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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFO379
Library AF
(Link to library)
Clone ID AFO379
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16561-1
Original site URL
Representative seq. ID AFO379Z
(Link to Original site)
Representative DNA sequence 
>AFO379 (AFO379Q) /CSM/AF/AFO3-D/AFO379Q.Seq.d/
XXXXXXXXXXTNNNNNNNNNANTTNAAGNTANNNNNNNNTTTNNNANTNTNNNNNNAAAN
NTTNAANANAANNNANGNNTTTCNNNNANATNANNANNGTNTNATTTTNNNTGGTAANNA
TTANAANATGGTNGNNNTNTNTNNTNATTNCAATATNCAAAAANAATNNNNTNTNCNNTT
GGTCNTNANATTAANAGGTGGTATNNAAATNTTTGTCNNAACATTAANTGGTAAGACCAT
CACTNTTNAAGTTGAGGGNTCANATAATATTGAAAATGTTAAAACAAAGATTCAAGACAA
AGAAGGTATCCCACCAGACCAACAAAGATTAATTTTCGCTGGTAANCAATTAGAAGATGG
TCGTACTCTCTNTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTCCTCAGATT
AAGAGGTGGTATGCAAATTTTTGTCAAAACCCTCACTGGTAAGACTATTACACTCGAAGT
TGAAGGTTCTGATAACATTGAGAATGTTAAAGCCAAAATCCAAGACAAAGAAGGTATTCC
ACCGGATCAACAACGTCTCATTTTCGCCGGTAAACAATTGGAGGATGGTCGTACTCTCTC
TGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTTCTCAGATTAAGAGGTGGTAT
GCAAATTTTTGTAAAAACTCTCACTGGTAAAACCATTACACTCGAAGTTGAAGGTAGTGA
CAACATTGAGAATGTAAAAACAAAAATTCAAGACAAAGAAGGTATCCC
sequence update 2001. 6. 1
Translated Amino Acid sequence 
---XXXXKXXXXXXXXXXXXXXXXXFXXXXXXXIXXGXXXXMVXXXXXXNXQKXXXXXLV
XXLXGGXXXFVXTLXGKTITXXVEGSXNIENVKTKIQDKEGIPPDQQRLIFAGXQLEDGR
TLXDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEGSDNIENVKAKIQDKEGIPP
DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEGSDN
IENVKTKIQDKEGI
Translated Amino Acid sequence (All Frames) 
Frame A:
---xxxxxxxxxxxxxxxkxxxxxxxfxxxxxvxfxxvxixxwxxxxxixixkxnxxxxw
sxx*xvvxkxlsxh*xvrpslxklrxxiilkmlkqrfktkkvshqtnkd*fslvxn*kmv
vlsxittfkrnplsi*ssd*evvckflskpslvrllhsklkvlitlrmlkpksktkkvfh
rinnvsfspvnnwrmvvlslittfkrnplsi*fsd*evvckfl*klslvkplhsklkvvt
tlrm*kqkfktkkvs


Frame B:
---xxxxxxxxxfxxxxxxxxxxxxxsxxxxxxxfxw*xlxxgxxxxxxqyxkxxxxxxg
xxixrwyxnxcxnixw*dhhxxs*gxx*y*kc*nkdsrqrryptrptkinfrw*xirrws
ysl*lqhskgihspfspqikrwyanfcqnphw*dyytrs*rf**h*ec*sqnprqrryst
gsttshfrr*tiggwsysl*lqhskgihspfssqikrwyanfcknshw*nhytrs*r**q
h*ecknknsrqrryp


Frame C:
---XXXXKXXXXXXXXXXXXXXXXXFXXXXXXXIXXGXXXXMVXXXXXXNXQKXXXXXLV
XXLXGGXXXFVXTLXGKTITXXVEGSXNIENVKTKIQDKEGIPPDQQRLIFAGXQLEDGR
TLXDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEGSDNIENVKAKIQDKEGIPP
DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEGSDN
IENVKTKIQDKEGI
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFO379 (AFO379Q) /CSM/AF/AFO3-D/AFO379Q.Seq.d/                       1074   0.0
VFJ305 (VFJ305Q) /CSM/VF/VFJ3-A/VFJ305Q.Seq.d/                       1066   0.0
VFI713 (VFI713Q) /CSM/VF/VFI7-A/VFI713Q.Seq.d/                       1066   0.0
SFL114 (SFL114Q) /CSM/SF/SFL1-A/SFL114Q.Seq.d/                       1066   0.0
SFK603 (SFK603Q) /CSM/SF/SFK6-A/SFK603Q.Seq.d/                       1066   0.0
SFI804 (SFI804Q) /CSM/SF/SFI8-A/SFI804Q.Seq.d/                       1066   0.0
SFI250 (SFI250Q) /CSM/SF/SFI2-C/SFI250Q.Seq.d/                       1066   0.0
SFH711 (SFH711Q) /CSM/SF/SFH7-A/SFH711Q.Seq.d/                       1066   0.0
SFG889 (SFG889Q) /CSM/SF/SFG8-D/SFG889Q.Seq.d/                       1066   0.0
SFG575 (SFG575Q) /CSM/SF/SFG5-D/SFG575Q.Seq.d/                       1066   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

M19491|M19491.1 Slime mold (D.discoideum) ubiquitin p229C/pLK229 gene, complete cds.  1059  0.0  2
M23748|M23748.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB19.  1043  0.0  2
M19666|M19666.1 Slime mold (D.discoideum) ubiquitin gene, 3' end, clone p229C.  1043  0.0  2
M23754|M23754.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB2.   620  e-174  2
M23753|M23753.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB14.   617  e-173  2
M19492|M19492.1 Slime mold (D.discoideum) ubiquitin lambda-229 gene, complete cds.   605  e-169  2
M23751|M23751.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB18.   452  e-127  3
M23752|M23752.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB17.   452  e-124  3
CF181989|CF181989.1 ISO4G3F Iso cDNA Isotricha sp. BBF-2003 cDNA similar to ubiquitin, mRNA sequence.   109  3e-78  5
CF181994|CF181994.1 ISO4G8F Iso cDNA Isotricha sp. BBF-2003 cDNA similar to ubiquitin, mRNA sequence.   109  3e-78  5
dna update 2003. 9.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A27806(A27806) polyubiquitin 5 (clone pLK229) - slime mold (Dict...   356   5e-97
M19666_1(M19666|pid:none) Slime mold (D.discoideum) ubiquitin ge...   356   5e-97
B34080(B34080)polyubiquitin 5 (clone DCUB19) - slime mold (Dicty...   356   5e-97
M23754_1(M23754|pid:none) D.discoideum ubiquitin mRNA, complete ...   352   7e-96
B27806(B27806) ubiquitin (clone lambda229) - slime mold (Dictyos...   341   1e-92
AY957885_1(AY957885|pid:none) Gracilaria lemaneiformis polyubiqu...   340   2e-92
AB021974_1(AB021974|pid:none) Bombyx mori UBI3 mRNA for polyubiq...   338   1e-91
S53719(S53719;S73107;S71069)polyubiquitin 6 - red alga (Gracilar...   338   1e-91
Y12081_1(Y12081|pid:none) Suberites domuncula mRNA for polyubiqu...   338   1e-91
S32020(S32020) polyubiquitin 6 - Geodia cydonium  &X70917_1(X709...   338   1e-91
protein update 2009. 4.26
PSORT 

 psg: 0.80  gvh: 0.56  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 1.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: extracellular, including cell wall
	  4.0 %: endoplasmic reticulum

>> prediction for AFO379 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFO379Z
3' end seq. 
>AFO379Z.Seq
----------TNNNNNNNNNANTTNAAGNTANNNNNNNNTTTNNNANTNTNNNNNNAAAN
NTTNAANANAANNNANGNNTTTCNNNNANATNANNANNGTNTNATTTTNNNTGGTAANNA
TTANAANATGGTNGNNNTNTNTNNTNATTNCAATATNCAAAAANAATNNNNTNTNCNNTT
GGTCNTNANATTAANAGGTGGTATNNAAATNTTTGTCNNAACATTAANTGGTAAGACCAT
CACTNTTNAAGTTGAGGGNTCANATAATATTGAAAATGTTAAAACAAAGATTCAAGACAA
AGAAGGTATCCCACCAGACCAACAAAGATTAATTTTCGCTGGTAANCAATTAGAAGATGG
TCGTACTCTCTNTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTCCTCAGATT
AAGAGGTGGTATGCAAATTTTTGTCAAAACCCTCACTGGTAAGACTATTACACTCGAAGT
TGAAGGTTCTGATAACATTGAGAATGTTAAAGCCAAAATCCAAGACAAAGAAGGTATTCC
ACCGGATCAACAACGTCTCATTTTCGCCGGTAAACAATTGGAGGATGGTCGTACTCTCTC
TGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTTCTCAGATTAAGAGGTGGTAT
GCAAATTTTTGTAAAAACTCTCACTGGTAAAACCATTACACTCGAAGTTGAAGGTAGTGA
CAACATTGAGAATGTAAAAACAAAAATTCAAGACAAAGAAGGTATCCC
Length of 3' end seq. 758
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -