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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHJ777
Library VH
(Link to library)
Clone ID VHJ777
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11862-1
Original site URL
Representative seq. ID VHJ777P
(Link to Original site)
Representative DNA sequence 
>VHJ777 (VHJ777Q) /CSM/VH/VHJ7-D/VHJ777Q.Seq.d/
GGGAATTCCTCGGGNCACTGNTGGGCCTACTGGGACATTAAAAATTTCATATATTTTTTT
AATTTANCAATAAATTANTAAATCCACATTAATAAAAAATTAAAAAATTAGGAAACAATA
AATTAATTAATATAAATTTANTTTAATTAAATCTTGATAAAAATAATTTTAATTTTAAAA
AATAATATAAAAAATATATAAAAAATAAAAATAAGGAAAATAATAANAAAAAATGTCAAC
TAANCTATTTGTTGGACAAATTCCAAAATCATTTAATGAAGAAGAGATTAAAAATTTATT
TACCAATATAGCTAATATTGAATCAGTATCATTGATAAAGAATAAAACTNCCAATGAGCC
ACAAGGATGTGCATTCGTATCANTACCATCACGTGAGGAAGCXXXXXXXXXXCCCCNAAA
AAAAAAAAAAAAAAAAAAAAAAAAGAAGNAAAAAAAAGTGGTGTGGTGTGCGTGTATAAA
AAAAGATTGTTTTGATGTTAGTGGTAGTTAGTATTTATAGTTTTTTTNT
sequence update 2002.10.25
Translated Amino Acid sequence 
giprxtxgptgtlkisyiflixq*ixkstlikn*kirkq*in*ykfxliks**k*f*f*k
ii*kiykk*k*gk**XKMSTXLFVGQIPKSFNEEEIKNLFTNIANIESVSLIKNKTXNEP
QGCAFVSXPSREE---

---PXKKKKKKKKKKXKKVVWCACIKKDCFDVSGS*yl*ffx
Translated Amino Acid sequence (All Frames) 
Frame A:
gnssghxwaywdiknfiyffnlxinx*ihinkklkn*etin*li*ixfn*ilikiililk
nnikni*kikirkiixknvn*xicwtnskii**rrd*kfiyqys*y*isiidke*nxq*a
trmcirixtit*gs---

---PXKKKKKKKKKKXKKVVWCACIKKDCFDVSGS*yl*ffx

Frame B:
giprxtxgptgtlkisyiflixq*ixkstlikn*kirkq*in*ykfxliks**k*f*f*k
ii*kiykk*k*gk**XKMSTXLFVGQIPKSFNEEEIKNLFTNIANIESVSLIKNKTXNEP
QGCAFVSXPSREE---

---pxkkkkkkkkrxkkkwcgvrv*kkivlmlvvvsiysff

Frame C:
eflgxlxgllgh*kfhiff*fxnklxnph**kikklgnnklininlx*lnldknnfnfkk
*ykkyiknknkennxkkcqlxylldkfqnhlmkkrlkiylpi*lilnqyh**riklpmsh
kdvhsyxyhhvrk---

---pkkkkkkkkkexkksgvvcvykkrlf*c*w*lvfivfx
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHJ777 (VHJ777Q) /CSM/VH/VHJ7-D/VHJ777Q.Seq.d/                        317   9e-86
VHG121 (VHG121Q) /CSM/VH/VHG1-A/VHG121Q.Seq.d/                        317   9e-86
VHD283 (VHD283Q) /CSM/VH/VHD2-D/VHD283Q.Seq.d/                        317   9e-86
CHF369 (CHF369Q) /CSM/CH/CHF3-C/CHF369Q.Seq.d/                        317   9e-86
AFO804 (AFO804Q) /CSM/AF/AFO8-A/AFO804Q.Seq.d/                        317   9e-86
CHN117 (CHN117Q) /CSM/CH/CHN1-A/CHN117Q.Seq.d/                        305   4e-82
VHP330 (VHP330Q) /CSM/VH/VHP3-B/VHP330Q.Seq.d/                         36   0.52
VHP318 (VHP318Q) /CSM/VH/VHP3-A/VHP318Q.Seq.d/                         36   0.52
VHJ794 (VHJ794Q) /CSM/VH/VHJ7-D/VHJ794Q.Seq.d/                         36   0.52
SSG445 (SSG445Q) /CSM/SS/SSG4-B/SSG445Q.Seq.d/                         36   0.52
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ423929) Dictyostelium discoideum cDNA clone:ddv50j19, 5' ...   315   e-102  2
(BJ364697) Dictyostelium discoideum cDNA clone:ddc32j17, 5' ...   315   2e-85  2
(BJ421569) Dictyostelium discoideum cDNA clone:ddv43i05, 5' ...   315   2e-85  2
(BJ328918) Dictyostelium discoideum cDNA clone:dda30h02, 5' ...   315   2e-85  2
(BJ368759) Dictyostelium discoideum cDNA clone:ddc48a05, 5' ...   303   5e-82  2
(BJ419969) Dictyostelium discoideum cDNA clone:ddv37e22, 5' ...   315   9e-82  1
(BJ442752) Dictyostelium discoideum cDNA clone:ddv50j19, 3' ...    72   2e-08  1
(BJ384026) Dictyostelium discoideum cDNA clone:ddc48a05, 3' ...    64   5e-06  1
(ER514052) 1093015481796 Global-Ocean-Sampling_GS-35-01-01-1...    46   1.3    1
(EJ386296) 1092963816886 Global-Ocean-Sampling_GS-28-01-01-1...    46   1.3    1
dna update 2008.11.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK073796_1(AK073796|pid:none) Oryza sativa Japonica Group cDNA c...    57   2e-07
AP008211_995(AP008211|pid:none) Oryza sativa (japonica cultivar-...    57   2e-07
AC005275_3(AC005275|pid:none) Arabidopsis thaliana BAC F4C21 fro...    56   5e-07
AY065261_1(AY065261|pid:none) Arabidopsis thaliana putative ribo...    56   5e-07
AK316961_1(AK316961|pid:none) Arabidopsis thaliana AT4G03110 mRN...    56   5e-07
AK099501_1(AK099501|pid:none) Oryza sativa Japonica Group cDNA c...    56   6e-07
AC002560_8(AC002560|pid:none) Genomic sequence for Arabidopsis t...    55   1e-06
AK117246_1(AK117246|pid:none) Arabidopsis thaliana At1g03460 mRN...    55   1e-06
T00912(T00912)ribonucleoprotein homolog F21B7.26 - Arabidopsis t...    55   1e-06
AM436394_3(AM436394|pid:none) Vitis vinifera contig VV78X113742....    55   1e-06
protein update 2009. 7.14
PSORT 

 psg: 0.91  gvh: 0.32  alm: 0.47  top: 0.33  tms: 0.00  mit: 0.30  mip: 0.00
 nuc: 0.46  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 80.0 %: nuclear
	  8.0 %: plasma membrane
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system
	  4.0 %: cytoplasmic

>> prediction for VHJ777 is nuc
5' end seq. ID VHJ777F
5' end seq. 
>VHJ777F.Seq
GGGAATTCCTCGGGNCACTGNTGGGCCTACTGGGACATTAAAAATTTCATATATTTTTTT
AATTTANCAATAAATTANTAAATCCACATTAATAAAAAATTAAAAAATTAGGAAACAATA
AATTAATTAATATAAATTTANTTTAATTAAATCTTGATAAAAATAATTTTAATTTTAAAA
AATAATATAAAAAATATATAAAAAATAAAAATAAGGAAAATAATAANAAAAAATGTCAAC
TAANCTATTTGTTGGACAAATTCCAAAATCATTTAATGAAGAAGAGATTAAAAATTTATT
TACCAATATAGCTAATATTGAATCAGTATCATTGATAAAGAATAAAACTNCCAATGAGCC
ACAAGGATGTGCATTCGTATCANTACCATCACGTGAGGAAGCNNNNNNNNNN
Length of 5' end seq. 412
3' end seq. ID VHJ777Z
3' end seq. 
>VHJ777Z.Seq
NNNNNNNNNNCCCCNAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAGNAAAAAAAAGTGGT
GTGGTGTGCGTGTATAAAAAAAGATTGTTTTGATGTTAGTGGTAGTTAGTATTTATAGTT
TTTTTNT
Length of 3' end seq. 127
Connected seq. ID VHJ777P
Connected seq. 
>VHJ777P.Seq
GGGAATTCCTCGGGNCACTGNTGGGCCTACTGGGACATTAAAAATTTCATATATTTTTTT
AATTTANCAATAAATTANTAAATCCACATTAATAAAAAATTAAAAAATTAGGAAACAATA
AATTAATTAATATAAATTTANTTTAATTAAATCTTGATAAAAATAATTTTAATTTTAAAA
AATAATATAAAAAATATATAAAAAATAAAAATAAGGAAAATAATAANAAAAAATGTCAAC
TAANCTATTTGTTGGACAAATTCCAAAATCATTTAATGAAGAAGAGATTAAAAATTTATT
TACCAATATAGCTAATATTGAATCAGTATCATTGATAAAGAATAAAACTNCCAATGAGCC
ACAAGGATGTGCATTCGTATCANTACCATCACGTGAGGAAGC----------CCCCNAAA
AAAAAAAAAAAAAAAAAAAAAAAAGAAGNAAAAAAAAGTGGTGTGGTGTGCGTGTATAAA
AAAAGATTGTTTTGATGTTAGTGGTAGTTAGTATTTATAGTTTTTTTNT
Length of connected seq. 519
Full length Seq ID -
Full length Seq. -
Length of full length seq. -