VHK268
Library VH
(Link to library)
Clone ID VHK268
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16415-1
Original site URL
Representative seq. ID VHK268P
(Link to Original site)
Representative DNA sequence
>VHK268 (VHK268Q) /CSM/VH/VHK2-C/VHK268Q.Seq.d/
TTTAGAACGTAAAAAAGCTCCAAATAGATTATTTGTAGAAGAAGCAATTAATGATGATAA
TTCAGTAGTTACATTAAATCCAGAGACAATGGATCAATTACAATTCTTTAGAGGTGACAC
ACTTTTAATTAAAGGTAAAAAGAGAAGAGATACCGTTTGTATTGTATTGTCAGATCCAAC
CATCGATCCATCAAAGATCCGTATGAATAAAGTTGTAAGAAATAATCTTCGTGTTAGATT
AGGTGACATGATTTCAGTTCACCAATGTTCAGATGTTAAATATGGCAAACGTATTCATGT
GTTACCAATTGATGATACCATAGAAGGTCTCAGTGGCAATCTCTTTGATCTTTACCTCAA
ACCATACTTTTTAGAAGCCTACCGTCCAGTCCGTAAGGGTGACTTATTTTTAGTACGTGG
TGGTATGAGAGCCGTAGAATTTAAAGTTGTCGAAACCGACCCAGGTGAATATTGTATCGT
TGCACCAGAGACATTTATACATTGTGAAGGTGAGGCAGTCAAGAGAGAGGATGAAGACCG
TCTCGATGAGGTXXXXXXXXXXTTTGATGAGTTGGATAGTATTGCACGTTTTANAGGTTC
ATCACAAGGTGATGCTGGTGGTGCTGGTGATAAAGTTATCAATCAAATTTTAACTGAAAT
GGATGGTATGAACGCCAANAANAACGTTTTCATCATTGGNGNTACCAATAGACCAGATAT
CATCGATCCAGNTATCCTCCGTCCAGGTNGTTTAGATCAACTCATTTACATTCCATTACC
AGATTTACCATNTNGNGTTGCCATTTTCAAGGNTTGTNTCAATAAATCNCCAGTCGCCAA
GGATATAGATTTANAATTTTTGGGTCAAAANACTCAAGGTTTNTTTGGNGCAGATTTAAC
TGAAATTTGTCAACGNGCCTGTAAATTAGCTATTNGTGAATCCATTGAAAAGGATATTGA
ATCCNCCAAAGCCCGTCAANAATTTGGTGATACCAANATGGAAGATGACTCTGTCGATCC
AGTACCAGAAATTACTNGTGATCNCTTCCAANAAGCCATGAGATNTGCTNGTCGTTCTGN
ATCCGATAATGATATTAGAAAATATGAAAGCTTTGCTCAAACTTTAGTTCAATCAANAGG
TNTTGGTAATAATTTCAAATTCCCAGATCAAGAATNTTCAGGTCAATTCAATCAAG
sequence update 2002.10.25
Translated Amino Acid sequence
LERKKAPNRLFVEEAINDDNSVVTLNPETMDQLQFFRGDTLLIKGKKRRDTVCIVLSDPT
IDPSKIRMNKVVRNNLRVRLGDMISVHQCSDVKYGKRIHVLPIDDTIEGLSGNLFDLYLK
PYFLEAYRPVRKGDLFLVRGGMRAVEFKVVETDPGEYCIVAPETFIHCEGEAVKREDEDR
LDE---

---FDELDSIARFXGSSQGDAGGAGDKVINQILTEMDGMNAXXNVFIIGXTNRPDIIDPX
ILRPGXLDQLIYIPLPDLPXXVAIFKXCXNKSPVAKDIDLXFLGQXTQGXFGADLTEICQ
RACKLAIXESIEKDIESXKARQXFGDTXMEDDSVDPVPEITXDXFQXAMRXAXRSXSDND
IRKYESFAQTLVQSXGXGNNFKFPDQEXSGQFNQ


Translated Amino Acid sequence (All Frames)
Frame A:
frt*kssk*iicrrsn****fssyiksrdngsitil*r*htfn*r*kekryrlycivrsn
hrsikdpye*sckk*ssc*ir*hdfsspmfrc*iwqtyscvtn**yhrrsqwqsl*slpq
tilfrslpssp*g*lifstwwyesrri*scrnrpr*ilyrctrdiytl*r*gsqerg*rp
sr*g---

---FDELDSIARFXGSSQGDAGGAGDKVINQILTEMDGMNAXXNVFIIGXTNRPDIIDPX
ILRPGXLDQLIYIPLPDLPXXVAIFKXCXNKSPVAKDIDLXFLGQXTQGXFGADLTEICQ
RACKLAIXESIEKDIESXKARQXFGDTXMEDDSVDPVPEITXDXFQXAMRXAXRSXSDND
IRKYESFAQTLVQSXGXGNNFKFPDQEXSGQFNQ

Frame B:
LERKKAPNRLFVEEAINDDNSVVTLNPETMDQLQFFRGDTLLIKGKKRRDTVCIVLSDPT
IDPSKIRMNKVVRNNLRVRLGDMISVHQCSDVKYGKRIHVLPIDDTIEGLSGNLFDLYLK
PYFLEAYRPVRKGDLFLVRGGMRAVEFKVVETDPGEYCIVAPETFIHCEGEAVKREDEDR
LDE---

---lmswivlhvlxvhhkvmlvvlviklsikf*lkwmv*tpxxtfsslxxpidqissiqx
ssvqvv*insftfhyqiyhxxlpfsrxvsinxqspri*ixnfwvkxlkvxlxqi*lkfvn
xpvn*lxvnplkrilnppkpvxnlvipxwkmtlsiqyqkllvixsxkp*dxlvvlxpimi
lenmkallkl*fnqxvlviisnsqiknxqvnsik

Frame C:
*nvkklqidyl*kkqlmmiiq*lh*iqrqwinynslevthf*lkvkreeipfvlycqiqp
sihqrsv*ikl*eiifvld*vt*fqftnvqmlnmanvfmcyqlmip*kvsvaisliftsn
htf*kptvqsvrvtyf*yvvv*ep*nlklskptqvnivslhqrhlyivkvrqsrermktv
smr---

---**vg*yctfxrfitr*cwwcw**syqsnfn*ngwyerqxxrfhhwxyq*tryhrsxy
ppsrxfrsthlhsitrftxxxchfqglxq*ixsrqgyrfxifgskxsrfxwxrfn*nlst
xl*isyx*ih*kgy*ixqspsxiw*yqxgr*lcrsstrnyx*slpxshexcxsfxir**y
*ki*klcsnfssixrxw**fqiprsrxfrsiqs

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHK268 (VHK268Q) /CSM/VH/VHK2-C/VHK268Q.Seq.d/ 2127 0.0
VHM874 (VHM874Q) /CSM/VH/VHM8-D/VHM874Q.Seq.d/ 1094 0.0
VHL714 (VHL714Q) /CSM/VH/VHL7-A/VHL714Q.Seq.d/ 1094 0.0
VHJ543 (VHJ543Q) /CSM/VH/VHJ5-B/VHJ543Q.Seq.d/ 1094 0.0
VHH667 (VHH667Q) /CSM/VH/VHH6-C/VHH667Q.Seq.d/ 1094 0.0
VHC264 (VHC264Q) /CSM/VH/VHC2-C/VHC264Q.Seq.d/ 1094 0.0
VHB764 (VHB764Q) /CSM/VH/VHB7-C/VHB764Q.Seq.d/ 1094 0.0
SFF423 (SFF423Q) /CSM/SF/SFF4-A/SFF423Q.Seq.d/ 1094 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(U83085) Dictyostelium discoideum cell division cycle protei... 1094 0.0 1
(BJ425630) Dictyostelium discoideum cDNA clone:ddv56h12, 5' ... 1094 0.0 1
(BJ424954) Dictyostelium discoideum cDNA clone:ddv54l03, 5' ... 1094 0.0 1
(BJ424162) Dictyostelium discoideum cDNA clone:ddv51g18, 5' ... 1094 0.0 1
(BJ423755) Dictyostelium discoideum cDNA clone:ddv50e11, 5' ... 1094 0.0 1
(BJ422627) Dictyostelium discoideum cDNA clone:ddv46e18, 5' ... 1094 0.0 1
(BJ419309) Dictyostelium discoideum cDNA clone:ddv35o16, 5' ... 1094 0.0 1
(BJ418999) Dictyostelium discoideum cDNA clone:ddv34p15, 5' ... 1094 0.0 1
(BJ386890) Dictyostelium discoideum cDNA clone:dds11n06, 5' ... 1094 0.0 1
(BJ367508) Dictyostelium discoideum cDNA clone:ddc42p24, 5' ... 1094 0.0 1
dna update 2008.11.21
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

U83085_1(U83085|pid:none) Dictyostelium discoideum cell division... 353 7e-96
DQ515925_1(DQ515925|pid:none) Nicotiana tabacum putative spindle... 297 6e-79
AL162751_7(AL162751|pid:none) Arabidopsis thaliana DNA chromosom... 295 2e-78
FB781796_1(FB781796|pid:none) Sequence 1069 from Patent WO200803... 293 6e-78
EU606206_1(EU606206|pid:none) Dimocarpus longan cell division cy... 293 8e-78
GM966461_1(GM966461|pid:none) Sequence 1793 from Patent WO200814... 292 2e-77
FB781494_1(FB781494|pid:none) Sequence 767 from Patent WO2008034... 292 2e-77
EU961444_1(EU961444|pid:none) Zea mays clone 235510 unknown mRNA. 291 2e-77
FB905989_1(FB905989|pid:none) Sequence 125262 from Patent WO2008... 291 3e-77
FB781564_1(FB781564|pid:none) Sequence 837 from Patent WO2008034... 291 3e-77
protein update 2009. 7.15
PSORT

psg: 0.68 gvh: 0.33 alm: 0.42 top: 0.53 tms: 0.00 mit: 0.28 mip: 0.00
nuc: 0.04 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
24.0 %: nuclear
12.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: extracellular, including cell wall

