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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHJ756
Library VH
(Link to library)
Clone ID VHJ756
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16260-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VHJ756 (VHJ756Q) /CSM/VH/VHJ7-C/VHJ756Q.Seq.d/
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA
TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG
GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA
XXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
LSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKV
SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDF-
--
Translated Amino Acid sequence (All Frames) 
Frame A:
nsrvqkk*stkwlisqsikfvplwtvvkiseicllllmsitvkplyqil*skelvllpik
flvi*dichvvlmnksvvsplnlhlyhftskcqrktnyqlvvlhtnf*silsipqvtli-
--


Frame B:
tleckkskvqng*fhnrsnschygps*kyqkyvcycscrsr*nhfirffnpkswyycr*s
fw*yeiyvmsc**trawyhh*ificitslrnakgrqitswlyftrifnqsyrfprsr*f-
--


Frame C:
LSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKV
SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDF-
--
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHP874 (VHP874Q) /CSM/modify/h12/F/treated/VHP874Q.Seq.d/             674   0.0
VHH874 (VHH874Q) /CSM/VH/VHH8-D/VHH874Q.Seq.d/                        674   0.0
VHG874 (VHG874Q) /CSM/VH/VHG8-D/VHG874Q.Seq.d/                        674   0.0
VHP874 (VHP874Q) /CSM/modify/h12/F/treated/VHP874Q.Seq.d/             674   0.0
VHH874 (VHH874Q) /CSM/VH/VHH8-D/VHH874Q.Seq.d/                        674   0.0
VHG874 (VHG874Q) /CSM/VH/VHG8-D/VHG874Q.Seq.d/                        674   0.0
VHQ491 (VHQ491Q) /CSM/VH/VHQ4-D/VHQ491Q.Seq.d/                        674   0.0
VHQ476 (VHQ476Q) /CSM/VH/VHQ4-D/VHQ476Q.Seq.d/                        674   0.0
VHQ473 (VHQ473Q) /CSM/VH/VHQ4-D/VHQ473Q.Seq.d/                        674   0.0
VHQ469 (VHQ469Q) /CSM/VH/VHQ4-C/VHQ469Q.Seq.d/                        674   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ423885) Dictyostelium discoideum cDNA clone:ddv50p13, 5' ...   674   0.0    2
(BJ419985) Dictyostelium discoideum cDNA clone:ddv37i23, 5' ...   674   0.0    2
(BJ424027) Dictyostelium discoideum cDNA clone:ddv51m02, 5' ...   674   0.0    2
(BJ422759) Dictyostelium discoideum cDNA clone:ddv46o24, 5' ...   674   0.0    2
(BJ418993) Dictyostelium discoideum cDNA clone:ddv34o15, 5' ...   674   0.0    2
(BJ427851) Dictyostelium discoideum cDNA clone:ddv63f24, 5' ...   674   0.0    2
(BJ424782) Dictyostelium discoideum cDNA clone:ddv53f16, 5' ...   674   0.0    2
(BJ418882) Dictyostelium discoideum cDNA clone:ddv34h10, 5' ...   674   0.0    2
(BJ423936) Dictyostelium discoideum cDNA clone:ddv50k20, 5' ...   674   0.0    2
(BJ424706) Dictyostelium discoideum cDNA clone:ddv53e10, 5' ...   674   0.0    2
dna update 2008.11.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM270011_29(AM270011|pid:none) Aspergillus niger contig An02c016...   145   4e-34
AF083031_87(AF083031|pid:none) Guillardia theta nucleomorph chro...   145   6e-34
(Q6FYA7) RecName: Full=Elongation factor 2;          Short=EF-2;...   142   3e-33
AF248644_1(AF248644|pid:none) Filobasidiella neoformans var. neo...   141   8e-33
AY026074_1(AY026074|pid:none) Monosiga brevicollis elongation fa...   139   2e-32
AY144924_1(AY144924|pid:none) Saccharomyces castellii clone Cont...   139   4e-32
CP000881_15(CP000881|pid:none) Hemiselmis andersenii chromosome ...   139   4e-32
(Q874B9) RecName: Full=Elongation factor 2;          Short=EF-2;...   138   5e-32
AP005845_16(AP005845|pid:none) Oryza sativa Japonica Group genom...   137   1e-31
(Q23716) RecName: Full=Elongation factor 2;          Short=EF-2;...   137   2e-31
protein update 2009. 7.14
PSORT 

 psg: 0.71  gvh: 0.38  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.30  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	 20.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for VHJ756 is cyt
5' end seq. ID VHJ756F
5' end seq. 
>VHJ756F.Seq
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA
TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG
GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA
NNNNNNNNNN
Length of 5' end seq. 370
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -