>VHK188 (VHK188Q) /CSM/VH/VHK1-D/VHK188Q.Seq.d/
XXXXXXXXXXTAAGCTACCATGTCTTGAGATTTCTCGTTCCGTAACTTCATTTGGTAGAG
AAATGCTTGATAAGACAAAGAAGATCGTAGAGGAACGTTATACTATCGCCAATGGTTATA
AACATGATGCCGTAATTATCTATGGTGATACAGATTCGGTAATGGTTAAATTTGGTGTAA
AGACCGTCGCAGAGGCAATGGAAATGGGTAGAGATGCTGCCAAGTTTGTAACTACCACTT
TTATTCGTCCAATTAATTTAGATTTTGAAAAGGTTTATTATCCTTATCTTTTAATGGCCA
AGAAAAAGTATGCCGGTTTGTATTGGACAAAACCAGATATTCACGATAGAATGGATGTCA
AAGGTTTGGAAATGATTCGTATTTTCAAACCAATTATGTCAAATCCTGATTTAATTTTCC
ATGGTGAACATACTAGAACCATTGCTCAATCAACACTCAGTGATAATAACAAAGGTTTCT
TTGGTACTTTGAAAAAGAAAAAAGTCTGTATGAATTGTCCAAAGGAATTAACTGATACAG
AATCTACAACTTGTATAAATTGTCAACATAAAGAAGCCTCTCTCTATCAAACCTCTTTGG
AAAAAGTTACAAGTTTAGAAACTAAATTCTCTGAAGCTTGGACTCAATGTCAAC

---KLPCLEISRSVTSFGREMLDKTKKIVEERYTIANGYKHDAVIIYGDTDSVMVKFGVK
TVAEAMEMGRDAAKFVTTTFIRPINLDFEKVYYPYLLMAKKKYAGLYWTKPDIHDRMDVK
GLEMIRIFKPIMSNPDLIFHGEHTRTIAQSTLSDNNKGFFGTLKKKKVCMNCPKELTDTE
STTCINCQHKEASLYQTSLEKVTSLETKFSEAWTQCQ

Frame A:
---KLPCLEISRSVTSFGREMLDKTKKIVEERYTIANGYKHDAVIIYGDTDSVMVKFGVK
TVAEAMEMGRDAAKFVTTTFIRPINLDFEKVYYPYLLMAKKKYAGLYWTKPDIHDRMDVK
GLEMIRIFKPIMSNPDLIFHGEHTRTIAQSTLSDNNKGFFGTLKKKKVCMNCPKELTDTE
STTCINCQHKEASLYQTSLEKVTSLETKFSEAWTQCQ


Frame B:
---syhvlrflvp*lhlvekclirqrrs*rnvilspmvinmmp*lsmviqir*wlnlv*r
psqrqwkwvemlpsl*lpllfvqli*ilkrfiilif*wprksmpvcigqnqiftiewmsk
vwk*fvfsnqlcqili*fsmvnilepllnqhsviitkvslvl*krkksv*ivqrn*liqn
lqlv*ivnikkplsikplwkklqv*klnslklglnvn


Frame C:
---atms*dfsfrnfiw*rna**dkedrrgtlyyrqwl*t*crnylw*yrfgng*iwckd
rrrgngng*rccqvcnyhfyssn*frf*kgllslsfngqekvcrfvldktrysr*ngcqr
fgndsyfqtnyvks*fnfpw*ty*nhcsintq***qrflwyfekekslyelskgin*yri
ynlyklst*rslslsnlfgksykfrn*il*sldsms

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHK188 (VHK188Q) /CSM/VH/VHK1-D/VHK188Q.Seq.d/                       1205   0.0
VHI436 (VHI436Q) /CSM/VH/VHI4-B/VHI436Q.Seq.d/                        488   e-137
VHI193 (VHI193Q) /CSM/VH/VHI1-D/VHI193Q.Seq.d/                        488   e-137
SHL885 (SHL885Q) /CSM/SH/SHL8-D/SHL885Q.Seq.d/                        488   e-137
SHL759 (SHL759Q) /CSM/SH/SHL7-C/SHL759Q.Seq.d/                        488   e-137
SHJ780 (SHJ780Q) /CSM/SH/SHJ7-D/SHJ780Q.Seq.d/                        488   e-137
SHG202 (SHG202Q) /CSM/SH/SHG2-A/SHG202Q.Seq.d/                        488   e-137
SHD876 (SHD876Q) /CSM/SH/SHD8-D/SHD876Q.Seq.d/                        488   e-137
SHD753 (SHD753Q) /CSM/SH/SHD7-C/SHD753Q.Seq.d/                        488   e-137
SHD311 (SHD311Q) /CSM/SH/SHD3-A/SHD311Q.Seq.d/                        488   e-137

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL436219|AL436219.1 T3 end of clone BC0AA002B03 of library BC0AA from strain CBS 767 of Debaryomyces hansenii.    52   1e-12  4
AL437756|AL437756.1 T3 end of clone BC0AA011D03 of library BC0AA from strain CBS 767 of Debaryomyces hansenii.    52   1e-12  4
CD153720|CD153720.1 ML1-0034P-A135-D04-U.B ML1-0034 Schistosoma mansoni cDNA clone ML1-0034P-A135-D04.B, mRNA sequence.    82   1e-11  1
AE016899|AE016899.1 Eremothecium gossypii chromosome VI, section 1 of 6 of the complete sequence.    40   9e-06  2
AE014831|AE014831.1 Plasmodium falciparum 3D7 chromosome 10 section 3 of 7 of the complete sequence.    48   0.007  5
AL033396|AL033396.1 C.albicans cosmid Ca35A5.                      52   0.010  1
X88804|X88804.1 C.albicans POL3 gene.                              52   0.010  1
BH146285|BH146285.1 ENTQQ71TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    46   0.028  2
BS000059|BS000059.1 Pan troglodytes chromosome 22 clone:RP43-022N17, map 22, complete sequences.    40   0.13   3
M64715|M64715.1 Plasmodium falciparum DNA polymerase-delta gene, complete cds.    48   0.16   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54N97) RecName: Full=DNA polymerase delta catalytic subunit;  ...   253   3e-66
L07734_1(L07734|pid:none) Schizosaccharomyces pombe DNA polymera...   180   4e-44
(P30316) RecName: Full=DNA polymerase delta catalytic subunit;  ...   180   4e-44
(O48901) RecName: Full=DNA polymerase delta catalytic subunit;  ...   179   5e-44
AP007162_156(AP007162|pid:none) Aspergillus oryzae RIB40 genomic...   177   2e-43
(Q9LRE6) RecName: Full=DNA polymerase delta catalytic subunit;  ...   177   2e-43
CU928170_421(CU928170|pid:none) Kluyveromyces thermotolerans str...   176   5e-43
FN392320_169(FN392320|pid:none) Pichia pastoris GS115 chromosome...   175   9e-43
CR380958_318(CR380958|pid:none) Candida glabrata strain CBS138 c...   173   3e-42
BT059233_1(BT059233|pid:none) Salmo salar clone ssal-rgf-535-149...   172   1e-41

 psg: 0.64  gvh: 0.39  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 32.0 %: nuclear
	 20.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for VHK188 is cyt

>VHK188Z.Seq
NNNNNNNNNNTAAGCTACCATGTCTTGAGATTTCTCGTTCCGTAACTTCATTTGGTAGAG
AAATGCTTGATAAGACAAAGAAGATCGTAGAGGAACGTTATACTATCGCCAATGGTTATA
AACATGATGCCGTAATTATCTATGGTGATACAGATTCGGTAATGGTTAAATTTGGTGTAA
AGACCGTCGCAGAGGCAATGGAAATGGGTAGAGATGCTGCCAAGTTTGTAACTACCACTT
TTATTCGTCCAATTAATTTAGATTTTGAAAAGGTTTATTATCCTTATCTTTTAATGGCCA
AGAAAAAGTATGCCGGTTTGTATTGGACAAAACCAGATATTCACGATAGAATGGATGTCA
AAGGTTTGGAAATGATTCGTATTTTCAAACCAATTATGTCAAATCCTGATTTAATTTTCC
ATGGTGAACATACTAGAACCATTGCTCAATCAACACTCAGTGATAATAACAAAGGTTTCT
TTGGTACTTTGAAAAAGAAAAAAGTCTGTATGAATTGTCCAAAGGAATTAACTGATACAG
AATCTACAACTTGTATAAATTGTCAACATAAAGAAGCCTCTCTCTATCAAACCTCTTTGG
AAAAAGTTACAAGTTTAGAAACTAAATTCTCTGAAGCTTGGACTCAATGTCAAC