VHK211
Library VH
(Link to library)
Clone ID VHK211
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VHK211P
(Link to Original site)
Representative DNA sequence
>VHK211 (VHK211Q) /CSM/VH/VHK2-A/VHK211Q.Seq.d/
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA
TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG
GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA
GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG
TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA
AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG
AAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGXXXXX
XXXXXACAAANTCCNCNAAAAACTNTNAACNANTTAAGTNGCCCCTTGAGNTTTCNAAAA
NAGNAATCNAATTTAAAAAAAATTTTAAAAAAAAAATAATAAAAAAAAAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence
LSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKV
SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFS
SEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNTE
EAYLSFRRAIESVNVIV---

---TXSXKNXXXXKXPLEXSKXXIXFKKNFKKKIIKKKK


Translated Amino Acid sequence (All Frames)
Frame A:
nsrvqkk*stkwlisqsikfvplwtvvkiseicllllmsitvkplyqil*skelvllpik
flvi*dichvvlmnksvvsplnlhlyhftskcqrktnyqlvvlhtnf*silsipqvtlis
vqk*llpsvllmvl*slsiaskvfaykpklyyvkpslnvsnqsysstksivsy*nsn*tl
kklislsvellnpsmsll---

---TXSXKNXXXXKXPLEXSKXXIXFKKNFKKKIIKKKK

Frame B:
tleckkskvqng*fhnrsnschygps*kyqkyvcycscrsr*nhfirffnpkswyycr*s
fw*yeiyvmsc**trawyhh*ificitslrnakgrqitswlyftrifnqsyrfprsr*fq
frsnccppcy*wcfsryrlrrrclrtnrncitssrr*tyqtslirqqsrsflirtpikh*
rslslfp*sy*irqchcw---

---qxpxktxnxlsxplxfxkxxsnlkkilkkk**kkk

Frame C:
LSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKV
SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFS
SEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNTE
EAYLSFRRAIESVNVIV---

---kxxxklxtx*vap*xfxxxnxi*kkf*kknnkkkk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHP874 (VHP874Q) /CSM/modify/h12/F/treated/VHP874Q.Seq.d/ 1140 0.0
VHH874 (VHH874Q) /CSM/VH/VHH8-D/VHH874Q.Seq.d/ 1140 0.0
VHG874 (VHG874Q) /CSM/VH/VHG8-D/VHG874Q.Seq.d/ 1140 0.0
VHP874 (VHP874Q) /CSM/modify/h12/F/treated/VHP874Q.Seq.d/ 1140 0.0
VHH874 (VHH874Q) /CSM/VH/VHH8-D/VHH874Q.Seq.d/ 1140 0.0
VHG874 (VHG874Q) /CSM/VH/VHG8-D/VHG874Q.Seq.d/ 1140 0.0
VHQ476 (VHQ476Q) /CSM/VH/VHQ4-D/VHQ476Q.Seq.d/ 1140 0.0
VHQ473 (VHQ473Q) /CSM/VH/VHQ4-D/VHQ473Q.Seq.d/ 1140 0.0
VHQ469 (VHQ469Q) /CSM/VH/VHQ4-C/VHQ469Q.Seq.d/ 1140 0.0
VHQ463 (VHQ463Q) /CSM/VH/VHQ4-C/VHQ463Q.Seq.d/ 1140 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ427897) Dictyostelium discoideum cDNA clone:ddv63p23, 5' ... 1136 0.0 1
(BJ427892) Dictyostelium discoideum cDNA clone:ddv63o22, 5' ... 1136 0.0 1
(BJ427891) Dictyostelium discoideum cDNA clone:ddv63o21, 5' ... 1136 0.0 1
(BJ427888) Dictyostelium discoideum cDNA clone:ddv63n23, 5' ... 1136 0.0 1
(BJ427875) Dictyostelium discoideum cDNA clone:ddv63k24, 5' ... 1136 0.0 1
(BJ427874) Dictyostelium discoideum cDNA clone:ddv63k23, 5' ... 1136 0.0 1
(BJ427873) Dictyostelium discoideum cDNA clone:ddv63k22, 5' ... 1136 0.0 1
(BJ427872) Dictyostelium discoideum cDNA clone:ddv63k21, 5' ... 1136 0.0 1
(BJ427858) Dictyostelium discoideum cDNA clone:ddv63h20, 5' ... 1136 0.0 1
(BJ427848) Dictyostelium discoideum cDNA clone:ddv63f21, 5' ... 1136 0.0 1
dna update 2008.11.21
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AM270011_29(AM270011|pid:none) Aspergillus niger contig An02c016... 263 3e-69
AF248644_1(AF248644|pid:none) Filobasidiella neoformans var. neo... 258 1e-67
AF083031_87(AF083031|pid:none) Guillardia theta nucleomorph chro... 256 4e-67
(Q6FYA7) RecName: Full=Elongation factor 2; Short=EF-2;... 256 4e-67
AY026074_1(AY026074|pid:none) Monosiga brevicollis elongation fa... 256 5e-67
BC089730_1(BC089730|pid:none) Xenopus tropicalis MGC108369 prote... 256 6e-67
(Q874B9) RecName: Full=Elongation factor 2; Short=EF-2;... 256 6e-67
AY391422_1(AY391422|pid:none) Danio rerio eukaryotic translation... 254 2e-66
AK032997_1(AK032997|pid:none) Mus musculus 12 days embryo male w... 253 4e-66
DQ357217_1(DQ357217|pid:none) Leishmania braziliensis elongation... 253 4e-66
protein update 2009. 7.15
PSORT

psg: 0.71 gvh: 0.38 alm: 0.34 top: 0.53 tms: 0.00 mit: 0.30 mip: 0.00
nuc: 0.04 erl: 0.00 erm: 0.60 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: nuclear
32.0 %: cytoplasmic
20.0 %: mitochondrial
8.0 %: peroxisomal
4.0 %: vacuolar

>> prediction for VHK211 is nuc

5' end seq. ID VHK211F
5' end seq.
>VHK211F.Seq
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA
TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG
GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA
GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG
TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA
AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG
AAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGNNNNN
NNNNN
Length of 5' end seq. 605
3' end seq. ID VHK211Z
3' end seq.
>VHK211Z.Seq
NNNNNNNNNNACAAANTCCNCNAAAAACTNTNAACNANTTAAGTNGCCCCTTGAGNTTTC
NAAAANAGNAATCNAATTTAAAAAAAATTTTAAAAAAAAAATAATAAAAAAAAAAAAA
Length of 3' end seq. 118
Connected seq. ID VHK211P
Connected seq.
>VHK211P.Seq
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA
TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG
GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA
GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG
TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA
AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG
AAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGG-----
-----ACAAANTCCNCNAAAAACTNTNAACNANTTAAGTNGCCCCTTGAGNTTTCNAAAA
NAGNAATCNAATTTAAAAAAAATTTTAAAAAAAAAATAATAAAAAAAAAAAAA
Length of connected seq. 703
Full length Seq ID -
Full length Seq. -
Length of full length seq. -