCGATCATTGGGCTTCAATTGGTGTTGTCAACAAA
GATAAGAAAGCCACTGAAGTCGCTTTAGCCACCAGAAAGAGAAAAGGTTTAGCCCCAGAA
ATCCCAGATCTTGACAAATTCCACGAAAAACTCTAAACAATTTAAGTCGCACTNAGTTTT
CAAA
Length of connected seq. 1374
Full length Seq ID -
Full length Seq. -
Length of full length seq. -