VHK221
Library VH
(Link to library)
Clone ID VHK221
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VHK221P
(Link to Original site)
Representative DNA sequence
>VHK221 (VHK221Q) /CSM/VH/VHK2-A/VHK221Q.Seq.d/
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA
TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG
GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA
GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG
TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA
AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG
AAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTXXXXXXX
XXXTAACCACGAATGGGATAAAAATGATGCCATGAACATTTGGTCTTTCGGTCCAGAAGG
TAACGGTGCCAATCTCCTCGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAATTAA
AGATTCTTTCGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAA
CATGAGAGGTATCCGTTTCAATCTTTATGATGTCACCCTCCACACTGATGCCATCCACAG
AGGTGGTGGTCAAATCATCCCAACTGCTCGTCGTGTACTCTATGCTGCTGAATTAACTGC
CTCCCCAACTCTCTTAGAACCAATCTACTTAGTAGAAATTACTGCCCCAGAAAACGCTAT
TGGTGGTATTTACTCTGTACTCAATCGTCGTAGAGGTATTGTTATTGGTGAAGAACGTCG
TATCGGTTCCCCATTATTCTCTGTCAAAGCTCATTTACCAGTATTAGAATCCTTCGGTTT
CACCGCTGATTTACGTTCCCACACTGCCGGTCAAGCTTTCCCACAATGTGTCTTCGATCA
TTGGGCTTCAATTGGTGTTGTCAACAAAGATAAGAAAGCCACTGAAGTCGCTTTAGCCAC
CAGAAAGAGAAAAGGTTTAGCCCCAGAAATCCCAGATCTTGACAAATTCCNCGAAAAACT
CTAAACAATTTAAGTCGCACTTGAGTTTTCAAANATAGNAATCAAATCTAAAAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence
LSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKV
SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFS
SEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNTE
EAYLSFRRAIESVNVIV---

---NHEWDKNDAMNIWSFGPEGNGANLLVNVTKGVQYLNEIKDSFVGAFQWATKEGVVCD
ENMRGIRFNLYDVTLHTDAIHRGGGQIIPTARRVLYAAELTASPTLLEPIYLVEITAPEN
AIGGIYSVLNRRRGIVIGEERRIGSPLFSVKAHLPVLESFGFTADLRSHTAGQAFPQCVF
DHWASIGVVNKDKKATEVALATRKRKGLAPEIPDLDKFXEKL*ti*valefsxixikskk


Translated Amino Acid sequence (All Frames)
Frame A:
nsrvqkk*stkwlisqsikfvplwtvvkiseicllllmsitvkplyqil*skelvllpik
flvi*dichvvlmnksvvsplnlhlyhftskcqrktnyqlvvlhtnf*silsipqvtlis
vqk*llpsvllmvl*slsiaskvfaykpklyyvkpslnvsnqsysstksivsy*nsn*tl
kklislsvellnpsmsl---

---*prmg*k*chehlvfrsrr*rcqsprqchqrcsife*n*rffrwcfpmghqrrccl*
*kherypfqsl*chpph*chpqrwwsnhpncssctlcc*inclpnslrtnllsrnycprk
rywwyllctqss*rycyw*rtsyrfpiilcqssftsirilrfhr*ftfphcrssfptmcl
rslgfnwccqqr*esh*srfshqkekrfsprnprs*qiprktlnnlsrt*vfkxxnqi*k
k

Frame B:
tleckkskvqng*fhnrsnschygps*kyqkyvcycscrsr*nhfirffnpkswyycr*s
fw*yeiyvmsc**trawyhh*ificitslrnakgrqitswlyftrifnqsyrfprsr*fq
frsnccppcy*wcfsryrlrrrclrtnrncitssrr*tyqtslirqqsrsflirtpikh*
rslslfp*sy*irqchc---

---NHEWDKNDAMNIWSFGPEGNGANLLVNVTKGVQYLNEIKDSFVGAFQWATKEGVVCD
ENMRGIRFNLYDVTLHTDAIHRGGGQIIPTARRVLYAAELTASPTLLEPIYLVEITAPEN
AIGGIYSVLNRRRGIVIGEERRIGSPLFSVKAHLPVLESFGFTADLRSHTAGQAFPQCVF
DHWASIGVVNKDKKATEVALATRKRKGLAPEIPDLDKFXEKL*ti*valefsxixikskk

