VHK279
Library VH
(Link to library)
Clone ID VHK279
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VHK279P
(Link to Original site)
Representative DNA sequence
>VHK279 (VHK279Q) /CSM/VH/VHK2-D/VHK279Q.Seq.d/
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCATTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA
TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG
GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA
GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG
TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA
AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG
AAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAACA
CTGAAGATAXXXXXXXXXXTGATTTANGTTNCCNCANTGCCGGNNAAGNTTTNCCNCAAN
GNGTTTTNGATCANTGGGGTTCAANTGGNGNTGTCAACAAANATAAAAAANCCNCTGAAN
TNGCTTTAGCCCCCAAAAAAAAAAAANGTTTAGCCCCA
sequence update 2002.10.25
Translated Amino Acid sequence
LSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTILSDSLIQRAGIIADKV
SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFS
SEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNTE
EAYLSFRRAIESVNVIVGNTED---

---DLXXXXAGXXXPQXVXDXWGSXGXVNKXKKXXEXALAPKKKKXLAP


Translated Amino Acid sequence (All Frames)
Frame A:
nsrvqkk*stkwlisqsikfvplwtvvkiseicllllmsitvkpfyqil*skelvllpik
flvi*dichvvlmnksvvsplnlhlyhftskcqrktnyqlvvlhtnf*silsipqvtlis
vqk*llpsvllmvl*slsiaskvfaykpklyyvkpslnvsnqsysstksivsy*nsn*tl
kklislsvellnpsmsllvtlki---

---*fxxpxcrxxfxxxxfxsxgfxwxcqqx*kxx*xxfspqkkkxfsp

Frame B:
tleckkskvqng*fhnrsnschygps*kyqkyvcycscrsr*nhfirffnpkswyycr*s
fw*yeiyvmsc**trawyhh*ificitslrnakgrqitswlyftrifnqsyrfprsr*fq
frsnccppcy*wcfsryrlrrrclrtnrncitssrr*tyqtslirqqsrsflirtpikh*
rslslfp*sy*irqchcw*h*r---

---DLXXXXAGXXXPQXVXDXWGSXGXVNKXKKXXEXALAPKKKKXLAP

Frame C:
LSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTILSDSLIQRAGIIADKV
SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFS
SEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNTE
EAYLSFRRAIESVNVIVGNTED---

---ixvxxxpxkxxxxxfxixgvqxxxstxikxplxxl*ppkkkxv*p

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHK279 (VHK279Q) /CSM/VH/VHK2-D/VHK279Q.Seq.d/ 1231 0.0
VHG874 (VHG874Q) /CSM/VH/VHG8-D/VHG874Q.Seq.d/ 1160 0.0
VHQ476 (VHQ476Q) /CSM/VH/VHQ4-D/VHQ476Q.Seq.d/ 1160 0.0
VHQ473 (VHQ473Q) /CSM/VH/VHQ4-D/VHQ473Q.Seq.d/ 1160 0.0
VHQ469 (VHQ469Q) /CSM/VH/VHQ4-C/VHQ469Q.Seq.d/ 1160 0.0
VHQ463 (VHQ463Q) /CSM/VH/VHQ4-C/VHQ463Q.Seq.d/ 1160 0.0
VHQ453 (VHQ453Q) /CSM/VH/VHQ4-C/VHQ453Q.Seq.d/ 1160 0.0
VHQ446 (VHQ446Q) /CSM/VH/VHQ4-B/VHQ446Q.Seq.d/ 1160 0.0
VHQ441 (VHQ441Q) /CSM/VH/VHQ4-B/VHQ441Q.Seq.d/ 1160 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ424271) Dictyostelium discoideum cDNA clone:ddv51m20, 5' ... 1168 0.0 1
(BJ427892) Dictyostelium discoideum cDNA clone:ddv63o22, 5' ... 1160 0.0 1
(BJ427891) Dictyostelium discoideum cDNA clone:ddv63o21, 5' ... 1160 0.0 1
(BJ427888) Dictyostelium discoideum cDNA clone:ddv63n23, 5' ... 1160 0.0 1
(BJ427874) Dictyostelium discoideum cDNA clone:ddv63k23, 5' ... 1160 0.0 1
(BJ427873) Dictyostelium discoideum cDNA clone:ddv63k22, 5' ... 1160 0.0 1
(BJ427872) Dictyostelium discoideum cDNA clone:ddv63k21, 5' ... 1160 0.0 1
(BJ427858) Dictyostelium discoideum cDNA clone:ddv63h20, 5' ... 1160 0.0 1
(BJ427832) Dictyostelium discoideum cDNA clone:ddv63b20, 5' ... 1160 0.0 1
(BJ427817) Dictyostelium discoideum cDNA clone:ddv63o16, 5' ... 1160 0.0 1
dna update 2008.11.21
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AM270011_29(AM270011|pid:none) Aspergillus niger contig An02c016... 263 6e-69
AF248644_1(AF248644|pid:none) Filobasidiella neoformans var. neo... 258 1e-67
(Q6FYA7) RecName: Full=Elongation factor 2; Short=EF-2;... 257 3e-67
AF083031_87(AF083031|pid:none) Guillardia theta nucleomorph chro... 256 4e-67
(Q874B9) RecName: Full=Elongation factor 2; Short=EF-2;... 255 9e-67
AY026074_1(AY026074|pid:none) Monosiga brevicollis elongation fa... 254 2e-66
BC089730_1(BC089730|pid:none) Xenopus tropicalis MGC108369 prote... 253 3e-66
DQ357217_1(DQ357217|pid:none) Leishmania braziliensis elongation... 253 3e-66
AM494972_26(AM494972|pid:none) Leishmania braziliensis chromosom... 253 3e-66
CT005272_19(CT005272|pid:none) Leishmania major strain Friedlin,... 253 5e-66
protein update 2009. 7.15
PSORT

psg: 0.71 gvh: 0.38 alm: 0.34 top: 0.53 tms: 0.00 mit: 0.30 mip: 0.00
nuc: 0.13 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: cytoplasmic
28.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: plasma membrane

>> prediction for VHK279 is cyt

5' end seq. ID VHK279F
5' end seq.
>VHK279F.Seq
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCATTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA
TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG
GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA
GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG
TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA
AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG
AAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAACA
CTGAAGATANNNNNNNNNN
Length of 5' end seq. 619
3' end seq. ID VHK279Z
3' end seq.
>VHK279Z.Seq
NNNNNNNNNNTGATTTANGTTNCCNCANTGCCGGNNAAGNTTTNCCNCAANGNGTTTTNG
ATCANTGGGGTTCAANTGGNGNTGTCAACAAANATAAAAAANCCNCTGAANTNGCTTTAG
CCCCCAAAAAAAAAAAANGTTTAGCCCCA
Length of 3' end seq. 149
Connected seq. ID VHK279P
Connected seq.
>VHK279P.Seq
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCATTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA
TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG
GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA
GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG
TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA
AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG
AAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAACA
CTGAAGATA----------TGATTTANGTTNCCNCANTGCCGGNNAAGNTTTNCCNCAAN
GNGTTTTNGATCANTGGGGTTCAANTGGNGNTGTCAACAAANATAAAAAANCCNCTGAAN
TNGCTTTAGCCCCCAAAAAAAAAAAANGTTTAGCCCCA
Length of connected seq. 748
Full length Seq ID -
Full length Seq. -
Length of full length seq. -