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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHK294
Library VH
(Link to library)
Clone ID VHK294
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15304-1
Original site URL
Representative seq. ID VHK294P
(Link to Original site)
Representative DNA sequence 
>VHK294 (VHK294Q) /CSM/VH/VHK2-D/VHK294Q.Seq.d/
AATTTATTTCTCTACAAAGTGATTTCTTTATATGTGTTGATTGGCACATAGAAATATCTA
TTTAGAAAATATAAAATGGCTGAAAGACAATCAGCATCATCACCAACTCCTTCTTCACCA
CCACAACAACAACAACAAACACCTCAACAACCACCACAATATTTACTAAATTCAAAAAAG
AATTTTAAAGTAAAAGTATTAAATGGTAGAGAAGTTGAAAGACACCCATTAAATTCAATT
ACAAAAACAGAGGATACAGGTAAACCAAAACAATCATCATTATCATCAAATGCAAGTTCA
CTTCAATCAGCAGCAGCAGCAGCATCATCATCAACAGCAACAACAGATATTGATCCATTA
AACAACAATAATAATAATAATACAGATATTGATCCATTAAATAATCCATTAGAAAAAAAA
ACATGATCCACTTTCAGAAACAATTGCAACAATGGGTGGATTAAAATTAATAAAAGAAAA
TCATTTAACAAATTATGTTGATGAGAATTTTATGCCATGGGATACATTGAAACCATCGAT
TCTTCAACAATATACCTCTGATGATTCAAATCCAATTCAAGTTTCTTTTATGTCAACTGG
TXXXXXXXXXXTATTGCTTCATTACAATTCCATCAATTGATGATATCTTTTTAAAGATGA
ATCTTTATTTAGTCTCTTCATCTGTGGCTTTACAAAATCAAGCACTCTCTCAAGCCGATG
CTTTATTAAAGGCTGCCATCACTTTTATTCAAGAAATCCCTCCAATCTTGGAGTTTAAAC
AAGTTAAATCAACTGAAGATTGGACAATCTCTTATGTCTCTGATTTTATCTCACTTTTAG
TTGTAACTCCTGGTCATCCTGAAAGTGGTCCTTTCTATTTAGTAAAGGCTCTTTATAAAG
TCATTAAAGAATATCAATGGGAATCAAGTTCAACTGCTAAATCAAAATTATTTATTCAAT
TATTATTACTTTGTTCTTCTTGGGCACAAACTTCATTACCATATCATATTGAAAAAGTTG
AATCAAATGATCAATTATTTACAGAAGATCCAGAGTTTAATACAGAATTAACAGAATTTT
ATAATTCATTAATTAAAGAAATTTTATATGATTTAAATCTTTTGAAAGATGAACCAGATA
ATTTAACACAGAAAAAAGTTGGTATCATTTGTATTGATTTAATAAATGCATTATTAAATG
TTGGTGAATTAAATAGTAAGACAGCATCATTAATTTTCAATTTATATAATATGGCAAAGA
AAATTATACCATCAACCTGTTTCAATGAAATTACATATTTAAAGAATACTCTTGCTTTTA
TTGGAACTCTTGAATCTAAAATGGGTCAGGATATTTTTAATAAACTTTCACAACAACAAT
A
sequence update 2002.10.25
Translated Amino Acid sequence 
iyfstk*flymc*lahrniylenikwlkdnqhhhqlllhhhnnnnkhlnnhhniy*iqkr
ilk*ky*mveklkdth*iqlqkqriqvnqnnhhyhqmqvhfnqqqqqhhhqqqqqilih*
ttiiiiiqilih*iih*KKKHDPLSETIATMGGLKLIKENHLTNYVDENFMPWDTLKPSI
LQQYTSDDSNPIQVSFMSTG---

---YCFITIPSIDDIFLKMNLYLVSSSVALQNQALSQADALLKAAITFIQEIPPILEFKQ
VKSTEDWTISYVSDFISLLVVTPGHPESGPFYLVKALYKVIKEYQWESSSTAKSKLFIQL
LLLCSSWAQTSLPYHIEKVESNDQLFTEDPEFNTELTEFYNSLIKEILYDLNLLKDEPDN
LTQKKVGIICIDLINALLNVGELNSKTASLIFNLYNMAKKIIPSTCFNEITYLKNTLAFI
GTLESKMGQDIFNKLSQQQ
Translated Amino Acid sequence (All Frames) 
Frame A:
nlflykvislyvligt*kylfrkykmaerqsassptpssppqqqqqtpqqppqyllnskk
nfkvkvlngreverhplnsitktedtgkpkqsslssnasslqsaaaaassstattdidpl
nnnnnnntdidplnnplekkt*stfrnncnngwikinkrksfnklc**efyamgyietid
sstiyl**fksnssffyvnw---

