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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHJ801
Library VH
(Link to library)
Clone ID VHJ801
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11369-1
Original site URL
Representative seq. ID VHJ801P
(Link to Original site)
Representative DNA sequence 
>VHJ801 (VHJ801Q) /CSM/VH/VHJ8-A/VHJ801Q.Seq.d/
AATTTTATTTATTATAATAATTTTTTAATTGCTTTTTAATTGTTTATTGTTTATTTTTTA
TTTTTTAATTAATTATTTCATAATTTCATAATTTTTTAATTTTTTTAAAAAAAAAAAGCA
AAAAGCAAAAAAGCAAAGATTTGGTATAATAAAAAAAAAANGAGAAAAAGAACCNAAAAA
AAAAXXXXXXXXXXGAATATTCAAGCAATTGTTTCAATATGAAACCAGAGTTTGCCACTG
AGCGTCTCATTGAAAAGAATCTCAATGAAGAGGATGCAATGTATAAATCTGGTCTCTTTA
AATTGGTTCAAAATGTAAGTCTCTTGGCCGATGCAGAGGATGAAAATCGTTTCTATCCAA
GAATTGAAATCACCAAAACTAGCAATTTCAATGAACTCTCTGATGATATCAAGACCATTC
TCCATCGTTTATACATCTCTTACTACTATGAAAGACAAGAGGAACTTTGGGCACAAATTG
CTCTTCAACGTTTACCTTTGATTAAAGGTTGCACAAAGATGTTGGTTTGTGGTGAAGATT
TAGGTATGGTTCCAAAATGTGTTGAGCCTGTACTCAACGATTTAGGTATCCTTGGTTTAA
GAATTCAACGTATGCCTTCCGATTCAAATAAAGATTTGNCTNCANCCNAATGAATNNTCN
TATNTC
sequence update 2002.10.25
Translated Amino Acid sequence 
ilfiiiif*llfncllfifyflinyfiis*FFNFFKKKKQKAKKQRFGIIKKKXEKEPKK
K---

---EYSSNCFNMKPEFATERLIEKNLNEEDAMYKSGLFKLVQNVSLLADAEDENRFYPRI
EITKTSNFNELSDDIKTILHRLYISYYYERQEELWAQIALQRLPLIKGCTKMLVCGEDLG
MVPKCVEPVLNDLGILGLRIQRMPSDSNKDLXXXX*xxxx
Translated Amino Acid sequence (All Frames) 
Frame A:
nfiyynnfliaf*lfivyflffn*lfhnfiif*ff*kkkakskkakiwynkkkxrkrtxk
k---

---EYSSNCFNMKPEFATERLIEKNLNEEDAMYKSGLFKLVQNVSLLADAEDENRFYPRI
EITKTSNFNELSDDIKTILHRLYISYYYERQEELWAQIALQRLPLIKGCTKMLVCGEDLG
MVPKCVEPVLNDLGILGLRIQRMPSDSNKDLXXXX*xxxx

Frame B:
ilfiiiif*llfncllfifyflinyfiis*FFNFFKKKKQKAKKQRFGIIKKKXEKEPKK
K---

---niqaivsi*nqslplsvslkrismkrmqcinlvslnwfkm*vswpmqrmkivsiqel
kspklaismnslmisrpfsivytslttmkdkrnfghkllfnvyl*lkvaqrcwfvvki*v
wfqnvlslysti*vslv*efnvclpiqikixlxpnexsyx

Frame C:
fyll**ffncflivyclffif*liis*fhnfliflkkkskkqkskdlv**kkxekknxkk
---

---ifkqlfqyetrvch*ash*kesq*rgcnv*iwsl*igskckslgrcrg*ksflskn*
nhqn*qfq*tl**yqdhspsfihllll*ktrgtlgtncsstftfd*rlhkdvglw*rfry
gskmc*actqrfrypwfknstyafrfk*rfxxxxmnxxx
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHJ801 (VHJ801Q) /CSM/VH/VHJ8-A/VHJ801Q.Seq.d/                        890   0.0
VHA888 (VHA888Q) /CSM/VH/VHA8-D/VHA888Q.Seq.d/                        622   e-177
VHP384 (VHP384Q) /CSM/VH/VHP3-D/VHP384Q.Seq.d/                        618   e-176
AHP368 (AHP368Q) /CSM/AH/AHP3-C/AHP368Q.Seq.d/                        569   e-161
AHL695 (AHL695Q) /CSM/AH/AHL6-D/AHL695Q.Seq.d/                        569   e-161
VHJ887 (VHJ887Q) /CSM/VH/VHJ8-D/VHJ887Q.Seq.d/                        567   e-161
VHP601 (VHP601Q) /CSM/VH/VHP6-A/VHP601Q.Seq.d/                        561   e-159
VHK286 (VHK286Q) /CSM/VH/VHK2-D/VHK286Q.Seq.d/                        559   e-158
VHM715 (VHM715Q) /CSM/VH/VHM7-A/VHM715Q.Seq.d/                        557   e-158
VHK484 (VHK484Q) /CSM/VH/VHK4-D/VHK484Q.Seq.d/                        551   e-156
own update 2003. 1. 1
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ442477) Dictyostelium discoideum cDNA clone:ddv50b02, 3' ...   888   0.0    1
(BJ437026) Dictyostelium discoideum cDNA clone:ddv32p22, 3' ...   622   e-174  1
(BJ446159) Dictyostelium discoideum cDNA clone:ddv61h21, 3' ...   618   e-173  1
(BJ356834) Dictyostelium discoideum cDNA clone:dda61h17, 3' ...   569   e-158  1
(BJ354839) Dictyostelium discoideum cDNA clone:dda54m24, 3' ...   569   e-158  1
(BJ442776) Dictyostelium discoideum cDNA clone:ddv50n22, 3' ...   567   e-157  1
(BJ446199) Dictyostelium discoideum cDNA clone:ddv62a02, 3' ...   561   e-155  1
(BJ443093) Dictyostelium discoideum cDNA clone:ddv51k22, 3' ...   559   e-155  1
(BJ444376) Dictyostelium discoideum cDNA clone:ddv56n03, 3' ...   557   e-154  1
(BJ443080) Dictyostelium discoideum cDNA clone:ddv51h22, 3' ...   551   e-152  1
dna update 2008.11.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT055804_1(BT055804|pid:none) Zea mays full-length cDNA clone ZM...   147   4e-34
FJ664262_1(FJ664262|pid:none) Annona cherimola disproportionatin...   144   2e-33
AY081315_1(AY081315|pid:none) Arabidopsis thaliana 4-alpha-gluca...   137   3e-31
CP001577_181(CP001577|pid:none) Micromonas sp. RCC299 chromosome...   135   1e-30
AY510449_1(AY510449|pid:none) Solanum tuberosum 4-alpha-glucanot...   132   1e-29
CR626927_3520(CR626927|pid:none) Bacteroides fragilis NCTC 9343,...   125   1e-27
AP006841_3821(AP006841|pid:none) Bacteroides fragilis YCH46 DNA,...   125   1e-27
AE005176_696(AE005176|pid:none) Lactococcus lactis subsp. lactis...   118   1e-25
CP000425_648(CP000425|pid:none) Lactococcus lactis subsp. cremor...   115   9e-25
CP000591_215(CP000591|pid:none) Ostreococcus lucimarinus CCE9901...   114   3e-24
protein update 2009. 7.14
PSORT 

 psg: 0.50  gvh: 0.07  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.04
 nuc: 0.25  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: nuclear
	 16.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for VHJ801 is nuc
5' end seq. ID VHJ801F
5' end seq. 
>VHJ801F.Seq
AATTTTATTTATTATAATAATTTTTTAATTGCTTTTTAATTGTTTATTGTTTATTTTTTA
TTTTTTAATTAATTATTTCATAATTTCATAATTTTTTAATTTTTTTAAAAAAAAAAAGCA
AAAAGCAAAAAAGCAAAGATTTGGTATAATAAAAAAAAAANGAGAAAAAGAACCNAAAAA
AAAANNNNNNNNNN
Length of 5' end seq. 194
3' end seq. ID VHJ801Z
3' end seq. 
>VHJ801Z.Seq
NNNNNNNNNNGAATATTCAAGCAATTGTTTCAATATGAAACCAGAGTTTGCCACTGAGCG
TCTCATTGAAAAGAATCTCAATGAAGAGGATGCAATGTATAAATCTGGTCTCTTTAAATT
GGTTCAAAATGTAAGTCTCTTGGCCGATGCAGAGGATGAAAATCGTTTCTATCCAAGAAT
TGAAATCACCAAAACTAGCAATTTCAATGAACTCTCTGATGATATCAAGACCATTCTCCA
TCGTTTATACATCTCTTACTACTATGAAAGACAAGAGGAACTTTGGGCACAAATTGCTCT
TCAACGTTTACCTTTGATTAAAGGTTGCACAAAGATGTTGGTTTGTGGTGAAGATTTAGG
TATGGTTCCAAAATGTGTTGAGCCTGTACTCAACGATTTAGGTATCCTTGGTTTAAGAAT
TCAACGTATGCCTTCCGATTCAAATAAAGATTTGNCTNCANCCNAATGAATNNTCNTATN
TC
Length of 3' end seq. 482
Connected seq. ID VHJ801P
Connected seq. 
>VHJ801P.Seq
AATTTTATTTATTATAATAATTTTTTAATTGCTTTTTAATTGTTTATTGTTTATTTTTTA
TTTTTTAATTAATTATTTCATAATTTCATAATTTTTTAATTTTTTTAAAAAAAAAAAGCA
AAAAGCAAAAAAGCAAAGATTTGGTATAATAAAAAAAAAANGAGAAAAAGAACCNAAAAA
AAAA----------GAATATTCAAGCAATTGTTTCAATATGAAACCAGAGTTTGCCACTG
AGCGTCTCATTGAAAAGAATCTCAATGAAGAGGATGCAATGTATAAATCTGGTCTCTTTA
AATTGGTTCAAAATGTAAGTCTCTTGGCCGATGCAGAGGATGAAAATCGTTTCTATCCAA
GAATTGAAATCACCAAAACTAGCAATTTCAATGAACTCTCTGATGATATCAAGACCATTC
TCCATCGTTTATACATCTCTTACTACTATGAAAGACAAGAGGAACTTTGGGCACAAATTG
CTCTTCAACGTTTACCTTTGATTAAAGGTTGCACAAAGATGTTGGTTTGTGGTGAAGATT
TAGGTATGGTTCCAAAATGTGTTGAGCCTGTACTCAACGATTTAGGTATCCTTGGTTTAA
GAATTCAACGTATGCCTTCCGATTCAAATAAAGATTTGNCTNCANCCNAATGAATNNTCN
TATNTC
Length of connected seq. 656
Full length Seq ID -
Full length Seq. -
Length of full length seq. -