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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHK263
Library VH
(Link to library)
Clone ID VHK263
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16583-1
Original site URL
Representative seq. ID VHK263P
(Link to Original site)
Representative DNA sequence 
>VHK263 (VHK263Q) /CSM/VH/VHK2-C/VHK263Q.Seq.d/
GGAAAGACTAATCGAACAACCTAGTAGCTGGTTCCTTCCGAAGTTTCCCTCAGGATAGCT
GGAGCAGTATTCTAGTTCCATCTTGTAAAGACAATGATTAGCAGTTTCGGGGGCGTAATG
CTCTCAGCTGATTCTCAAACTCTGAACGGGTGGGTATCATTTTAATTCACTTAATTGGAT
TTTAAAATTAAATTGCACATGTGCAATGAAAAATAGGAGCTCTTAGTGGGCCATTTTTGG
TAAGCAGAACTGGCGATGTGGGTTGAACCAAATATTGGGATAAGACGTCTAACATTCACT
AATAGATACCACAAAAGGTGTTAGTTCATTAAGACAGCAGGACGGTGGCCATGGAAGTCG
GTATCCGCTAAGGAGTGTGTAACAACTCACCTGCCAAATGGACTAGCCCTGAAAATGGAT
GACGCTAGCAGTGGATGGTCGATGCCCAATCGTTAAAAGAAGTGATAATACTTTTAACGT
GTAGGAAGGCGTGAAGGTAACGTAGAAGCTTGAATGTGAATTCGAGTGGAGTTGTCTTTA
GTGCAGATCTTGATGGTAGTAGCAAATATTCAAAAGAATTTACTTTGAAGGCXXXXXXXX
XXTCAGTGAGAACAGAAATCTCACGTAGAGTAAAAGGGCAAAAGCCTGCTTGATTCTGAT
TTTCAGTACTAATCGGAACTGGGAAACCAGGGCCTATCGATCCTTTATGTGCTTAAATCT
TAAGCCTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGC
TCATAGCGACGCTGCTTTTTGATCCTTCGATGTCGGCTCTTCTTATCATTGTGAAGCAGA
ATTCACAAAGTGTTGGATTGTTCACCCACTAACAAGGAACGTGAGCTGGGTTCAGACCGT
CGTGAGACAGGTTAGTTTTACCCTACTGTTGTCAATTGTTTGCGTAATAGTAGCATGATT
TAGTACGAGAGGAACTGTCATGCCGGATCACTGGTCTGTAGGTTTATTTGACAAAATAGT
GACCTGCCGCTACCATCCGTTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATTCTA
GAAACGCAAACCAAATGCTTTAGAGTGTGAATGTTGTAGGTAACATTAGGTTGTTGGTGG
GGGACCACTTTCAACTTTAAACCATATGATTAATCGCTGTTACACTGCAGTTTCCTTCCG
GTTATTGTGGTGGGTGGCTAAATTCTAATTTATATCCTCGTTCCGCTCAACTCTTCGATT
GTAGACGACTATCAAATGAACTAGGTGCTGTAAGCTTCCGAGTAGCGTTCAGTTACGAGG
GGTTGAGGCTTTTCCATTAGTTCTTATATTATTTTCAACAACACCTATCCATACCAATTA
ATTCATACACA
sequence update 2002.10.25
Translated Amino Acid sequence 
kd*snnlvagsfrsfpqdswssilvpsckdnd*qfrgrnals*fsnservgiilihligf
*n*iahvq*kigalsgpflvsrtgdvg*tkywdktsnih**ipqkvlvh*dsrtvamevg
ir*gvcnnspakwtspeng*r*qwmvdaqslkeviilltcrka*r*RRSLNVNSSGVVFS
ADLDGSSKYSKEFTLK---

---SVRTEISRRVKGQKPA*f*fsvligtgkpgpidplca*ilslevseklpqg*lacgs
qaliatllfdpsmsalliivkqnsqsvglfth*qgt*agfrps*drlvlpyccqlfa***
hdlvreelscritgl*vyltk**paatirwimaerl*vrihsrnanqml*svnvvgnirl
lvgdhfql*ti*liavtlqfpsgycggwlnsnlyprsaqlfdcrrlsnelgavsfrvafs
yeglrlfh*flyyfqqhlsipinsyt
Translated Amino Acid sequence (All Frames) 
Frame A:
gktnrtt**lvpsevslriagavf*fhlvktmissfggvmlsadsqtlngwvsf*ft*ld
fkiklhmcnek*ellvghfw*aelamwvepnigirrltftnryhkrc*fiktagrwpwks
vsakecvtthlpnglalkmddassgwsmpnr*kk**yf*rvgrregnvea*m*irvelsl
vqilmvvaniqknll*r---