Frame C:
LSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKV
SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFS
SEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNTE
EAYLSFRRAIESVNVIV---

---ttngikmmp*tfglsvqkvtvpisssmspkvfni*mklkilslvlsngppkkvlfvm
kt*evsvsifmmspstlmpstevvvkssqllvvysmlln*lppqls*nqst**kllpqkt
llvvftlysivvevlllvknvvsvphyslskliyqy*npsvspliyvptlpvklshnvss
iiglqlvlstkirkplksl*pperekv*pqksqiltnsxknskqfkshlsfqx*xsnlkk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHK221 (VHK221Q) /CSM/VH/VHK2-A/VHK221Q.Seq.d/ 2478 0.0
VHQ186 (VHQ186Q) /CSM/VH/VHQ1-D/VHQ186Q.Seq.d/ 1382 0.0
VHP870 (VHP870Q) /CSM/VH/VHP8-C/VHP870Q.Seq.d/ 1382 0.0
VHP454 (VHP454Q) /CSM/VH/VHP4-C/VHP454Q.Seq.d/ 1382 0.0
VHO819 (VHO819Q) /CSM/VH/VHO8-A/VHO819Q.Seq.d/ 1382 0.0
VHK471 (VHK471Q) /CSM/VH/VHK4-C/VHK471Q.Seq.d/ 1382 0.0
VHJ347 (VHJ347Q) /CSM/VH/VHJ3-B/VHJ347Q.Seq.d/ 1382 0.0
VHJ291 (VHJ291Q) /CSM/VH/VHJ2-D/VHJ291Q.Seq.d/ 1382 0.0
VHJ269 (VHJ269Q) /CSM/VH/VHJ2-C/VHJ269Q.Seq.d/ 1382 0.0
VHQ434 (VHQ434Q) /CSM/VH/VHQ4-B/VHQ434Q.Seq.d/ 1376 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ446805) Dictyostelium discoideum cDNA clone:ddv63k21, 3' ... 1382 0.0 1
(BJ446420) Dictyostelium discoideum cDNA clone:ddv62l18, 3' ... 1382 0.0 1
(BJ446098) Dictyostelium discoideum cDNA clone:ddv61l14, 3' ... 1382 0.0 1
(BJ445616) Dictyostelium discoideum cDNA clone:ddv60f06, 3' ... 1382 0.0 1
(BJ443030) Dictyostelium discoideum cDNA clone:ddv51n18, 3' ... 1382 0.0 1
(BJ442835) Dictyostelium discoideum cDNA clone:ddv51i06, 3' ... 1382 0.0 1
(BJ442412) Dictyostelium discoideum cDNA clone:ddv49e24, 3' ... 1382 0.0 1
(BJ442356) Dictyostelium discoideum cDNA clone:ddv49i18, 3' ... 1382 0.0 1
(BJ442295) Dictyostelium discoideum cDNA clone:ddv49n11, 3' ... 1382 0.0 1
(BJ438986) Dictyostelium discoideum cDNA clone:ddv39g06, 3' ... 1382 0.0 1
dna update 2008.11.21
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AY391422_1(AY391422|pid:none) Danio rerio eukaryotic translation... 287 7e-76
AY069933_1(AY069933|pid:none) Rana sylvatica eukaryotic translat... 286 1e-75
BT071866_1(BT071866|pid:none) Salmo salar clone ssal-rgf-501-088... 284 4e-75
BT059038_1(BT059038|pid:none) Salmo salar clone ssal-rgf-521-328... 284 4e-75
BC089730_1(BC089730|pid:none) Xenopus tropicalis MGC108369 prote... 284 6e-75
BT045031_1(BT045031|pid:none) Salmo salar clone ssal-rgf-510-120... 283 7e-75
BT072304_1(BT072304|pid:none) Salmo salar clone ssal-rgf-520-280... 283 1e-74
BC060707_1(BC060707|pid:none) Mus musculus eukaryotic translatio... 281 3e-74
AK161993_1(AK161993|pid:none) Mus musculus 12 days embryo male w... 281 3e-74
AK298498_1(AK298498|pid:none) Homo sapiens cDNA FLJ56548 complet... 281 3e-74
protein update 2009. 7.15
PSORT

psg: 0.71 gvh: 0.38 alm: 0.34 top: 0.53 tms: 0.00 mit: 0.30 mip: 0.00
nuc: 0.04 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
36.0 %: nuclear
4.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for VHK221 is cyt

5' end seq. ID VHK221F
5' end seq.
>VHK221F.Seq
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA
TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG
GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA
GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG
TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA
AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG
AAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTNNNNNNN
NNN
Length of 5' end seq. 603
3' end seq. ID VHK221Z
3' end seq.
>VHK221Z.Seq
NNNNNNNNNNTAACCACGAATGGGATAAAAATGATGCCATGAACATTTGGTCTTTCGGTC
CAGAAGGTAACGGTGCCAATCTCCTCGTCAATGTCACCAAAGGTGTTCAATATTTGAATG
AAATTAAAGATTCTTTCGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTG
ATGAAAACATGAGAGGTATCCGTTTCAATCTTTATGATGTCACCCTCCACACTGATGCCA
TCCACAGAGGTGGTGGTCAAATCATCCCAACTGCTCGTCGTGTACTCTATGCTGCTGAAT
TAACTGCCTCCCCAACTCTCTTAGAACCAATCTACTTAGTAGAAATTACTGCCCCAGAAA
ACGCTATTGGTGGTATTTACTCTGTACTCAATCGTCGTAGAGGTATTGTTATTGGTGAAG
AACGTCGTATCGGTTCCCCATTATTCTCTGTCAAAGCTCATTTACCAGTATTAGAATCCT
TCGGTTTCACCGCTGATTTACGTTCCCACACTGCCGGTCAAGCTTTCCCACAATGTGTCT
TCGATCATTGGGCTTCAATTGGTGTTGTCAACAAAGATAAGAAAGCCACTGAAGTCGCTT
TAGCCACCAGAAAGAGAAAAGGTTTAGCCCCAGAAATCCCAGATCTTGACAAATTCCNCG
AAAAACTCTAAACAATTTAAGTCGCACTTGAGTTTTCAAANATAGNAATCAAATCTAAAA
AAAA
Length of 3' end seq. 724
Connected seq. ID VHK221P
Connected seq.
>VHK221P.Seq
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA
TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG
GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA
GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG
TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA
AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG
AAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTT-------
---TAACCACGAATGGGATAAAAATGATGCCATGAACATTTGGTCTTTCGGTCCAGAAGG
TAACGGTGCCAATCTCCTCGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAATTAA
AGATTCTTTCGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAA
CATGAGAGGTATCCGTTTCAATCTTTATGATGTCACCCTCCACACTGATGCCATCCACAG
AGGTGGTGGTCAAATCATCCCAACTGCTCGTCGTGTACTCTATGCTGCTGAATTAACTGC
CTCCCCAACTCTCTTAGAACCAATCTACTTAGTAGAAATTACTGCCCCAGAAAACGCTAT
TGGTGGTATTTACTCTGTACTCAATCGTCGTAGAGGTATTGTTATTGGTGAAGAACGTCG
TATCGGTTCCCCATTATTCTCTGTCAAAGCTCATTTACCAGTATTAGAATCCTTCGGTTT
CACCGCTGATTTACGTTCCCACACTGCCGGTCAAGCTTTCCCACAATGTGTCTTCGATCA
TTGGGCTTCAATTGGTGTTGTCAACAAAGATAAGAAAGCCACTGAAGTCGCTTTAGCCAC
CAGAAAGAGAAAAGGTTTAGCCCCAGAAATCCCAGATCTTGACAAATTCCNCGAAAAACT
CTAAACAATTTAAGTCGCACTTGAGTTTTCAAANATAGNAATCAAATCTAAAAAAAA
Length of connected seq. 1307
Full length Seq ID -
Full length Seq. -
Length of full length seq. -