---YCFITIPSIDDIFLKMNLYLVSSSVALQNQALSQADALLKAAITFIQEIPPILEFKQ
VKSTEDWTISYVSDFISLLVVTPGHPESGPFYLVKALYKVIKEYQWESSSTAKSKLFIQL
LLLCSSWAQTSLPYHIEKVESNDQLFTEDPEFNTELTEFYNSLIKEILYDLNLLKDEPDN
LTQKKVGIICIDLINALLNVGELNSKTASLIFNLYNMAKKIIPSTCFNEITYLKNTLAFI
GTLESKMGQDIFNKLSQQQ

Frame B:
iyfstk*flymc*lahrniylenikwlkdnqhhhqlllhhhnnnnkhlnnhhniy*iqkr
ilk*ky*mveklkdth*iqlqkqriqvnqnnhhyhqmqvhfnqqqqqhhhqqqqqilih*
ttiiiiiqilih*iih*KKKHDPLSETIATMGGLKLIKENHLTNYVDENFMPWDTLKPSI
LQQYTSDDSNPIQVSFMSTG---

---iaslqfhqlmisf*r*ifi*slhlwlykikhslkpmly*rlpsllfkkslqswslnk
lnqlkigqslmslilshf*l*llvilkvvlsi**rlfikslkningnqvqllnqnylfny
yyfvllghklhyhiilkklnqminylqkiqsliqn*qnfiih*lkkfymi*if*kmnqii
*hrkklvsfvli**mhy*mlvn*ivrqhh*fsiyiiwqrklyhqpvsmklhi*rilllll
ellnlkwvriflinfhnnn

Frame C:
fislqsdfficvdwhieisi*ki*ng*ktisiitnsfftttttttntsttttiftkfkke
f*sksikw*rs*ktpikfnyknrgyr*tktiiiiikckftsisssssiiinsnnry*sik
qq****yry*sik*sirkknmihfqkqlqqwvd*n**kkii*qimlmrilchgih*nhrf
fnniplmiqiqfkfllcql---

---llhynsin**ylfkdeslfslficgftksstlssrcfikgchhfysrnpsnlgv*ts
*in*rldnllcl*fyltfscnswss*kwsflfskgsl*sh*rismgikfnc*ikiiysii
itlfflgtnfitisy*ks*ik*siiyrrsrv*yrinril*fin*rnfi*fksfer*tr*f
ntekswyhly*fnkciikcw*ik**dsiinfqfi*ygkenytinlfq*nyifkeyscfyw
ns*i*ngsgyf**tfttti
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHK294 (VHK294Q) /CSM/VH/VHK2-D/VHK294Q.Seq.d/                       1982   0.0
VHO612 (VHO612Q) /CSM/VH/VHO6-A/VHO612Q.Seq.d/                       1526   0.0
VHI487 (VHI487Q) /CSM/VH/VHI4-D/VHI487Q.Seq.d/                       1526   0.0
VHH623 (VHH623Q) /CSM/VH/VHH6-A/VHH623Q.Seq.d/                       1526   0.0
VHB181 (VHB181Q) /CSM/VH/VHB1-D/VHB181Q.Seq.d/                       1526   0.0
SHG577 (SHG577Q) /CSM/SH/SHG5-D/SHG577Q.Seq.d/                       1526   0.0
AHO186 (AHO186Q) /CSM/AH/AHO1-D/AHO186Q.Seq.d/                       1520   0.0
VHH857 (VHH857Q) /CSM/VH/VHH8-C/VHH857Q.Seq.d/                       1518   0.0
AHC816 (AHC816Q) /CSM/AH/AHC8-A/AHC816Q.Seq.d/                       1518   0.0
AHB540 (AHB540Q) /CSM/AH/AHB5-B/AHB540Q.Seq.d/                       1518   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ445619) Dictyostelium discoideum cDNA clone:ddv60g04, 3' ...  1526   0.0    1
(BJ443095) Dictyostelium discoideum cDNA clone:ddv51k24, 3' ...  1526   0.0    1
(BJ441808) Dictyostelium discoideum cDNA clone:ddv47n22, 3' ...  1526   0.0    1
(BJ441260) Dictyostelium discoideum cDNA clone:ddv46m06, 3' ...  1526   0.0    1
(BJ437270) Dictyostelium discoideum cDNA clone:ddv33a21, 3' ...  1526   0.0    1
(BJ407218) Dictyostelium discoideum cDNA clone:dds37i19, 3' ...  1526   0.0    1
(BJ356299) Dictyostelium discoideum cDNA clone:dda59k21, 3' ...  1520   0.0    1
(BJ441370) Dictyostelium discoideum cDNA clone:ddv46b16, 3' ...  1518   0.0    1
(BJ349349) Dictyostelium discoideum cDNA clone:dda36p04, 3' ...  1518   0.0    1
(BJ348810) Dictyostelium discoideum cDNA clone:dda34o09, 3' ...  1518   0.0    1
dna update 2008.11.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC007154_1(BC007154|pid:none) Mus musculus RIKEN cDNA 9030624J02...   156   2e-36
BC043674_1(BC043674|pid:none) Mus musculus RIKEN cDNA 9030624J02...   156   2e-36
(Q9H0L7) RecName: Full=UPF0505 protein C16orf62; AltName: Full=E...   154   6e-36
AL136744_1(AL136744|pid:none) Homo sapiens mRNA; cDNA DKFZp434B0...   154   6e-36
AK024693_1(AK024693|pid:none) Homo sapiens cDNA: FLJ21040 fis, c...   154   6e-36
AF461052_1(AF461052|pid:none) Homo sapiens esophageal cancer ass...   154   6e-36
AK095078_1(AK095078|pid:none) Homo sapiens cDNA FLJ37759 fis, cl...   154   6e-36
AK050302_1(AK050302|pid:none) Mus musculus adult male liver tumo...   154   7e-36
(Q5R8N4) RecName: Full=UPF0505 protein C16orf62 homolog;  &CR859...   154   7e-36
(Q9VHM2) RecName: Full=UPF0505 protein CG8202;  &AE014297_821(AE...   120   2e-25
protein update 2009. 7.15
PSORT 

 psg: 0.91  gvh: 0.40  alm: 0.35  top: 0.30  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.02  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for VHK294 is cyt
5' end seq. ID VHK294F
5' end seq. 
>VHK294F.Seq
AATTTATTTCTCTACAAAGTGATTTCTTTATATGTGTTGATTGGCACATAGAAATATCTA
TTTAGAAAATATAAAATGGCTGAAAGACAATCAGCATCATCACCAACTCCTTCTTCACCA
CCACAACAACAACAACAAACACCTCAACAACCACCACAATATTTACTAAATTCAAAAAAG
AATTTTAAAGTAAAAGTATTAAATGGTAGAGAAGTTGAAAGACACCCATTAAATTCAATT
ACAAAAACAGAGGATACAGGTAAACCAAAACAATCATCATTATCATCAAATGCAAGTTCA
CTTCAATCAGCAGCAGCAGCAGCATCATCATCAACAGCAACAACAGATATTGATCCATTA
AACAACAATAATAATAATAATACAGATATTGATCCATTAAATAATCCATTAGAAAAAAAA
ACATGATCCACTTTCAGAAACAATTGCAACAATGGGTGGATTAAAATTAATAAAAGAAAA
TCATTTAACAAATTATGTTGATGAGAATTTTATGCCATGGGATACATTGAAACCATCGAT
TCTTCAACAATATACCTCTGATGATTCAAATCCAATTCAAGTTTCTTTTATGTCAACTGG
TNNNNNNNNNN
Length of 5' end seq. 611
3' end seq. ID VHK294Z
3' end seq. 
>VHK294Z.Seq
NNNNNNNNNNTATTGCTTCATTACAATTCCATCAATTGATGATATCTTTTTAAAGATGAA
TCTTTATTTAGTCTCTTCATCTGTGGCTTTACAAAATCAAGCACTCTCTCAAGCCGATGC
TTTATTAAAGGCTGCCATCACTTTTATTCAAGAAATCCCTCCAATCTTGGAGTTTAAACA
AGTTAAATCAACTGAAGATTGGACAATCTCTTATGTCTCTGATTTTATCTCACTTTTAGT
TGTAACTCCTGGTCATCCTGAAAGTGGTCCTTTCTATTTAGTAAAGGCTCTTTATAAAGT
CATTAAAGAATATCAATGGGAATCAAGTTCAACTGCTAAATCAAAATTATTTATTCAATT
ATTATTACTTTGTTCTTCTTGGGCACAAACTTCATTACCATATCATATTGAAAAAGTTGA
ATCAAATGATCAATTATTTACAGAAGATCCAGAGTTTAATACAGAATTAACAGAATTTTA
TAATTCATTAATTAAAGAAATTTTATATGATTTAAATCTTTTGAAAGATGAACCAGATAA
TTTAACACAGAAAAAAGTTGGTATCATTTGTATTGATTTAATAAATGCATTATTAAATGT
TGGTGAATTAAATAGTAAGACAGCATCATTAATTTTCAATTTATATAATATGGCAAAGAA
AATTATACCATCAACCTGTTTCAATGAAATTACATATTTAAAGAATACTCTTGCTTTTAT
TGGAACTCTTGAATCTAAAATGGGTCAGGATATTTTTAATAAACTTTCACAACAACAATA
Length of 3' end seq. 780
Connected seq. ID VHK294P
Connected seq. 
>VHK294P.Seq
AATTTATTTCTCTACAAAGTGATTTCTTTATATGTGTTGATTGGCACATAGAAATATCTA
TTTAGAAAATATAAAATGGCTGAAAGACAATCAGCATCATCACCAACTCCTTCTTCACCA
CCACAACAACAACAACAAACACCTCAACAACCACCACAATATTTACTAAATTCAAAAAAG
AATTTTAAAGTAAAAGTATTAAATGGTAGAGAAGTTGAAAGACACCCATTAAATTCAATT
ACAAAAACAGAGGATACAGGTAAACCAAAACAATCATCATTATCATCAAATGCAAGTTCA
CTTCAATCAGCAGCAGCAGCAGCATCATCATCAACAGCAACAACAGATATTGATCCATTA
AACAACAATAATAATAATAATACAGATATTGATCCATTAAATAATCCATTAGAAAAAAAA
ACATGATCCACTTTCAGAAACAATTGCAACAATGGGTGGATTAAAATTAATAAAAGAAAA
TCATTTAACAAATTATGTTGATGAGAATTTTATGCCATGGGATACATTGAAACCATCGAT
TCTTCAACAATATACCTCTGATGATTCAAATCCAATTCAAGTTTCTTTTATGTCAACTGG
T----------TATTGCTTCATTACAATTCCATCAATTGATGATATCTTTTTAAAGATGA
ATCTTTATTTAGTCTCTTCATCTGTGGCTTTACAAAATCAAGCACTCTCTCAAGCCGATG
CTTTATTAAAGGCTGCCATCACTTTTATTCAAGAAATCCCTCCAATCTTGGAGTTTAAAC
AAGTTAAATCAACTGAAGATTGGACAATCTCTTATGTCTCTGATTTTATCTCACTTTTAG
TTGTAACTCCTGGTCATCCTGAAAGTGGTCCTTTCTATTTAGTAAAGGCTCTTTATAAAG
TCATTAAAGAATATCAATGGGAATCAAGTTCAACTGCTAAATCAAAATTATTTATTCAAT
TATTATTACTTTGTTCTTCTTGGGCACAAACTTCATTACCATATCATATTGAAAAAGTTG
AATCAAATGATCAATTATTTACAGAAGATCCAGAGTTTAATACAGAATTAACAGAATTTT
ATAATTCATTAATTAAAGAAATTTTATATGATTTAAATCTTTTGAAAGATGAACCAGATA
ATTTAACACAGAAAAAAGTTGGTATCATTTGTATTGATTTAATAAATGCATTATTAAATG
TTGGTGAATTAAATAGTAAGACAGCATCATTAATTTTCAATTTATATAATATGGCAAAGA
AAATTATACCATCAACCTGTTTCAATGAAATTACATATTTAAAGAATACTCTTGCTTTTA
TTGGAACTCTTGAATCTAAAATGGGTCAGGATATTTTTAATAAACTTTCACAACAACAAT
A
Length of connected seq. 1371
Full length Seq ID -
Full length Seq. -
Length of full length seq. -