---SVRTEISRRVKGQKPA*f*fsvligtgkpgpidplca*ilslevseklpqg*lacgs
qaliatllfdpsmsalliivkqnsqsvglfth*qgt*agfrps*drlvlpyccqlfa***
hdlvreelscritgl*vyltk**paatirwimaerl*vrihsrnanqml*svnvvgnirl
lvgdhfql*ti*liavtlqfpsgycggwlnsnlyprsaqlfdcrrlsnelgavsfrvafs
yeglrlfh*flyyfqqhlsipinsyt

Frame B:
erlieqpsswflpkfpsg*leqysssil*rq*lavsga*csqlilkl*tggyhfnslnwi
lklnctcamknrss*waifgkqnwrcglnqilg*dv*hslidttkgvsslrqqdgghgsr
yplrsv*qltcqmd*p*kwmtlavdgrcpivkrsdntfnv*egvkvt*klecefewscl*
crs*w**qifkriyfeg---

---q*eqkshve*kgkslldsdfqy*selgnqglsilyvlks*a*rcqksyhrdnwlvaa
krs*rrcflilrcrlflsl*srihkvldcsptnkerelgsdrretg*fyptvvnclrnss
mi*yernchagslvcrfi*qnsdlplpsvg*wlnasksesiletqtkcfrv*ml*vtlgc
wwgttfnfkpyd*sllhcsflpvivvgg*iliyilvplnssivddyqmn*vl*ase*rsv
trg*gfsissyiifnntypyqliht

Frame C:
kd*snnlvagsfrsfpqdswssilvpsckdnd*qfrgrnals*fsnservgiilihligf
*n*iahvq*kigalsgpflvsrtgdvg*tkywdktsnih**ipqkvlvh*dsrtvamevg
ir*gvcnnspakwtspeng*r*qwmvdaqslkeviilltcrka*r*RRSLNVNSSGVVFS
ADLDGSSKYSKEFTLK---

---senrnlt*skrakaclilifstnrnwetrayrsfmclnlkprgvrkvttgitglwqp
sahsdaaf*sfdvgssyhceaeftkcwivhpltrnvswvqtvvrqvsftlllsivcviva
*fstrgtvmpdhwsvglfdkivtcryhpldng*tplsqnpf*krkpnalececcr*h*vv
gggplstlnhminrcytavsfrllwwvakf*fissfrstlrl*ttik*trccklpssvql
rgveafplvlilfsttpihtn*fih
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHK263 (VHK263Q) /CSM/VH/VHK2-C/VHK263Q.Seq.d/                       2698   0.0
SLE369 (SLE369Q) /CSM/SL/SLE3-C/SLE369Q.Seq.d/                       1465   0.0
VHD592 (VHD592Q) /CSM/VH/VHD5-D/VHD592Q.Seq.d/                       1455   0.0
SHA880 (SHA880Q) /CSM/SH/SHA8-D/SHA880Q.Seq.d/                       1455   0.0
CHI557 (CHI557Q) /CSM/CH/CHI5-C/CHI557Q.Seq.d/                       1455   0.0
VHQ477 (VHQ477Q) /CSM/VH/VHQ4-D/VHQ477Q.Seq.d/                       1449   0.0
VHI207 (VHI207Q) /CSM/VH/VHI2-A/VHI207Q.Seq.d/                       1449   0.0
CHL604 (CHL604Q) /CSM/CH/CHL6-A/CHL604Q.Seq.d/                       1447   0.0
VHK724 (VHK724Q) /CSM/VH/VHK7-A/VHK724Q.Seq.d/                       1441   0.0
VHK190 (VHK190Q) /CSM/VH/VHK1-D/VHK190Q.Seq.d/                       1441   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ443023) Dictyostelium discoideum cDNA clone:ddv51m16, 3' ...  1564   0.0    1
(AY171066) Dictyostelium discoideum extrachromosomal palindr...  1465   0.0    1
(DQ340385) Dictyostelium citrinum 17S ribosomal RNA, 5.8S ri...  1449   0.0    1
(BJ446798) Dictyostelium discoideum cDNA clone:ddv63j20, 3' ...  1449   0.0    1
(BJ441582) Dictyostelium discoideum cDNA clone:ddv47m02, 3' ...  1449   0.0    1
(BJ382539) Dictyostelium discoideum cDNA clone:ddc45g02, 3' ...  1447   0.0    1
(BJ446830) Dictyostelium discoideum cDNA clone:ddv63p24, 3' ...  1443   0.0    1
(BJ443056) Dictyostelium discoideum cDNA clone:ddv51c23, 3' ...  1441   0.0    1
(BJ436379) Dictyostelium discoideum cDNA clone:ddv31b01, 3' ...  1439   0.0    1
(BJ438901) Dictyostelium discoideum cDNA clone:ddv38g23, 3' ...  1437   0.0    2
dna update 2008.11.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU430725_1(EU430725|pid:none) Cupressus sempervirens clone CYPLP...   140   1e-31
AY436773_1(AY436773|pid:none) Pyrus communis putative senescence...   110   1e-22
CP001575_406(CP001575|pid:none) Micromonas sp. RCC299 chromosome...   108   4e-22
AK230153_1(AK230153|pid:none) Arabidopsis thaliana mRNA for hypo...   105   4e-21
EF192058_1(EF192058|pid:none) Trichosanthes dioica clone TDM04 p...    84   9e-15
CP000497_644(CP000497|pid:none) Pichia stipitis CBS 6054 chromos...    60   1e-13
EU244380_1(EU244380|pid:none) Haliotis diversicolor clone HDr4CJ...    73   2e-11
AL844507_287(AL844507|pid:none) Plasmodium falciparum 3D7 chromo...    72   4e-11
BC114377_1(BC114377|pid:none) Homo sapiens cDNA clone MGC:134704...    68   9e-10
U12823_1(U12823|pid:none) Acanthamoeba polyphaga CDC:0187:1 hemo...    45   0.001
protein update 2009. 7.15
PSORT 

 psg: 0.89  gvh: 0.42  alm: 0.54  top: 0.33  tms: 0.00  mit: 0.44  mip: 0.02
 nuc: 0.12  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 24.0 %: cytoplasmic
	 24.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: extracellular, including cell wall

>> prediction for VHK263 is nuc
5' end seq. ID VHK263F
5' end seq. 
>VHK263F.Seq
GGAAAGACTAATCGAACAACCTAGTAGCTGGTTCCTTCCGAAGTTTCCCTCAGGATAGCT
GGAGCAGTATTCTAGTTCCATCTTGTAAAGACAATGATTAGCAGTTTCGGGGGCGTAATG
CTCTCAGCTGATTCTCAAACTCTGAACGGGTGGGTATCATTTTAATTCACTTAATTGGAT
TTTAAAATTAAATTGCACATGTGCAATGAAAAATAGGAGCTCTTAGTGGGCCATTTTTGG
TAAGCAGAACTGGCGATGTGGGTTGAACCAAATATTGGGATAAGACGTCTAACATTCACT
AATAGATACCACAAAAGGTGTTAGTTCATTAAGACAGCAGGACGGTGGCCATGGAAGTCG
GTATCCGCTAAGGAGTGTGTAACAACTCACCTGCCAAATGGACTAGCCCTGAAAATGGAT
GACGCTAGCAGTGGATGGTCGATGCCCAATCGTTAAAAGAAGTGATAATACTTTTAACGT
GTAGGAAGGCGTGAAGGTAACGTAGAAGCTTGAATGTGAATTCGAGTGGAGTTGTCTTTA
GTGCAGATCTTGATGGTAGTAGCAAATATTCAAAAGAATTTACTTTGAAGGCNNNNNNNN
NN
Length of 5' end seq. 602
3' end seq. ID VHK263Z
3' end seq. 
>VHK263Z.Seq
NNNNNNNNNNTCAGTGAGAACAGAAATCTCACGTAGAGTAAAAGGGCAAAAGCCTGCTTG
ATTCTGATTTTCAGTACTAATCGGAACTGGGAAACCAGGGCCTATCGATCCTTTATGTGC
TTAAATCTTAAGCCTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAG
CCAAGCGCTCATAGCGACGCTGCTTTTTGATCCTTCGATGTCGGCTCTTCTTATCATTGT
GAAGCAGAATTCACAAAGTGTTGGATTGTTCACCCACTAACAAGGAACGTGAGCTGGGTT
CAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTGTTGTCAATTGTTTGCGTAATAGTA
GCATGATTTAGTACGAGAGGAACTGTCATGCCGGATCACTGGTCTGTAGGTTTATTTGAC
AAAATAGTGACCTGCCGCTACCATCCGTTGGATAATGGCTGAACGCCTCTAAGTCAGAAT
CCATTCTAGAAACGCAAACCAAATGCTTTAGAGTGTGAATGTTGTAGGTAACATTAGGTT
GTTGGTGGGGGACCACTTTCAACTTTAAACCATATGATTAATCGCTGTTACACTGCAGTT
TCCTTCCGGTTATTGTGGTGGGTGGCTAAATTCTAATTTATATCCTCGTTCCGCTCAACT
CTTCGATTGTAGACGACTATCAAATGAACTAGGTGCTGTAAGCTTCCGAGTAGCGTTCAG
TTACGAGGGGTTGAGGCTTTTCCATTAGTTCTTATATTATTTTCAACAACACCTATCCAT
ACCAATTAATTCATACACA
Length of 3' end seq. 799
Connected seq. ID VHK263P
Connected seq. 
>VHK263P.Seq
GGAAAGACTAATCGAACAACCTAGTAGCTGGTTCCTTCCGAAGTTTCCCTCAGGATAGCT
GGAGCAGTATTCTAGTTCCATCTTGTAAAGACAATGATTAGCAGTTTCGGGGGCGTAATG
CTCTCAGCTGATTCTCAAACTCTGAACGGGTGGGTATCATTTTAATTCACTTAATTGGAT
TTTAAAATTAAATTGCACATGTGCAATGAAAAATAGGAGCTCTTAGTGGGCCATTTTTGG
TAAGCAGAACTGGCGATGTGGGTTGAACCAAATATTGGGATAAGACGTCTAACATTCACT
AATAGATACCACAAAAGGTGTTAGTTCATTAAGACAGCAGGACGGTGGCCATGGAAGTCG
GTATCCGCTAAGGAGTGTGTAACAACTCACCTGCCAAATGGACTAGCCCTGAAAATGGAT
GACGCTAGCAGTGGATGGTCGATGCCCAATCGTTAAAAGAAGTGATAATACTTTTAACGT
GTAGGAAGGCGTGAAGGTAACGTAGAAGCTTGAATGTGAATTCGAGTGGAGTTGTCTTTA
GTGCAGATCTTGATGGTAGTAGCAAATATTCAAAAGAATTTACTTTGAAGGC--------
--TCAGTGAGAACAGAAATCTCACGTAGAGTAAAAGGGCAAAAGCCTGCTTGATTCTGAT
TTTCAGTACTAATCGGAACTGGGAAACCAGGGCCTATCGATCCTTTATGTGCTTAAATCT
TAAGCCTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGC
TCATAGCGACGCTGCTTTTTGATCCTTCGATGTCGGCTCTTCTTATCATTGTGAAGCAGA
ATTCACAAAGTGTTGGATTGTTCACCCACTAACAAGGAACGTGAGCTGGGTTCAGACCGT
CGTGAGACAGGTTAGTTTTACCCTACTGTTGTCAATTGTTTGCGTAATAGTAGCATGATT
TAGTACGAGAGGAACTGTCATGCCGGATCACTGGTCTGTAGGTTTATTTGACAAAATAGT
GACCTGCCGCTACCATCCGTTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATTCTA
GAAACGCAAACCAAATGCTTTAGAGTGTGAATGTTGTAGGTAACATTAGGTTGTTGGTGG
GGGACCACTTTCAACTTTAAACCATATGATTAATCGCTGTTACACTGCAGTTTCCTTCCG
GTTATTGTGGTGGGTGGCTAAATTCTAATTTATATCCTCGTTCCGCTCAACTCTTCGATT
GTAGACGACTATCAAATGAACTAGGTGCTGTAAGCTTCCGAGTAGCGTTCAGTTACGAGG
GGTTGAGGCTTTTCCATTAGTTCTTATATTATTTTCAACAACACCTATCCATACCAATTA
ATTCATACACA
Length of connected seq. 1381
Full length Seq ID -
Full length Seq. -
Length of full length seq. -