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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHJ883
Library VH
(Link to library)
Clone ID VHJ883
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U14834-1
Original site URL
Representative seq. ID VHJ883P
(Link to Original site)
Representative DNA sequence 
>VHJ883 (VHJ883Q) /CSM/VH/VHJ8-D/VHJ883Q.Seq.d/
CAATTGGAACTATTCATGTCCTTAAATCTGATTTTTTACCAATGTTAAGATAAAAATAAA
AATAAAAATATAAAGTAAAACAATTTTTATATGTAAAAAAAAAAXXXXXXXXXXATGAAA
AGAAACCACCAATTGGAACTATTCATGTCCTTAAATCTGATTTTTTACCAATGTTAAGNA
TAAAAATAAAAATAAAAATATAAAGTAAAACAATTTTTATA
sequence update 2002.10.25
Translated Amino Acid sequence 
igtihvlksdflpmlr*k*k*KYKVKQFLYVKKK---

---EKKPPIGTIHVLKSDFLPMLXIKIKIKI*sktifi
Translated Amino Acid sequence (All Frames) 
Frame A:
qlelfmslnlifyqc*dknknknik*nnfym*kk---

---mkrnhqlelfmslnlifyqc*x*k*k*kykvkqfl

Frame B:
nwnyscp*i*fftnvkikikiki*sktifickkk---

---*kettnwnyscp*i*fftnvkxknknknik*nnfy

Frame C:
igtihvlksdflpmlr*k*k*KYKVKQFLYVKKK---

---EKKPPIGTIHVLKSDFLPMLXIKIKIKI*sktifi
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHJ883 (VHJ883Q) /CSM/VH/VHJ8-D/VHJ883Q.Seq.d/                        127   7e-29
VSD558 (VSD558Q) /CSM/VS/VSD5-C/VSD558Q.Seq.d/                         34   0.82
VHO303 (VHO303Q) /CSM/VH/VHO3-A/VHO303Q.Seq.d/                         34   0.82
SSL159 (SSL159Q) /CSM/SS/SSL1-C/SSL159Q.Seq.d/                         34   0.82
SSK746 (SSK746Q) /CSM/SS/SSK7-B/SSK746Q.Seq.d/                         34   0.82
SSD305 (SSD305Q) /CSM/SS/SSD3-A/SSD305Q.Seq.d/                         34   0.82
SSC740 (SSC740Q) /CSM/SS/SSC7-B/SSC740Q.Seq.d/                         34   0.82
SSC225 (SSC225Q) /CSM/SS/SSC2-B/SSC225Q.Seq.d/                         34   0.82
SSB878 (SSB878Q) /CSM/SS/SSB8-D/SSB878Q.Seq.d/                         34   0.82
SHI793 (SHI793Q) /CSM/SH/SHI7-D/SHI793Q.Seq.d/                         34   0.82
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC117072) Dictyostelium discoideum chromosome 2 map 3879572...   127   2e-25  1
(BJ442734) Dictyostelium discoideum cDNA clone:ddv50f22, 3' ...   127   2e-25  1
(BJ423915) Dictyostelium discoideum cDNA clone:ddv50f22, 5' ...    98   2e-16  1
(BP018838) Ciona intestinalis cDNA, clone:ciad08g04, 5' end,...    34   0.20   2
(AV843492) Ciona intestinalis cDNA, clone:rciad08g04, 3' end...    34   0.31   2
(AK112902) Ciona intestinalis cDNA, clone:ciad008g04, full i...    34   0.31   2
(DH096651) Oryzias latipes Fosmid clone:GOLWFno183_a16, reve...    32   2.6    2
(DK160338) Oryzias latipes cDNA, clone: olec5f24, 3' end.          32   2.8    2
(AQ915780) nbeb0060C10r CUGI Rice BAC Library (EcoRI) Oryza ...    32   2.9    2
(DK132194) Oryzias latipes cDNA, clone: oleb57b02, 3' end.         32   3.0    2
dna update 2008.11.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117072_7(AC117072|pid:none) Dictyostelium discoideum chromosom...    45   8e-04
protein update 2009. 3.12
PSORT 

 psg: 0.33  gvh: 0.23  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 44.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for VHJ883 is cyt
5' end seq. ID VHJ883F
5' end seq. 
>VHJ883F.Seq
CAATTGGAACTATTCATGTCCTTAAATCTGATTTTTTACCAATGTTAAGATAAAAATAAA
AATAAAAATATAAAGTAAAACAATTTTTATATGTAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 114
3' end seq. ID VHJ883Z
3' end seq. 
>VHJ883Z.Seq
NNNNNNNNNNATGAAAAGAAACCACCAATTGGAACTATTCATGTCCTTAAATCTGATTTT
TTACCAATGTTAAGNATAAAAATAAAAATAAAAATATAAAGTAAAACAATTTTTATA
Length of 3' end seq. 117
Connected seq. ID VHJ883P
Connected seq. 
>VHJ883P.Seq
CAATTGGAACTATTCATGTCCTTAAATCTGATTTTTTACCAATGTTAAGATAAAAATAAA
AATAAAAATATAAAGTAAAACAATTTTTATATGTAAAAAAAAAA----------ATGAAA
AGAAACCACCAATTGGAACTATTCATGTCCTTAAATCTGATTTTTTACCAATGTTAAGNA
TAAAAATAAAAATAAAAATATAAAGTAAAACAATTTTTATA
Length of connected seq. 211
Full length Seq ID -
Full length Seq. -
Length of full length seq. -