VHK202 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VHK202
Library	VH (Link to library)
Clone ID	VHK202 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16260-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VH/VHK2-A/VHK202Q.Seq.d/
Representative seq. ID	VHK202P (Link to Original site)
Representative DNA sequence	>VHK202 (VHK202Q) /CSM/VH/VHK2-A/VHK202Q.Seq.d/ AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG AAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAACA CTGAAGATXXXXXXXXXXTCCAAAGATGATCCAAAAGCTCGTGCTAACTATCTCGCTGAT AACCACGAATGGGATAAAAATGATGCCATGAACATTTGGTCTTTCGGTCCAGAAGGTAAC GGTGCCAATCTCCTCGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAATTAAAGAT TCTTTCGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAACATG AGAGGTATCCGTTTCAATCTTTATGATGTCACCCTCCACACTGATGCCATCCACAGAGGT GGTGGTCAAATCATCCCAACTGCTCGTCGTGTACTCTATGCTGCTGAATTAACTGCCTCC CCAACTCTCTTAGAACCAATCTACTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGT GGTATTTACTCTGTACTCAATCGTCGTAGAGGTATTGTTATTGGTGAAGAACGTCGTATC GGTTCCCCATTATTCTCTGTCAAAGCTCATTTACCAGTATTAGAATCCTTCGGTTTCACC GCTGATTTACGTTCCCACACTGCCGGTCAAGCTTTCCCACAATGTGTCTTCGATCATTGG GCTTCAATTGGTGTTGTCAACAAAGATAAGAAAGCCACTGAAGTCGCTTTAGCCACCAGA AAGAGAAAAGGTTTAGCCCCAGAAATCCCAGATCTTGACAAATTCCACGAAAAACTCTAA ACAATTTAAGTCGCACTTGAGTTTTCAAA
sequence update	2002.10.25
Translated Amino Acid sequence	LSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKV SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFS SEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNTE EAYLSFRRAIESVNVIVGNTED--- ---SKDDPKARANYLADNHEWDKNDAMNIWSFGPEGNGANLLVNVTKGVQYLNEIKDSFV GAFQWATKEGVVCDENMRGIRFNLYDVTLHTDAIHRGGGQIIPTARRVLYAAELTASPTL LEPIYLVEITAPENAIGGIYSVLNRRRGIVIGEERRIGSPLFSVKAHLPVLESFGFTADL RSHTAGQAFPQCVFDHWASIGVVNKDKKATEVALATRKRKGLAPEIPDLDKFHEKLti valefs
Translated Amino Acid sequence (All Frames)	Frame A: nsrvqkkstkwlisqsikfvplwtvvkiseicllllmsitvkplyqilskelvllpik flvidichvvlmnksvvsplnlhlyhftskcqrktnyqlvvlhtnfsilsipqvtlis vqkllpsvllmvlslsiaskvfaykpklyyvkpslnvsnqsysstksivsynsntl kklislsvellnpsmsllvtlk--- ---SKDDPKARANYLADNHEWDKNDAMNIWSFGPEGNGANLLVNVTKGVQYLNEIKDSFV GAFQWATKEGVVCDENMRGIRFNLYDVTLHTDAIHRGGGQIIPTARRVLYAAELTASPTL LEPIYLVEITAPENAIGGIYSVLNRRRGIVIGEERRIGSPLFSVKAHLPVLESFGFTADL RSHTAGQAFPQCVFDHWASIGVVNKDKKATEVALATRKRKGLAPEIPDLDKFHEKLti valefs Frame B: tleckkskvqngfhnrsnschygpskyqkyvcycscrsrnhfirffnpkswyycrs fwyeiyvmsctrawyhhificitslrnakgrqitswlyftrifnqsyrfprsrfq frsnccppcywcfsryrlrrrclrtnrncitssrrtyqtslirqqsrsflirtpikh rslslfpsyirqchcwhr--- ---pkmiqklvltislittngikmmptfglsvqkvtvpisssmspkvfnimklkilsl vlsngppkkvlfvmktevsvsifmmspstlmpstevvvkssqllvvysmllnlppqls nqstkllpqktllvvftlysivvevlllvknvvsvphyslskliyqynpsvspliy vptlpvklshnvssiiglqlvlstkirkplkslpperekvpqksqiltnstknskqfk shlsfq Frame C: LSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKV SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFS SEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNTE EAYLSFRRAIESVNVIVGNTED--- ---qrskssclsr*prmgkchehlvfrsrrrcqsprqchqrcsifenrffrw cfpmghqrrccl*kherypfqslchpphchpqrwwsnhpncssctlccinclpnsl rtnllsrnycprkrywwyllctqssrycywrtsyrfpiilcqssftsirilrfhrft fphcrssfptmclrslgfnwccqqreshsrfshqkekrfsprnprsqiprktlnnls rt*vfk
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VHQ323 (VHQ323Q) /CSM/VH/VHQ3-A/VHQ323Q.Seq.d/ 1449 0.0 VHQ287 (VHQ287Q) /CSM/VH/VHQ2-D/VHQ287Q.Seq.d/ 1449 0.0 VHQ218 (VHQ218Q) /CSM/VH/VHQ2-A/VHQ218Q.Seq.d/ 1449 0.0 VHQ186 (VHQ186Q) /CSM/VH/VHQ1-D/VHQ186Q.Seq.d/ 1449 0.0 VHQ171 (VHQ171Q) /CSM/VH/VHQ1-C/VHQ171Q.Seq.d/ 1449 0.0 VHP730 (VHP730Q) /CSM/VH/VHP7-B/VHP730Q.Seq.d/ 1449 0.0 VHP621 (VHP621Q) /CSM/VH/VHP6-A/VHP621Q.Seq.d/ 1449 0.0 VHP602 (VHP602Q) /CSM/VH/VHP6-A/VHP602Q.Seq.d/ 1449 0.0 VHP554 (VHP554Q) /CSM/VH/VHP5-C/VHP554Q.Seq.d/ 1449 0.0 VHP519 (VHP519Q) /CSM/VH/VHP5-A/VHP519Q.Seq.d/ 1449 0.0
own update	2004.12.24
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N (BJ446813) Dictyostelium discoideum cDNA clone:ddv63m22, 3' ... 1449 0.0 1 (BJ446805) Dictyostelium discoideum cDNA clone:ddv63k21, 3' ... 1449 0.0 1 (BJ446732) Dictyostelium discoideum cDNA clone:ddv63m17, 3' ... 1449 0.0 1 (BJ446589) Dictyostelium discoideum cDNA clone:ddv63n05, 3' ... 1449 0.0 1 (BJ446536) Dictyostelium discoideum cDNA clone:ddv63c06, 3' ... 1449 0.0 1 (BJ446410) Dictyostelium discoideum cDNA clone:ddv62k13, 3' ... 1449 0.0 1 (BJ446334) Dictyostelium discoideum cDNA clone:ddv62l07, 3' ... 1449 0.0 1 (BJ446245) Dictyostelium discoideum cDNA clone:ddv62i06, 3' ... 1449 0.0 1 (BJ446222) Dictyostelium discoideum cDNA clone:ddv62e05, 3' ... 1449 0.0 1 (BJ446211) Dictyostelium discoideum cDNA clone:ddv62c02, 3' ... 1449 0.0 1
dna update	2008.11.21
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AY391422_1(AY391422\|pid:none) Danio rerio eukaryotic translation... 302 2e-80 AY069933_1(AY069933\|pid:none) Rana sylvatica eukaryotic translat... 300 6e-80 BC089730_1(BC089730\|pid:none) Xenopus tropicalis MGC108369 prote... 297 7e-79 BT045031_1(BT045031\|pid:none) Salmo salar clone ssal-rgf-510-120... 296 1e-78 BC060707_1(BC060707\|pid:none) Mus musculus eukaryotic translatio... 295 2e-78 AK161993_1(AK161993\|pid:none) Mus musculus 12 days embryo male w... 295 2e-78 AK032997_1(AK032997\|pid:none) Mus musculus 12 days embryo male w... 295 2e-78 (P05197) RecName: Full=Elongation factor 2; Short=EF-2;... 295 2e-78 AJ278147_1(AJ278147\|pid:none) Rattus norvegicus partial Ef-2 gen... 295 2e-78 BT071866_1(BT071866\|pid:none) Salmo salar clone ssal-rgf-501-088... 295 2e-78
protein update	2009. 7.15
PSORT	psg: 0.71 gvh: 0.38 alm: 0.34 top: 0.53 tms: 0.00 mit: 0.30 mip: 0.00 nuc: 0.04 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 52.0 %: cytoplasmic 36.0 %: nuclear 4.0 %: extracellular, including cell wall 4.0 %: cytoskeletal 4.0 %: vacuolar >> prediction for VHK202 is cyt
5' end seq. ID	VHK202F
5' end seq.	>VHK202F.Seq AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG AAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAACA CTGAAGATNNNNNNNNNN
Length of 5' end seq.	618
3' end seq. ID	VHK202Z
3' end seq.	>VHK202Z.Seq NNNNNNNNNNTCCAAAGATGATCCAAAAGCTCGTGCTAACTATCTCGCTGATAACCACGA ATGGGATAAAAATGATGCCATGAACATTTGGTCTTTCGGTCCAGAAGGTAACGGTGCCAA TCTCCTCGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAATTAAAGATTCTTTCGT TGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAACATGAGAGGTAT CCGTTTCAATCTTTATGATGTCACCCTCCACACTGATGCCATCCACAGAGGTGGTGGTCA AATCATCCCAACTGCTCGTCGTGTACTCTATGCTGCTGAATTAACTGCCTCCCCAACTCT CTTAGAACCAATCTACTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGTGGTATTTA CTCTGTACTCAATCGTCGTAGAGGTATTGTTATTGGTGAAGAACGTCGTATCGGTTCCCC ATTATTCTCTGTCAAAGCTCATTTACCAGTATTAGAATCCTTCGGTTTCACCGCTGATTT ACGTTCCCACACTGCCGGTCAAGCTTTCCCACAATGTGTCTTCGATCATTGGGCTTCAAT TGGTGTTGTCAACAAAGATAAGAAAGCCACTGAAGTCGCTTTAGCCACCAGAAAGAGAAA AGGTTTAGCCCCAGAAATCCCAGATCTTGACAAATTCCACGAAAAACTCTAAACAATTTA AGTCGCACTTGAGTTTTCAAA
Length of 3' end seq.	741
Connected seq. ID	VHK202P
Connected seq.	>VHK202P.Seq AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG AAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAACA CTGAAGAT----------TCCAAAGATGATCCAAAAGCTCGTGCTAACTATCTCGCTGAT AACCACGAATGGGATAAAAATGATGCCATGAACATTTGGTCTTTCGGTCCAGAAGGTAAC GGTGCCAATCTCCTCGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAATTAAAGAT TCTTTCGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAACATG AGAGGTATCCGTTTCAATCTTTATGATGTCACCCTCCACACTGATGCCATCCACAGAGGT GGTGGTCAAATCATCCCAACTGCTCGTCGTGTACTCTATGCTGCTGAATTAACTGCCTCC CCAACTCTCTTAGAACCAATCTACTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGT GGTATTTACTCTGTACTCAATCGTCGTAGAGGTATTGTTATTGGTGAAGAACGTCGTATC GGTTCCCCATTATTCTCTGTCAAAGCTCATTTACCAGTATTAGAATCCTTCGGTTTCACC GCTGATTTACGTTCCCACACTGCCGGTCAAGCTTTCCCACAATGTGTCTTCGATCATTGG GCTTCAATTGGTGTTGTCAACAAAGATAAGAAAGCCACTGAAGTCGCTTTAGCCACCAGA AAGAGAAAAGGTTTAGCCCCAGAAATCCCAGATCTTGACAAATTCCACGAAAAACTCTAA ACAATTTAAGTCGCACTTGAGTTTTCAAA
Length of connected seq.	1339
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas