VHK181
Library VH
(Link to library)
Clone ID VHK181
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U14837-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VHK181 (VHK181Q) /CSM/VH/VHK1-D/VHK181Q.Seq.d/
XXXXXXXXXXTTTGTCATCATCTGCTGATGGTACTGTTTCACTTTGGAATACAACAACTA
GTGAACAATTATATACTCTCCAACATAGCAATGGTTTATCATATATTCCAACCTCTATAG
CATTACCTGCAACTGAAAATAATAGAAAACTTTTAACTTCTTATAATGATGGTTCAATAT
TATTATTTGATTTAGAAACTCAACAAATTATATCACAATTAAAACAAGGTAGTAGTAATA
ATAATAATAATAATAATAATAATAGTCAAATTAATAAAATTGTATCACATCCATTTATGC
CATTAGCAATGACTGGTTCTGAAGATCATAAAATTGAATTTTTCGATCTAAATAGTAATA
CCGTTGTTCATTCTATGATCGCTCATTCAAATTCAATCTCATCTTTAACAATCGATCCAT
CTGGACTTTATATTGCAAGTTGTGCTCATGATTCCTCTATTAGGTTTTGGGATATCTCTT
sequence update 2002. 9.10
Translated Amino Acid sequence
---LSSSADGTVSLWNTTTSEQLYTLQHSNGLSYIPTSIALPATENNRKLLTSYNDGSIL
LFDLETQQIISQLKQGSSNNNNNNNNNSQINKIVSHPFMPLAMTGSEDHKIEFFDLNSNT
VVHSMIAHSNSISSLTIDPSGLYIASCAHDSSIRFWDIS


Translated Amino Acid sequence (All Frames)
Frame A:
---LSSSADGTVSLWNTTTSEQLYTLQHSNGLSYIPTSIALPATENNRKLLTSYNDGSIL
LFDLETQQIISQLKQGSSNNNNNNNNNSQINKIVSHPFMPLAMTGSEDHKIEFFDLNSNT
VVHSMIAHSNSISSLTIDPSGLYIASCAHDSSIRFWDIS


Frame B:
---chhllmvlfhfgiqqlvnnyilsniamvyhifqpl*hylqlkiienf*llimmvqyy
yli*klnklyhn*nkvvviiiiiiiiivkliklyhihlch*q*lvlkiiklnfsi*ivip
lfil*sliqiqshl*qsihldfilqvvlmipllgfgisl


Frame C:
---viic*wycftleynn**tiiyspt*qwfiiysnlysitcn*k**ktfnfl**wfnii
i*frnstnyitiktr************sn**ncitsiyaisndwf*rs*n*ifrsk**yr
csfydrsfkfnlifnnrsiwtlycklcs*fly*vlgyl


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHK181 (VHK181Q) /CSM/VH/VHK1-D/VHK181Q.Seq.d/ 446 e-124
SSL185 (SSL185Q) /CSM/SS/SSL1-D/SSL185Q.Seq.d/ 40 0.030
SSH502 (SSH502Q) /CSM/SS/SSH5-A/SSH502Q.Seq.d/ 40 0.030
CFJ227 (CFJ227Q) /CSM/CF/CFJ2-B/CFJ227Q.Seq.d/ 40 0.030
SSM481 (SSM481Q) /CSM/SS/SSM4-D/SSM481Q.Seq.d/ 38 0.12
VSC856 (VSC856Q) /CSM/VS/VSC8-C/VSC856Q.Seq.d/ 36 0.47
SHH439 (SHH439Q) /CSM/SH/SHH4-B/SHH439Q.Seq.d/ 36 0.47
SHJ874 (SHJ874Q) /CSM/SH/SHJ8-D/SHJ874Q.Seq.d/ 34 1.9
VSI181 (VSI181Q) /CSM/VS/VSI1-D/VSI181Q.Seq.d/ 34 1.9

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 32 0.008 11
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 34 0.009 10
AP004173|AP004173.1 Mycoplasma penetrans genomic DNA, complete sequence, section 4/5. 38 0.035 9
AE014822|AE014822.1 Plasmodium falciparum 3D7 chromosome 14 section 7 of 13 of the complete sequence. 30 0.038 9
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 32 0.10 12
AC115612|AC115612.2 Dictyostelium discoideum chromosome 2 map 6245135-6357017 strain AX4, complete sequence. 34 0.14 8
AC144691|AC144691.3 Didelphis virginiana clone LB3-241H11, complete sequence. 32 0.15 7
AP006628|AP006628.1 Onion yellows phytoplasma OY-M DNA, complete genome. 32 0.22 14
AL844505|AL844505.1 Plasmodium falciparum chromosome 6. 42 0.33 15
AC009990|AC009990.9 Homo sapiens chromosome 05 clone RP11-94N1, complete sequence. 46 0.46 1
dna update 2004. 3.12
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54J37) RecName: Full=Striatin-3 homolog; 283 2e-75
(O55106) RecName: Full=Striatin; &AJ223777_1(AJ223777|pid:none)... 118 6e-26
(P70483) RecName: Full=Striatin; &X99326_1(X99326|pid:none) 118 8e-26
BC106878_1(BC106878|pid:none) Homo sapiens striatin, calmodulin ... 116 2e-25
AC007382_1(AC007382|pid:none) Homo sapiens BAC clone RP11-288C18... 116 2e-25
EU315008_1(EU315008|pid:none) Carassius auratus PR110/striatin m... 116 2e-25
BC129211_1(BC129211|pid:none) Danio rerio zgc:158357, mRNA (cDNA... 116 3e-25
EU315009_1(EU315009|pid:none) Carassius auratus S/G2 nuclear aut... 115 4e-25
BC081006_1(BC081006|pid:none) Xenopus laevis MGC81438 protein, m... 115 5e-25
BC168557_1(BC168557|pid:none) Xenopus tropicalis cDNA clone MGC:... 115 7e-25
protein update 2009. 7.15
PSORT

psg: 0.75 gvh: 0.42 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.27 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
20.0 %: nuclear
12.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: vesicles of secretory system
4.0 %: peroxisomal
4.0 %: endoplasmic reticulum

>> prediction for VHK181 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VHK181Z
3' end seq.
>VHK181Z.Seq
NNNNNNNNNNTTTGTCATCATCTGCTGATGGTACTGTTTCACTTTGGAATACAACAACTA
GTGAACAATTATATACTCTCCAACATAGCAATGGTTTATCATATATTCCAACCTCTATAG
CATTACCTGCAACTGAAAATAATAGAAAACTTTTAACTTCTTATAATGATGGTTCAATAT
TATTATTTGATTTAGAAACTCAACAAATTATATCACAATTAAAACAAGGTAGTAGTAATA
ATAATAATAATAATAATAATAATAGTCAAATTAATAAAATTGTATCACATCCATTTATGC
CATTAGCAATGACTGGTTCTGAAGATCATAAAATTGAATTTTTCGATCTAAATAGTAATA
CCGTTGTTCATTCTATGATCGCTCATTCAAATTCAATCTCATCTTTAACAATCGATCCAT
CTGGACTTTATATTGCAAGTTGTGCTCATGATTCCTCTATTAGGTTTTGGGATATCTCTT
Length of 3' end seq. 480
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -