VHK285
Library VH
(Link to library)
Clone ID VHK285
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VHK285 (VHK285Q) /CSM/VH/VHK2-D/VHK285Q.Seq.d/
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTGAAGATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA
TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG
GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA
GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG
TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA
AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence
LSSAKKVKYKMVNFTIDQIRAIMDRREDIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKV
SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFS
SEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFL---


Translated Amino Acid sequence (All Frames)
Frame A:
nsrvqkk*stkwlisqsikfvplwtvvkiseicllllmsitvkplyqil*skelvllpik
flvi*dichvvlmnksvvsplnlhlyhftskcqrktnyqlvvlhtnf*silsipqvtlis
vqk*llpsvllmvl*slsiaskvfaykpklyyvkpslnvsnqsysstksivsy---


Frame B:
tleckkskvqng*fhnrsnschygps*ryqkyvcycscrsr*nhfirffnpkswyycr*s
fw*yeiyvmsc**trawyhh*ificitslrnakgrqitswlyftrifnqsyrfprsr*fq
frsnccppcy*wcfsryrlrrrclrtnrncitssrr*tyqtslirqqsrsfli---


Frame C:
LSSAKKVKYKMVNFTIDQIRAIMDRREDIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKV
SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFS
SEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFL---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHL709 (VHL709Q) /CSM/VH/VHL7-A/VHL709Q.Seq.d/ 993 0.0
VHK285 (VHK285Q) /CSM/VH/VHK2-D/VHK285Q.Seq.d/ 993 0.0
VHP874 (VHP874Q) /CSM/modify/h12/F/treated/VHP874Q.Seq.d/ 985 0.0
VHH874 (VHH874Q) /CSM/VH/VHH8-D/VHH874Q.Seq.d/ 985 0.0
VHG874 (VHG874Q) /CSM/VH/VHG8-D/VHG874Q.Seq.d/ 985 0.0
VHP874 (VHP874Q) /CSM/modify/h12/F/treated/VHP874Q.Seq.d/ 985 0.0
VHH874 (VHH874Q) /CSM/VH/VHH8-D/VHH874Q.Seq.d/ 985 0.0
VHG874 (VHG874Q) /CSM/VH/VHG8-D/VHG874Q.Seq.d/ 985 0.0
VHQ476 (VHQ476Q) /CSM/VH/VHQ4-D/VHQ476Q.Seq.d/ 985 0.0
VHQ473 (VHQ473Q) /CSM/VH/VHQ4-D/VHQ473Q.Seq.d/ 985 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ424907) Dictyostelium discoideum cDNA clone:ddv54b03, 5' ... 993 0.0 1
(BJ424251) Dictyostelium discoideum cDNA clone:ddv51i22, 5' ... 993 0.0 1
(BJ427897) Dictyostelium discoideum cDNA clone:ddv63p23, 5' ... 985 0.0 1
(BJ427892) Dictyostelium discoideum cDNA clone:ddv63o22, 5' ... 985 0.0 1
(BJ427891) Dictyostelium discoideum cDNA clone:ddv63o21, 5' ... 985 0.0 1
(BJ427889) Dictyostelium discoideum cDNA clone:ddv63o19, 5' ... 985 0.0 1
(BJ427888) Dictyostelium discoideum cDNA clone:ddv63n23, 5' ... 985 0.0 1
(BJ427882) Dictyostelium discoideum cDNA clone:ddv63m22, 5' ... 985 0.0 1
(BJ427875) Dictyostelium discoideum cDNA clone:ddv63k24, 5' ... 985 0.0 1
(BJ427874) Dictyostelium discoideum cDNA clone:ddv63k23, 5' ... 985 0.0 1
dna update 2008.11.21
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AM270011_29(AM270011|pid:none) Aspergillus niger contig An02c016... 233 2e-60
AF083031_87(AF083031|pid:none) Guillardia theta nucleomorph chro... 230 1e-59
AF248644_1(AF248644|pid:none) Filobasidiella neoformans var. neo... 229 4e-59
DQ357217_1(DQ357217|pid:none) Leishmania braziliensis elongation... 227 2e-58
AM494972_26(AM494972|pid:none) Leishmania braziliensis chromosom... 227 2e-58
AY026074_1(AY026074|pid:none) Monosiga brevicollis elongation fa... 226 2e-58
(Q6FYA7) RecName: Full=Elongation factor 2; Short=EF-2;... 226 2e-58
AY618550_1(AY618550|pid:none) Trypanosoma cruzi elongation facto... 226 2e-58
CT005272_19(CT005272|pid:none) Leishmania major strain Friedlin,... 226 2e-58
(Q874B9) RecName: Full=Elongation factor 2; Short=EF-2;... 226 2e-58
protein update 2009. 7.15
PSORT

psg: 0.71 gvh: 0.38 alm: 0.34 top: 0.53 tms: 0.00 mit: 0.30 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
32.0 %: nuclear
20.0 %: mitochondrial
4.0 %: vesicles of secretory system

>> prediction for VHK285 is cyt

5' end seq. ID VHK285F
5' end seq.
>VHK285F.Seq
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTGAAGATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA
TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG
GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA
GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG
TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA
AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTANNNNNNNNNN
Length of 5' end seq. 531
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -