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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHJ763
Library VH
(Link to library)
Clone ID VHJ763
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11335-1
Original site URL
Representative seq. ID VHJ763P
(Link to Original site)
Representative DNA sequence 
>VHJ763 (VHJ763Q) /CSM/VH/VHJ7-C/VHJ763Q.Seq.d/
TCAATGAAAAACTTCAAGAATATGAAAAGACTAAATTAATTAATCAATATGAAAAGATTG
ATTTTTTAAGATTGGTCGAGAATGGATTAAGTGAAAACAATTTACAGAGAATGAAACAAA
GATTTGGAAGTAATGAAATTAATTTTCCAGTTAAAAATATACCAAGATTATTAATGGAAG
AAGTATTACATCCATTCTTTATTTTCCAAATTTATAGTGTTTGTTTATGGATAGCAGAAG
AGTATTATTATTATGCAGGTGCAATCTTTATAATTGCAACTGTAAGTGCAGTTTTAAGTT
TAAGAGAGATTCGTGGAAATTTATTATCATTACAAAAGATAGCCCATTTTGTATGTCCAG
TTAGAGTTGTTAGAAATAATGGTAGAATTGAAACTATTCCCTCAACAGATTTGGCACCTG
GCGATATTATCGAGTTAAAACAAGATTTCATTATGCCATGTGATGCTATCTTATTATCTG
GTCAAGCAATTCTTAATGAATCAATGTTAACAGGTGAATCAATTCCAGTAAATAAATATA
GTATCTTAAGTGATGAAGAGATTAAATCATTTAAACAACGTAATAXXXXXXXXXXTTTAC
CAAGATCTCATAGTCATCTTTCCATTGGTAATCTTTTTAGGTATGACTGAACCCATGTGA
AAAACTTTCTGTCAAACGTCCATCTGGGAGATTGATAAGTTTAAATATGATTGGTTCACT
ATTATCTCATATCACTGTATGCTTTGTATTCTTACTTGTTGTTTTCCATTTGGTTCAAAG
CAAATCTTGGTTTGACGAGCCCTTACTCGATCCAGATAATATTTTTAATTATATCACTAC
CTCTCTTTTCATTTTTGGATGCTTCCAATATTCAATTATGTTATTTGTATTTTCATTTGG
TAAAAAAAAACCATTTTTAAAAGCAATTTATACAAATAGATATTTATTTTTAGTTTACAT
TGTTACATTAATTGCAAATTTAATAATACTATTTGGTGGCTTTGAGAAACTTTATAATTT
CTTACAATTAAGAGTTATCCCAGTTAGTTGGAGAAGTACAATGTTTGGTATGATAATAGG
AAATTTAGTTGCCAATTGTCTTATTGAGCTTTCCTTCTATTTCTATAAATCTAGATCAAA
GAAGAAAAAGATTTTAAATATAAGAATTATTTTCTCAAAGAAAAACAATGAATTACCAAA
AGACCCAAGAGTCTTTAATACTAATTCAGTTTCAATTCCAATTTATCAAGATTATT
sequence update 2002.10.25
Translated Amino Acid sequence 
NEKLQEYEKTKLINQYEKIDFLRLVENGLSENNLQRMKQRFGSNEINFPVKNIPRLLMEE
VLHPFFIFQIYSVCLWIAEEYYYYAGAIFIIATVSAVLSLREIRGNLLSLQKIAHFVCPV
RVVRNNGRIETIPSTDLAPGDIIELKQDFIMPCDAILLSGQAILNESMLTGESIPVNKYS
ILSDEEIKSFKQRN---

---YQDLIVIFPLVIFLGMTEPM*ktfcqtsiweidkfkydwftiisyhcmlciltccfp
fgskqilv*raltrsr*yf*lyhylsfhfwmlpifnyvicifiw*kktifksnlyk*ifi
fslhcyinckfnntiwwl*etl*fltiksyps*lekynvwydnrkfscqlsy*afllfl*
i*ikeekdfkyknyflkekq*itkrpksl*y*fsfnsnlsrl
Translated Amino Acid sequence (All Frames) 
Frame A:
smknfknmkrln*linmkrlif*dwsrmd*vktiyre*nkdlevmklifqlkiyqdy*wk
kyyihslfskfivfvyg*qksiiimqvqsl*lql*vqf*v*erfveiyyhykr*pilyvq
lelleimvelklfpqqiwhlailss*nkislchvmlsyylvkqflmnqc*qvnqfq*ini
vs*vmkrlnhlnnvi---

---ftkis*ssfhw*sf*v*lnpceklsvkrpsgrlislnmigsllshitvcfvfllvvf
hlvqskswfdeplldpdnifnyittslfifgcfqysimlfvfsfgkkkpflkaiytnryl
flvyivtlianliilfggfeklynflqlrvipvswrstmfgmiignlvanclielsfyfy
ksrskkkkilniriifskknnelpkdprvfntnsvsipiyqdy

Frame B:
q*ktsri*kd*in*si*kd*ffkigrewik*kqftenetkiwk**n*fss*kytkiingr
sitsilyfpnl*clfmdsrrvlllcrcnlyncnckcsfkfkrdswkfiiitkdspfcmss
*sc*k*w*n*nyslnrfgtwryyrvktrfhyam*cyliiwssns**invnr*inssk*i*
ylk**rd*ii*tt*---

---lprshshlsignlfryd*thvknflsnvhlgd**v*i*lvhyylislyalysyllfs
iwfkanlgltspysiqiifliislplfsfldasniqlcylyfhlvkknhf*kqfiqidiy
f*ftllh*lqi**yylvalrnfiisyn*elsqlvgevqclv***ei*lpivllsfpsisi
nldqrrkrf*i*elfsqrktmnyqktqesliliqfqfqfikii

Frame C:
NEKLQEYEKTKLINQYEKIDFLRLVENGLSENNLQRMKQRFGSNEINFPVKNIPRLLMEE
VLHPFFIFQIYSVCLWIAEEYYYYAGAIFIIATVSAVLSLREIRGNLLSLQKIAHFVCPV
RVVRNNGRIETIPSTDLAPGDIIELKQDFIMPCDAILLSGQAILNESMLTGESIPVNKYS
ILSDEEIKSFKQRN---

---YQDLIVIFPLVIFLGMTEPM*ktfcqtsiweidkfkydwftiisyhcmlciltccfp
fgskqilv*raltrsr*yf*lyhylsfhfwmlpifnyvicifiw*kktifksnlyk*ifi
fslhcyinckfnntiwwl*etl*fltiksyps*lekynvwydnrkfscqlsy*afllfl*
i*ikeekdfkyknyflkekq*itkrpksl*y*fsfnsnlsrl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHJ763 (VHJ763Q) /CSM/VH/VHJ7-C/VHJ763Q.Seq.d/                       2377   0.0
VHJ681 (VHJ681Q) /CSM/VH/VHJ6-D/VHJ681Q.Seq.d/                       1231   0.0
VHA345 (VHA345Q) /CSM/VH/VHA3-B/VHA345Q.Seq.d/                       1231   0.0
AHQ147 (AHQ147Q) /CSM/AH/AHQ1-B/AHQ147Q.Seq.d/                       1231   0.0
AHF681 (AHF681Q) /CSM/AH/AHF6-D/AHF681Q.Seq.d/                       1231   0.0
AHQ724 (AHQ724Q) /CSM/AH/AHQ7-A/AHQ724Q.Seq.d/                       1219   0.0
VFE491 (VFE491Q) /CSM/VF/VFE4-D/VFE491Q.Seq.d/                       1217   0.0
VHJ460 (VHJ460Q) /CSM/VH/VHJ4-C/VHJ460Q.Seq.d/                       1205   0.0
AHJ692 (AHJ692Q) /CSM/AH/AHJ6-D/AHJ692Q.Seq.d/                       1142   0.0
VFE493 (VFE493Q) /CSM/VF/VFE4-D/VFE493Q.Seq.d/                       1023   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ423876) Dictyostelium discoideum cDNA clone:ddv50n15, 5' ...  1160   0.0    1
(BJ442706) Dictyostelium discoideum cDNA clone:ddv50a22, 3' ...   686   0.0    3
(BJ442690) Dictyostelium discoideum cDNA clone:ddv50n15, 3' ...   686   0.0    2
(BJ436503) Dictyostelium discoideum cDNA clone:ddv31j11, 3' ...   686   0.0    3
(BJ431084) Dictyostelium discoideum cDNA clone:ddv9f24, 3' e...   686   0.0    3
(BJ409555) Dictyostelium discoideum cDNA clone:dds42c13, 3' ...   686   0.0    2
(BJ357395) Dictyostelium discoideum cDNA clone:dda63m11, 3' ...   686   0.0    3
(BJ351304) Dictyostelium discoideum cDNA clone:dda42a22, 3' ...   686   0.0    3
(BJ353603) Dictyostelium discoideum cDNA clone:dda50g24, 3' ...   678   0.0    3
(BJ357639) Dictyostelium discoideum cDNA clone:dda64p05, 3' ...   674   0.0    3
dna update 2008.11.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FN392322_957(FN392322|pid:none) Pichia pastoris GS115 chromosome...   128   5e-28
CR382130_932(CR382130|pid:none) Yarrowia lipolytica strain CLIB1...   123   2e-26
FM992689_210(FM992689|pid:none) Candida dubliniensis CD36 chromo...   119   2e-25
AE016819_800(AE016819|pid:none) Ashbya gossypii (= Eremothecium ...   117   7e-25
BC128612_1(BC128612|pid:none) Danio rerio zgc:136762, mRNA (cDNA...   116   1e-24
AJ851699_1(AJ851699|pid:none) Gallus gallus mRNA for hypothetica...   114   6e-24
CR380959_492(CR380959|pid:none) Candida glabrata strain CBS138 c...   114   1e-23
CU928179_647(CU928179|pid:none) Zygosaccharomyces rouxii strain ...   111   6e-23
(Q5ZKB7) RecName: Full=Probable cation-transporting ATPase 13A4;...   109   2e-22
(Q5XF89) RecName: Full=Probable cation-transporting ATPase 13A3;...   109   2e-22
protein update 2009. 7.14
PSORT 

 psg: 0.57  gvh: 0.36  alm: 0.28  top: 0.37  tms: 0.20  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 40.0 %: endoplasmic reticulum
	 24.0 %: plasma membrane
	 16.0 %: mitochondrial
	  8.0 %: nuclear
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal
	  4.0 %: Golgi

>> prediction for VHJ763 is end
5' end seq. ID VHJ763F
5' end seq. 
>VHJ763F.Seq
TCAATGAAAAACTTCAAGAATATGAAAAGACTAAATTAATTAATCAATATGAAAAGATTG
ATTTTTTAAGATTGGTCGAGAATGGATTAAGTGAAAACAATTTACAGAGAATGAAACAAA
GATTTGGAAGTAATGAAATTAATTTTCCAGTTAAAAATATACCAAGATTATTAATGGAAG
AAGTATTACATCCATTCTTTATTTTCCAAATTTATAGTGTTTGTTTATGGATAGCAGAAG
AGTATTATTATTATGCAGGTGCAATCTTTATAATTGCAACTGTAAGTGCAGTTTTAAGTT
TAAGAGAGATTCGTGGAAATTTATTATCATTACAAAAGATAGCCCATTTTGTATGTCCAG
TTAGAGTTGTTAGAAATAATGGTAGAATTGAAACTATTCCCTCAACAGATTTGGCACCTG
GCGATATTATCGAGTTAAAACAAGATTTCATTATGCCATGTGATGCTATCTTATTATCTG
GTCAAGCAATTCTTAATGAATCAATGTTAACAGGTGAATCAATTCCAGTAAATAAATATA
GTATCTTAAGTGATGAAGAGATTAAATCATTTAAACAACGTAATANNNNNNNNNN
Length of 5' end seq. 595
3' end seq. ID VHJ763Z
3' end seq. 
>VHJ763Z.Seq
NNNNNNNNNNTTTACCAAGATCTCATAGTCATCTTTCCATTGGTAATCTTTTTAGGTATG
ACTGAACCCATGTGAAAAACTTTCTGTCAAACGTCCATCTGGGAGATTGATAAGTTTAAA
TATGATTGGTTCACTATTATCTCATATCACTGTATGCTTTGTATTCTTACTTGTTGTTTT
CCATTTGGTTCAAAGCAAATCTTGGTTTGACGAGCCCTTACTCGATCCAGATAATATTTT
TAATTATATCACTACCTCTCTTTTCATTTTTGGATGCTTCCAATATTCAATTATGTTATT
TGTATTTTCATTTGGTAAAAAAAAACCATTTTTAAAAGCAATTTATACAAATAGATATTT
ATTTTTAGTTTACATTGTTACATTAATTGCAAATTTAATAATACTATTTGGTGGCTTTGA
GAAACTTTATAATTTCTTACAATTAAGAGTTATCCCAGTTAGTTGGAGAAGTACAATGTT
TGGTATGATAATAGGAAATTTAGTTGCCAATTGTCTTATTGAGCTTTCCTTCTATTTCTA
TAAATCTAGATCAAAGAAGAAAAAGATTTTAAATATAAGAATTATTTTCTCAAAGAAAAA
CAATGAATTACCAAAAGACCCAAGAGTCTTTAATACTAATTCAGTTTCAATTCCAATTTA
TCAAGATTATT
Length of 3' end seq. 671
Connected seq. ID VHJ763P
Connected seq. 
>VHJ763P.Seq
TCAATGAAAAACTTCAAGAATATGAAAAGACTAAATTAATTAATCAATATGAAAAGATTG
ATTTTTTAAGATTGGTCGAGAATGGATTAAGTGAAAACAATTTACAGAGAATGAAACAAA
GATTTGGAAGTAATGAAATTAATTTTCCAGTTAAAAATATACCAAGATTATTAATGGAAG
AAGTATTACATCCATTCTTTATTTTCCAAATTTATAGTGTTTGTTTATGGATAGCAGAAG
AGTATTATTATTATGCAGGTGCAATCTTTATAATTGCAACTGTAAGTGCAGTTTTAAGTT
TAAGAGAGATTCGTGGAAATTTATTATCATTACAAAAGATAGCCCATTTTGTATGTCCAG
TTAGAGTTGTTAGAAATAATGGTAGAATTGAAACTATTCCCTCAACAGATTTGGCACCTG
GCGATATTATCGAGTTAAAACAAGATTTCATTATGCCATGTGATGCTATCTTATTATCTG
GTCAAGCAATTCTTAATGAATCAATGTTAACAGGTGAATCAATTCCAGTAAATAAATATA
GTATCTTAAGTGATGAAGAGATTAAATCATTTAAACAACGTAATA----------TTTAC
CAAGATCTCATAGTCATCTTTCCATTGGTAATCTTTTTAGGTATGACTGAACCCATGTGA
AAAACTTTCTGTCAAACGTCCATCTGGGAGATTGATAAGTTTAAATATGATTGGTTCACT
ATTATCTCATATCACTGTATGCTTTGTATTCTTACTTGTTGTTTTCCATTTGGTTCAAAG
CAAATCTTGGTTTGACGAGCCCTTACTCGATCCAGATAATATTTTTAATTATATCACTAC
CTCTCTTTTCATTTTTGGATGCTTCCAATATTCAATTATGTTATTTGTATTTTCATTTGG
TAAAAAAAAACCATTTTTAAAAGCAATTTATACAAATAGATATTTATTTTTAGTTTACAT
TGTTACATTAATTGCAAATTTAATAATACTATTTGGTGGCTTTGAGAAACTTTATAATTT
CTTACAATTAAGAGTTATCCCAGTTAGTTGGAGAAGTACAATGTTTGGTATGATAATAGG
AAATTTAGTTGCCAATTGTCTTATTGAGCTTTCCTTCTATTTCTATAAATCTAGATCAAA
GAAGAAAAAGATTTTAAATATAAGAATTATTTTCTCAAAGAAAAACAATGAATTACCAAA
AGACCCAAGAGTCTTTAATACTAATTCAGTTTCAATTCCAATTTATCAAGATTATT
Length of connected seq. 1246
Full length Seq ID -
Full length Seq. -
Length of full length seq. -