>> prediction for VHK268 is cyt

5' end seq. ID VHK268F
5' end seq.
>VHK268F.Seq
TTTAGAACGTAAAAAAGCTCCAAATAGATTATTTGTAGAAGAAGCAATTAATGATGATAA
TTCAGTAGTTACATTAAATCCAGAGACAATGGATCAATTACAATTCTTTAGAGGTGACAC
ACTTTTAATTAAAGGTAAAAAGAGAAGAGATACCGTTTGTATTGTATTGTCAGATCCAAC
CATCGATCCATCAAAGATCCGTATGAATAAAGTTGTAAGAAATAATCTTCGTGTTAGATT
AGGTGACATGATTTCAGTTCACCAATGTTCAGATGTTAAATATGGCAAACGTATTCATGT
GTTACCAATTGATGATACCATAGAAGGTCTCAGTGGCAATCTCTTTGATCTTTACCTCAA
ACCATACTTTTTAGAAGCCTACCGTCCAGTCCGTAAGGGTGACTTATTTTTAGTACGTGG
TGGTATGAGAGCCGTAGAATTTAAAGTTGTCGAAACCGACCCAGGTGAATATTGTATCGT
TGCACCAGAGACATTTATACATTGTGAAGGTGAGGCAGTCAAGAGAGAGGATGAAGACCG
TCTCGATGAGGTNNNNNNNNNN
Length of 5' end seq. 562
3' end seq. ID VHK268Z
3' end seq.
>VHK268Z.Seq
NNNNNNNNNNTTTGATGAGTTGGATAGTATTGCACGTTTTANAGGTTCATCACAAGGTGA
TGCTGGTGGTGCTGGTGATAAAGTTATCAATCAAATTTTAACTGAAATGGATGGTATGAA
CGCCAANAANAACGTTTTCATCATTGGNGNTACCAATAGACCAGATATCATCGATCCAGN
TATCCTCCGTCCAGGTNGTTTAGATCAACTCATTTACATTCCATTACCAGATTTACCATN
TNGNGTTGCCATTTTCAAGGNTTGTNTCAATAAATCNCCAGTCGCCAAGGATATAGATTT
ANAATTTTTGGGTCAAAANACTCAAGGTTTNTTTGGNGCAGATTTAACTGAAATTTGTCA
ACGNGCCTGTAAATTAGCTATTNGTGAATCCATTGAAAAGGATATTGAATCCNCCAAAGC
CCGTCAANAATTTGGTGATACCAANATGGAAGATGACTCTGTCGATCCAGTACCAGAAAT
TACTNGTGATCNCTTCCAANAAGCCATGAGATNTGCTNGTCGTTCTGNATCCGATAATGA
TATTAGAAAATATGAAAGCTTTGCTCAAACTTTAGTTCAATCAANAGGTNTTGGTAATAA
TTTCAAATTCCCAGATCAAGAATNTTCAGGTCAATTCAATCAAG
Length of 3' end seq. 644
Connected seq. ID VHK268P
Connected seq.
>VHK268P.Seq
TTTAGAACGTAAAAAAGCTCCAAATAGATTATTTGTAGAAGAAGCAATTAATGATGATAA
TTCAGTAGTTACATTAAATCCAGAGACAATGGATCAATTACAATTCTTTAGAGGTGACAC
ACTTTTAATTAAAGGTAAAAAGAGAAGAGATACCGTTTGTATTGTATTGTCAGATCCAAC
CATCGATCCATCAAAGATCCGTATGAATAAAGTTGTAAGAAATAATCTTCGTGTTAGATT
AGGTGACATGATTTCAGTTCACCAATGTTCAGATGTTAAATATGGCAAACGTATTCATGT
GTTACCAATTGATGATACCATAGAAGGTCTCAGTGGCAATCTCTTTGATCTTTACCTCAA
ACCATACTTTTTAGAAGCCTACCGTCCAGTCCGTAAGGGTGACTTATTTTTAGTACGTGG
TGGTATGAGAGCCGTAGAATTTAAAGTTGTCGAAACCGACCCAGGTGAATATTGTATCGT
TGCACCAGAGACATTTATACATTGTGAAGGTGAGGCAGTCAAGAGAGAGGATGAAGACCG
TCTCGATGAGGT----------TTTGATGAGTTGGATAGTATTGCACGTTTTANAGGTTC
ATCACAAGGTGATGCTGGTGGTGCTGGTGATAAAGTTATCAATCAAATTTTAACTGAAAT
GGATGGTATGAACGCCAANAANAACGTTTTCATCATTGGNGNTACCAATAGACCAGATAT
CATCGATCCAGNTATCCTCCGTCCAGGTNGTTTAGATCAACTCATTTACATTCCATTACC
AGATTTACCATNTNGNGTTGCCATTTTCAAGGNTTGTNTCAATAAATCNCCAGTCGCCAA
GGATATAGATTTANAATTTTTGGGTCAAAANACTCAAGGTTTNTTTGGNGCAGATTTAAC
TGAAATTTGTCAACGNGCCTGTAAATTAGCTATTNGTGAATCCATTGAAAAGGATATTGA
ATCCNCCAAAGCCCGTCAANAATTTGGTGATACCAANATGGAAGATGACTCTGTCGATCC
AGTACCAGAAATTACTNGTGATCNCTTCCAANAAGCCATGAGATNTGCTNGTCGTTCTGN
ATCCGATAATGATATTAGAAAATATGAAAGCTTTGCTCAAACTTTAGTTCAATCAANAGG
TNTTGGTAATAATTTCAAATTCCCAGATCAAGAATNTTCAGGTCAATTCAATCAAG
Length of connected seq. 1186
Full length Seq ID -
Full length Seq. -
Length of full length seq. -