VHK209 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VHK209
Library	VH (Link to library)
Clone ID	VHK209 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16260-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VH/VHK2-A/VHK209Q.Seq.d/
Representative seq. ID	VHK209P (Link to Original site)
Representative DNA sequence	>VHK209 (VHK209Q) /CSM/VH/VHK2-A/VHK209Q.Seq.d/ AACTCTCGAGTGCAAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATT CGTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGAT CACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAA GTTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACC ATTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCT GGTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTC AGTTCANAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGC GTCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATC AAACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACT GAAGAAGCTTATCTCTCTTTCCGXXXXXXXXXXTCCAAAGATGATCCAAAAGCTCGTGCT AACTATCTCGCTGATAACCACGAATGGGATAAAAATGATGCCATGAACATTTGGTCTTTC GGTCCAGAAGGTAACGGTGCCAATCTCCTCGTCAATGTCACCAAAGGTGTTCAATATTTG AATGAAATTAAAGATTCTTTCGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTT TGTGATGAAAACATGAGAGGTATCCGTTTCAATCTTTATGATGTCACCCTCCACACTGAT GCCATCCACAGAGGTGGTGGTCAAATCATCCCAACTGCTCGTCGTGTACTCTATGCTGCT GAATTAACTGCCTCCCCAACTCTCTTAGAACCAATCTACTTAGTAGAAATTACTGCCCCA GAAAACGCTATTGGTGGTATTTACTCTGTACTCAATCGTCGTAGAGGTATTGTTATTGGT GAAGAACGTCGTATCGGTTCCCCATTATTCTCTGTCAAAGCTCATTTACCAGTATTAGAA TCCTTCGGTTTCACCGCTGATTTACGTTCCCACACTGCCGGTCAAGCTTTCCCACAATGT GTCTTCGATCATTGGGCTTCAATTGGTGTTGTCAACAAAGATAAGAAAGCCACTGAAGTC GCTTTAGCCACCAGAAAGAGAAAAGGTTTAGCCCCAGAAATCCCAGATCTTGACAAATTC CACGAAAAACTCTAAACAATTTAAGTCGCACTTNAGTTTTCAAANATAGTAATCAAATCT AAAAAAAA
sequence update	2002.10.25
Translated Amino Acid sequence	NSRVQKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADK VSGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDF SSXVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNT EEAYLSF--- ---SKDDPKARANYLADNHEWDKNDAMNIWSFGPEGNGANLLVNVTKGVQYLNEIKDSFV GAFQWATKEGVVCDENMRGIRFNLYDVTLHTDAIHRGGGQIIPTARRVLYAAELTASPTL LEPIYLVEITAPENAIGGIYSVLNRRRGIVIGEERRIGSPLFSVKAHLPVLESFGFTADL RSHTAGQAFPQCVFDHWASIGVVNKDKKATEVALATRKRKGLAPEIPDLDKFHEKLti valxfsxivikskk
Translated Amino Acid sequence (All Frames)	Frame A: NSRVQKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADK VSGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDF SSXVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNT EEAYLSF--- ---SKDDPKARANYLADNHEWDKNDAMNIWSFGPEGNGANLLVNVTKGVQYLNEIKDSFV GAFQWATKEGVVCDENMRGIRFNLYDVTLHTDAIHRGGGQIIPTARRVLYAAELTASPTL LEPIYLVEITAPENAIGGIYSVLNRRRGIVIGEERRIGSPLFSVKAHLPVLESFGFTADL RSHTAGQAFPQCVFDHWASIGVVNKDKKATEVALATRKRKGLAPEIPDLDKFHEKLti valxfsxivikskk Frame B: tleckkkstkwlisqsikfvplwtvvkiseicllllmsitvkplyqilskelvllpik flvidichvvlmnksvvsplnlhlyhftskcqrktnyqlvvlhtnfsilsipqvtlis vxkllpsvllmvlslsiaskvfaykpklyyvkpslnvsnqsysstksivsynsntl kklisls--- ---pkmiqklvltislittngikmmptfglsvqkvtvpisssmspkvfnimklkilsl vlsngppkkvlfvmktevsvsifmmspstlmpstevvvkssqllvvysmllnlppqls nqstkllpqktllvvftlysivvevlllvknvvsvphyslskliyqynpsvspliy vptlpvklshnvssiiglqlvlstkirkplkslpperekvpqksqiltnstknskqfk shxsfqx*snlkk Frame C: lssakkskvqngfhnrsnschygpskyqkyvcycscrsrnhfirffnpkswyycrs fwyeiyvmsc*trawyhhificitslrnakgrqitswlyftrifnqsyrfprsrfq fxsnccppcywcfsryrlrrrclrtnrncitssrrtyqtslirqqsrsflirtpikh rslslfp--- ---qrskssclsr*prmgkchehlvfrsrrrcqsprqchqrcsifenrffrw cfpmghqrrccl*kherypfqslchpphchpqrwwsnhpncssctlccinclpnsl rtnllsrnycprkrywwyllctqssrycywrtsyrfpiilcqssftsirilrfhrft fphcrssfptmclrslgfnwccqqreshsrfshqkekrfsprnprsqiprktlnnls rtxvfkxsnqi*kk
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VHQ491 (VHQ491Q) /CSM/VH/VHQ4-D/VHQ491Q.Seq.d/ 1469 0.0 VHQ476 (VHQ476Q) /CSM/VH/VHQ4-D/VHQ476Q.Seq.d/ 1469 0.0 VHQ434 (VHQ434Q) /CSM/VH/VHQ4-B/VHQ434Q.Seq.d/ 1469 0.0 VHQ410 (VHQ410Q) /CSM/VH/VHQ4-A/VHQ410Q.Seq.d/ 1469 0.0 VHQ212 (VHQ212Q) /CSM/VH/VHQ2-A/VHQ212Q.Seq.d/ 1469 0.0 VHQ208 (VHQ208Q) /CSM/VH/VHQ2-A/VHQ208Q.Seq.d/ 1469 0.0 VHQ186 (VHQ186Q) /CSM/VH/VHQ1-D/VHQ186Q.Seq.d/ 1469 0.0 VHP860 (VHP860Q) /CSM/VH/VHP8-C/VHP860Q.Seq.d/ 1469 0.0 VHP859 (VHP859Q) /CSM/VH/VHP8-C/VHP859Q.Seq.d/ 1469 0.0 VHP847 (VHP847Q) /CSM/VH/VHP8-B/VHP847Q.Seq.d/ 1469 0.0
own update	2004.12.24
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N (BJ446805) Dictyostelium discoideum cDNA clone:ddv63k21, 3' ... 1469 0.0 1 (BJ446787) Dictyostelium discoideum cDNA clone:ddv63h20, 3' ... 1469 0.0 1 (BJ446779) Dictyostelium discoideum cDNA clone:ddv63f24, 3' ... 1469 0.0 1 (BJ446612) Dictyostelium discoideum cDNA clone:ddv63d10, 3' ... 1469 0.0 1 (BJ446590) Dictyostelium discoideum cDNA clone:ddv63o02, 3' ... 1469 0.0 1 (BJ446553) Dictyostelium discoideum cDNA clone:ddv63g04, 3' ... 1469 0.0 1 (BJ446539) Dictyostelium discoideum cDNA clone:ddv63d04, 3' ... 1469 0.0 1 (BJ446398) Dictyostelium discoideum cDNA clone:ddv62h16, 3' ... 1469 0.0 1 (BJ446386) Dictyostelium discoideum cDNA clone:ddv62f16, 3' ... 1469 0.0 1 (BJ446350) Dictyostelium discoideum cDNA clone:ddv62n12, 3' ... 1469 0.0 1
dna update	2008.11.21
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AB171046_1(AB171046\|pid:none) Macaca fascicularis brain cDNA clo... 440 e-122 AY391422_1(AY391422\|pid:none) Danio rerio eukaryotic translation... 301 3e-80 AY069933_1(AY069933\|pid:none) Rana sylvatica eukaryotic translat... 300 8e-80 BC089730_1(BC089730\|pid:none) Xenopus tropicalis MGC108369 prote... 296 9e-79 BT045031_1(BT045031\|pid:none) Salmo salar clone ssal-rgf-510-120... 295 2e-78 BT071866_1(BT071866\|pid:none) Salmo salar clone ssal-rgf-501-088... 295 2e-78 BT059038_1(BT059038\|pid:none) Salmo salar clone ssal-rgf-521-328... 295 2e-78 BC060707_1(BC060707\|pid:none) Mus musculus eukaryotic translatio... 295 2e-78 AK161993_1(AK161993\|pid:none) Mus musculus 12 days embryo male w... 295 2e-78 AK032997_1(AK032997\|pid:none) Mus musculus 12 days embryo male w... 295 2e-78
protein update	2009. 7.15
PSORT	psg: 0.71 gvh: 0.38 alm: 0.34 top: 0.53 tms: 0.00 mit: 0.38 mip: 0.02 nuc: 0.04 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 44.0 %: cytoplasmic 28.0 %: mitochondrial 20.0 %: nuclear 4.0 %: vacuolar 4.0 %: peroxisomal >> prediction for VHK209 is cyt
5' end seq. ID	VHK209F
5' end seq.	>VHK209F.Seq AACTCTCGAGTGCAAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATT CGTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGAT CACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAA GTTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACC ATTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCT GGTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTC AGTTCANAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGC GTCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATC AAACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACT GAAGAAGCTTATCTCTCTTTCCGNNNNNNNNNN
Length of 5' end seq.	573
3' end seq. ID	VHK209Z
3' end seq.	>VHK209Z.Seq NNNNNNNNNNTCCAAAGATGATCCAAAAGCTCGTGCTAACTATCTCGCTGATAACCACGA ATGGGATAAAAATGATGCCATGAACATTTGGTCTTTCGGTCCAGAAGGTAACGGTGCCAA TCTCCTCGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAATTAAAGATTCTTTCGT TGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAACATGAGAGGTAT CCGTTTCAATCTTTATGATGTCACCCTCCACACTGATGCCATCCACAGAGGTGGTGGTCA AATCATCCCAACTGCTCGTCGTGTACTCTATGCTGCTGAATTAACTGCCTCCCCAACTCT CTTAGAACCAATCTACTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGTGGTATTTA CTCTGTACTCAATCGTCGTAGAGGTATTGTTATTGGTGAAGAACGTCGTATCGGTTCCCC ATTATTCTCTGTCAAAGCTCATTTACCAGTATTAGAATCCTTCGGTTTCACCGCTGATTT ACGTTCCCACACTGCCGGTCAAGCTTTCCCACAATGTGTCTTCGATCATTGGGCTTCAAT TGGTGTTGTCAACAAAGATAAGAAAGCCACTGAAGTCGCTTTAGCCACCAGAAAGAGAAA AGGTTTAGCCCCAGAAATCCCAGATCTTGACAAATTCCACGAAAAACTCTAAACAATTTA AGTCGCACTTNAGTTTTCAAANATAGTAATCAAATCTAAAAAAAA
Length of 3' end seq.	765
Connected seq. ID	VHK209P
Connected seq.	>VHK209P.Seq AACTCTCGAGTGCAAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATT CGTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGAT CACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAA GTTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACC ATTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCT GGTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTC AGTTCANAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGC GTCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATC AAACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACT GAAGAAGCTTATCTCTCTTTCCG----------TCCAAAGATGATCCAAAAGCTCGTGCT AACTATCTCGCTGATAACCACGAATGGGATAAAAATGATGCCATGAACATTTGGTCTTTC GGTCCAGAAGGTAACGGTGCCAATCTCCTCGTCAATGTCACCAAAGGTGTTCAATATTTG AATGAAATTAAAGATTCTTTCGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTT TGTGATGAAAACATGAGAGGTATCCGTTTCAATCTTTATGATGTCACCCTCCACACTGAT GCCATCCACAGAGGTGGTGGTCAAATCATCCCAACTGCTCGTCGTGTACTCTATGCTGCT GAATTAACTGCCTCCCCAACTCTCTTAGAACCAATCTACTTAGTAGAAATTACTGCCCCA GAAAACGCTATTGGTGGTATTTACTCTGTACTCAATCGTCGTAGAGGTATTGTTATTGGT GAAGAACGTCGTATCGGTTCCCCATTATTCTCTGTCAAAGCTCATTTACCAGTATTAGAA TCCTTCGGTTTCACCGCTGATTTACGTTCCCACACTGCCGGTCAAGCTTTCCCACAATGT GTCTTCGATCATTGGGCTTCAATTGGTGTTGTCAACAAAGATAAGAAAGCCACTGAAGTC GCTTTAGCCACCAGAAAGAGAAAAGGTTTAGCCCCAGAAATCCCAGATCTTGACAAATTC CACGAAAAACTCTAAACAATTTAAGTCGCACTTNAGTTTTCAAANATAGTAATCAAATCT AAAAAAAA
Length of connected seq.	1318
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas