AFO381
Library AF
(Link to library)
Clone ID AFO381
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16294-1
Original site URL
Representative seq. ID AFO381P
(Link to Original site)
Representative DNA sequence
>AFO381 (AFO381Q) /CSM/AF/AFO3-D/AFO381Q.Seq.d/
CTGTTGGCCTACTGGTGAAAATATTTTACCAACACTTTCAAAATATATTGAAATTCCAAA
TCAATCACCATTATATGATGCAGAATGGGCAACCAATGGTTATACAGAAGAAGCAATTCA
ATTATTAGAGAAATGGATCTTAGCACAAGGTATCAAAGGTATTTCATGTGAAATTAAAAG
AATTGAAGGATTAACACCAATTATTTTCATGGTAGTCGAAGCAACCAAAACTGAAAAAGT
TAAAACTGTACTTTTATATGGTCACATGGATAAACAACCACCACTCACTGATGCATGGGA
TGAAGGATTACATCCATACAAAGCXXXXXXXXXXTAAAAGATTACACGTTGAAATTCCAC
AACATCGTTTAGATCAAATCGCAAAATGTGCTGAAATTTTAGGCGAAACCATCTATGATG
AATTCTCATGGTACAAAAATACCACTCCAGTCACTAAAGATTTAACCCAATTGATGATCA
ACAAAACTTGGTATCCAACTATTTGCATCACCGGTGCTGAAGGTATTCCACACACTTCAA
ATGCTGGTAATGTCATGAGAACTCACACCACCGTTAAAGTTAGTGTTCGTTTACCACCAT
CATTCAAAGCAGCTGATGCATCAACTGTATTAAAAGAAATTTTCGAAACTAATCCACCAT
ATGGTGCTGAAGTTACCTTCAAAATGGATAAATGTGCTTCAGGTTGGGATTCACCACAAA
CTAGACCAGAATTAGAAAAAGCATTAGGAGAAGCTTCAAATCTTTTCTTTGGCAAAGACC
ACGTATACATGGGTGAAGGTGGTTCCATCCCATTCATGAAAATGTTACATGACCGTTTCA
ATTGTCAATTTATCGTTACTGGTTTATTAGGTCCAGGTTCAAATGCTCATGGTCCAAATG
AATTCTTAGATATTCCATTTGCCAAGAAATTATTAAGTTGTGTTATTTATTTATTAGATG
CTCATTCCAAGTTNATTAAATAAATAAACCTTATTTCATT
sequence update 2001. 6. 1
Translated Amino Acid sequence
CWPTGENILPTLSKYIEIPNQSPLYDAEWATNGYTEEAIQLLEKWILAQGIKGISCEIKR
IEGLTPIIFMVVEATKTEKVKTVLLYGHMDKQPPLTDAWDEGLHPYK---

---KRLHVEIPQHRLDQIAKCAEILGETIYDEFSWYKNTTPVTKDLTQLMINKTWYPTIC
ITGAEGIPHTSNAGNVMRTHTTVKVSVRLPPSFKAADASTVLKEIFETNPPYGAEVTFKM
DKCASGWDSPQTRPELEKALGEASNLFFGKDHVYMGEGGSIPFMKMLHDRFNCQFIVTGL
LGPGSNAHGPNEFLDIPFAKKLLSCVIYLLDAHSKXIK*inlis


Translated Amino Acid sequence (All Frames)
Frame A:
llayw*kyftntfkiy*nsksitii*crmgnqwlyrrsnsiiremdlstryqryfm*n*k
n*rintnyfhgsrsnqn*ks*nctfiwshg*tttth*cmg*ritsiqs---

---*kitr*nsttsfrsnrkmc*nfrrnhl**ilmvqkyhssh*rfnpiddqqnlvsnyl
hhrc*rysthfkcw*chenshhr*s*csfttiiqss*cincikrnfrn*stiwc*sylqn
g*mcfrlgfttn*trirksirrsfksflwqrprihg*rwfhpihenvt*pfqlsiyrywf
irsrfkcswsk*ilrysicqeiiklcylfircsfqvx*inkpyfi

Frame B:
CWPTGENILPTLSKYIEIPNQSPLYDAEWATNGYTEEAIQLLEKWILAQGIKGISCEIKR
IEGLTPIIFMVVEATKTEKVKTVLLYGHMDKQPPLTDAWDEGLHPYK---

---KRLHVEIPQHRLDQIAKCAEILGETIYDEFSWYKNTTPVTKDLTQLMINKTWYPTIC
ITGAEGIPHTSNAGNVMRTHTTVKVSVRLPPSFKAADASTVLKEIFETNPPYGAEVTFKM
DKCASGWDSPQTRPELEKALGEASNLFFGKDHVYMGEGGSIPFMKMLHDRFNCQFIVTGL
LGPGSNAHGPNEFLDIPFAKKLLSCVIYLLDAHSKXIK*inlis

Frame C:
vgllvkifyqhfqnilkfqinhhymmqngqpmviqkkqfny*rngs*hkvskvfhvklke
lkd*hqlfsw*skqpklkklklyfymvtwinnhhslmhgmkdyihtk---

---kdytlkfhniv*iksqnvlkf*akpsmmnshgtkiplqslki*pn**stklgiqlfa
spvlkvfhtlqmlvms*eltpplklvfvyhhhskqlmhqly*kkfsklihhmvlklpskw
invlqvgihhkldqn*kkh*eklqifslakttytwvkvvpshs*kcymtvsivnlsllvy
*vqvqmlmvqmns*ifhlprny*vvlfiy*mlipsxlnk*tlfh

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFO381 (AFO381Q) /CSM/AF/AFO3-D/AFO381Q.Seq.d/ 1917 0.0
AFL825 (AFL825Q) /CSM/AF/AFL8-B/AFL825Q.Seq.d/ 1314 0.0
AFK591 (AFK591Q) /CSM/AF/AFK5-D/AFK591Q.Seq.d/ 1314 0.0
AFG485 (AFG485Q) /CSM/AF/AFG4-D/AFG485Q.Seq.d/ 1314 0.0
AFH575 (AFH575Q) /CSM/AF/AFH5-D/AFH575Q.Seq.d/ 1312 0.0
AFN766 (AFN766Q) /CSM/AF/AFN7-C/AFN766Q.Seq.d/ 1310 0.0
AFH219 (AFH219Q) /CSM/AF/AFH2-A/AFH219Q.Seq.d/ 1310 0.0
AFD440 (AFD440Q) /CSM/AF/AFD4-B/AFD440Q.Seq.d/ 1310 0.0
AFL657 (AFL657Q) /CSM/AF/AFL6-C/AFL657Q.Seq.d/ 1306 0.0
AFL521 (AFL521Q) /CSM/AF/AFL5-A/AFL521Q.Seq.d/ 1306 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC137602|AC137602.12 Medicago truncatula clone mth2-14k4, complete sequence. 46 0.065 4
BQ112173|BQ112173.1 EST597749 mixed potato tissues Solanum tuberosum cDNA clone STMCF59 3' end, mRNA sequence. 48 0.21 1
BI435340|BI435340.1 EST538101 P. infestans-challenged leaf Solanum tuberosum cDNA clone PPCCD08 5' sequence, mRNA sequence. 48 0.21 1
BI433279|BI433279.1 EST536040 P. infestans-challenged leaf Solanum tuberosum cDNA clone PPCBC62 5' sequence, mRNA sequence. 48 0.21 1
BQ046631|BQ046631.1 EST595749 P. infestans-challenged potato leaf, incompatible reaction Solanum tuberosum cDNA clone BPLI15C18 5' end, mRNA sequence. 48 0.21 1
BI435717|BI435717.1 EST538478 P. infestans-challenged leaf Solanum tuberosum cDNA clone PPCCI86 5' sequence, mRNA sequence. 48 0.21 1
BG591390|BG591390.1 EST499232 P. infestans-challenged leaf Solanum tuberosum cDNA clone BPLI8D17 5' sequence, mRNA sequence. 48 0.21 1
BI435853|BI435853.1 EST538614 P. infestans-challenged leaf Solanum tuberosum cDNA clone PPCCL22 5' sequence, mRNA sequence. 48 0.21 1
CC535979|CC535979.1 CH240_414D20.TARBAC13P2 CHORI-240 Bos taurus genomic clone CH240_414D20, genomic survey sequence. 36 0.35 2
AL354810|AL354810.8 Human DNA sequence from clone RP11-527N12 on chromosome 13. 38 0.36 8
dna update 2003. 9.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AM743169_1072(AM743169|pid:none) Stenotrophomonas maltophilia K2... 209 1e-52
CP001111_978(CP001111|pid:none) Stenotrophomonas maltophilia R55... 208 3e-52
CP000113_526(CP000113|pid:none) Myxococcus xanthus DK 1622, comp... 208 3e-52
AM746676_157(AM746676|pid:none) Sorangium cellulosum 'So ce 56' ... 207 3e-52
AE008923_2905(AE008923|pid:none) Xanthomonas axonopodis pv. citr... 207 3e-52
AM039952_3097(AM039952|pid:none) Xanthomonas campestris pv. vesi... 207 4e-52
AE016828_97(AE016828|pid:none) Coxiella burnetii RSA 493, comple... 194 5e-48
CP001020_1727(CP001020|pid:none) Coxiella burnetii CbuK_Q154, co... 194 5e-48
CP000733_1810(CP000733|pid:none) Coxiella burnetii Dugway 5J108-... 194 5e-48
BX571966_664(BX571966|pid:none) Burkholderia pseudomallei strain... 190 7e-47
protein update 2009. 4.26
PSORT

psg: 0.75 gvh: 0.52 alm: 0.38 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.06 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: cytoplasmic
32.0 %: nuclear
8.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for AFO381 is cyt

5' end seq. ID AFO381F
5' end seq.
>AFO381F.Seq
CTGTTGGCCTACTGGTGAAAATATTTTACCAACACTTTCAAAATATATTGAAATTCCAAA
TCAATCACCATTATATGATGCAGAATGGGCAACCAATGGTTATACAGAAGAAGCAATTCA
ATTATTAGAGAAATGGATCTTAGCACAAGGTATCAAAGGTATTTCATGTGAAATTAAAAG
AATTGAAGGATTAACACCAATTATTTTCATGGTAGTCGAAGCAACCAAAACTGAAAAAGT
TAAAACTGTACTTTTATATGGTCACATGGATAAACAACCACCACTCACTGATGCATGGGA
TGAAGGATTACATCCATACAAAGC----------
Length of 5' end seq. 324
3' end seq. ID AFO381Z
3' end seq.
>AFO381Z.Seq
----------TAAAAGATTACACGTTGAAATTCCACAACATCGTTTAGATCAAATCGCAA
AATGTGCTGAAATTTTAGGCGAAACCATCTATGATGAATTCTCATGGTACAAAAATACCA
CTCCAGTCACTAAAGATTTAACCCAATTGATGATCAACAAAACTTGGTATCCAACTATTT
GCATCACCGGTGCTGAAGGTATTCCACACACTTCAAATGCTGGTAATGTCATGAGAACTC
ACACCACCGTTAAAGTTAGTGTTCGTTTACCACCATCATTCAAAGCAGCTGATGCATCAA
CTGTATTAAAAGAAATTTTCGAAACTAATCCACCATATGGTGCTGAAGTTACCTTCAAAA
TGGATAAATGTGCTTCAGGTTGGGATTCACCACAAACTAGACCAGAATTAGAAAAAGCAT
TAGGAGAAGCTTCAAATCTTTTCTTTGGCAAAGACCACGTATACATGGGTGAAGGTGGTT
CCATCCCATTCATGAAAATGTTACATGACCGTTTCAATTGTCAATTTATCGTTACTGGTT
TATTAGGTCCAGGTTCAAATGCTCATGGTCCAAATGAATTCTTAGATATTCCATTTGCCA
AGAAATTATTAAGTTGTGTTATTTATTTATTAGATGCTCATTCCAAGTTNATTAAATAAA
TAAACCTTATTTCATT
Length of 3' end seq. 666
Connected seq. ID AFO381P
Connected seq.
>AFO381P.Seq
CTGTTGGCCTACTGGTGAAAATATTTTACCAACACTTTCAAAATATATTGAAATTCCAAA
TCAATCACCATTATATGATGCAGAATGGGCAACCAATGGTTATACAGAAGAAGCAATTCA
ATTATTAGAGAAATGGATCTTAGCACAAGGTATCAAAGGTATTTCATGTGAAATTAAAAG
AATTGAAGGATTAACACCAATTATTTTCATGGTAGTCGAAGCAACCAAAACTGAAAAAGT
TAAAACTGTACTTTTATATGGTCACATGGATAAACAACCACCACTCACTGATGCATGGGA
TGAAGGATTACATCCATACAAAGC----------TAAAAGATTACACGTTGAAATTCCAC
AACATCGTTTAGATCAAATCGCAAAATGTGCTGAAATTTTAGGCGAAACCATCTATGATG
AATTCTCATGGTACAAAAATACCACTCCAGTCACTAAAGATTTAACCCAATTGATGATCA
ACAAAACTTGGTATCCAACTATTTGCATCACCGGTGCTGAAGGTATTCCACACACTTCAA
ATGCTGGTAATGTCATGAGAACTCACACCACCGTTAAAGTTAGTGTTCGTTTACCACCAT
CATTCAAAGCAGCTGATGCATCAACTGTATTAAAAGAAATTTTCGAAACTAATCCACCAT
ATGGTGCTGAAGTTACCTTCAAAATGGATAAATGTGCTTCAGGTTGGGATTCACCACAAA
CTAGACCAGAATTAGAAAAAGCATTAGGAGAAGCTTCAAATCTTTTCTTTGGCAAAGACC
ACGTATACATGGGTGAAGGTGGTTCCATCCCATTCATGAAAATGTTACATGACCGTTTCA
ATTGTCAATTTATCGTTACTGGTTTATTAGGTCCAGGTTCAAATGCTCATGGTCCAAATG
AATTCTTAGATATTCCATTTGCCAAGAAATTATTAAGTTGTGTTATTTATTTATTAGATG
CTCATTCCAAGTTNATTAAATAAATAAACCTTATTTCATT
Length of connected seq. 990
Full length Seq ID -
Full length Seq. -
Length of full length seq. -