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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHJ615
Library VH
(Link to library)
Clone ID VHJ615
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U12511-1
Original site URL
Representative seq. ID VHJ615P
(Link to Original site)
Representative DNA sequence 
>VHJ615 (VHJ615Q) /CSM/VH/VHJ6-A/VHJ615Q.Seq.d/
ATGGTTTAAATTATCCTTCAACAAAATAAATAAAATAAAATAAATAATGATAAAAATAAT
ATTATTAATTTTATTAATAACAATAATAAAATTAATTAATTGTATAGAAGTTGAAGGAAA
TTCAAATGATAAACAACTATTATTATTAGATAATAAATACCGAGAGAAGGAACCAATTGG
ATTAGAGAATATATTATTTGCAAATAATGAAGATGTAATTAATAGAGGATTGGGTATATT
AAAAGATCAGGGTATTATTTGCAAGGGTGGTAATAAAGTTGAATTAGATATCGTTTGGGA
ATCACAATTAGCAAGTACGATTTCAAATACACCTTTAATAGTTGATTTATTCGGTACAGG
TGATAAACAAATTATTTACACCAATTCTCATACGTACATCGACGTTATCAATGGTATCGA
TGGTGATAGATTAATTAATGGTGGTGGTGGATGGCCATACATTTTACCATACTCATCATT
TTCAACAAGTCCATTAGTTTATGATATTGATGGTAATGGTGATTTAGATATAATGGTGGC
AACAACAGATGCAGAGATATTATTCATAGATTCGAAGAAAGCAGTAGCGATTAAAGAGAA
XXXXXXXXXXANATCCATTNCCNAATTTATCAANATTCNATTCCNAAATNTTTTAANTTT
TANTTTTANAGATTTTTAAAATTCCNTANAATTTTACCCATTTTAANATCNNCNATTTTN
TTNTTNATTTATCNATCNAATAATTNAAAATCNAAAAATATTAAAAAAAANAGNTTNTTA
TAATTAAAAAAAAAAATATAAAAATAAAAAAAAAAATAAAAAAAAATAATAAAAAATAAA
AAATTTCGTTCGTTTTTTTCAAAAAACGNANNAAAGTTAAAGCACTA
sequence update 2002.10.25
Translated Amino Acid sequence 
wfklsfnkinkik*IMIKIILLILLITIIKLINCIEVEGNSNDKQLLLLDNKYREKEPIG
LENILFANNEDVINRGLGILKDQGIICKGGNKVELDIVWESQLASTISNTPLIVDLFGTG
DKQIIYTNSHTYIDVINGIDGDRLINGGGGWPYILPYSSFSTSPLVYDIDGNGDLDIMVA
TTDAEILFIDSKKAVAIKE---

---IHXXIYQXSIPKXFXFXFXRFLKFXXILPILXSXIXXXIYXSNNXKSKNIKKXXXL*
lkkki*k*kkk*kkiiknkkfrsffsknxxklkh
Translated Amino Acid sequence (All Frames) 
Frame A:
mv*iilqqnk*nkinndknniinfinnnnkin*lyrs*rkfk**ttiiir**ipregtnw
ireyiick**rcn**rigyikrsgyylqgw**s*iryrlgitiskydfkytfns*firyr
**tnylhqfsyvhrryqwyrw**in*wwwwmaihftiliifnksisl*y*w*w*fryngg
nnrcrdiihrfeesssd*re---

---xsixxfixixfxnxlxfxfxdf*nsxxfypf*xxxfxxxfixxiixnxkilkkxxxy
n*kkkyknkkknkkk**kiknfvrffqktxxs*st

Frame B:
wfklsfnkinkik*IMIKIILLILLITIIKLINCIEVEGNSNDKQLLLLDNKYREKEPIG
LENILFANNEDVINRGLGILKDQGIICKGGNKVELDIVWESQLASTISNTPLIVDLFGTG
DKQIIYTNSHTYIDVINGIDGDRLINGGGGWPYILPYSSFSTSPLVYDIDGNGDLDIMVA
TTDAEILFIDSKKAVAIKE---

---xpxpnlsxfxsxxf*xlxlxifkipxnfthfxixxfxxxlsix*xkixky*kkxxxi
ikkknikikkkikknnkk*kisfvffkkrxkvkal

Frame C:
glnypstk*ik*nk***k*yy*fy**q**n*liv*klkeiqminnyyy*iinterrnqld
*riyylqimkm*liedwvy*kirvlfarvvikln*isfgnhn*qvrfqihl**liysvqv
inklftpilirtstlsmvsmvid*lmvvvdghtfyhthhfqqvh*fmilmvmvi*i*wwq
qqmqryys*irrkq*rlkr---

---IHXXIYQXSIPKXFXFXFXRFLKFXXILPILXSXIXXXIYXSNNXKSKNIKKXXXL*
lkkki*k*kkk*kkiiknkkfrsffsknxxklkh
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHJ615 (VHJ615Q) /CSM/VH/VHJ6-A/VHJ615Q.Seq.d/                        999   0.0
VHK738 (VHK738Q) /CSM/VH/VHK7-B/VHK738Q.Seq.d/                        991   0.0
AHR293 (AHR293Q) /CSM/AH/AHR2-D/AHR293Q.Seq.d/                        985   0.0
CHP504 (CHP504Q) /CSM/CH/CHP5-A/CHP504Q.Seq.d/                        799   0.0
VFD310 (VFD310Q) /CSM/VF/VFD3-A/VFD310Q.Seq.d/                         40   0.056
SSB547 (SSB547Q) /CSM/SS/SSB5-B/SSB547Q.Seq.d/                         40   0.056
SSB543 (SSB543Q) /CSM/SS/SSB5-B/SSB543Q.Seq.d/                         40   0.056
CFG376 (CFG376Q) /CSM/CF/CFG3-D/CFG376Q.Seq.d/                         40   0.056
SHJ288 (SHJ288Q) /CSM/SH/SHJ2-D/SHJ288Q.Seq.d/                         38   0.22
VSJ775 (VSJ775Q) /CSM/VS/VSJ7-D/VSJ775Q.Seq.d/                         36   0.88
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ423719) Dictyostelium discoideum cDNA clone:ddv50m04, 5' ...   989   0.0    2
(BJ424425) Dictyostelium discoideum cDNA clone:ddv52l09, 5' ...   981   0.0    2
(BJ339584) Dictyostelium discoideum cDNA clone:dda65i24, 5' ...   975   0.0    2
(BJ370146) Dictyostelium discoideum cDNA clone:ddc53g01, 5' ...   678   0.0    3
(BJ442530) Dictyostelium discoideum cDNA clone:ddv50m04, 3' ...    44   0.043  2
(AC161669) Bos taurus clone CH240-104B14, WORKING DRAFT SEQU...    38   0.32   2
(AC153258) Bos taurus clone CH240-23H18, WORKING DRAFT SEQUE...    38   0.32   2
(AE002154) Ureaplasma parvum serovar 3 str. ATCC 700970 sect...    46   0.35   4
(EK161983) 1095458034818 Global-Ocean-Sampling_GS-31-01-01-1...    48   0.57   1
(EJ164040) 1092344058546 Global-Ocean-Sampling_GS-27-01-01-1...    48   0.57   1
dna update 2008.11.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF257187_1(AF257187|pid:none) Arabidopsis thaliana defective in ...    67   6e-10
AC091247_15(AC091247|pid:none) Oryza sativa chromosome 3 BAC OJ1...    64   5e-09
AM494968_11(AM494968|pid:none) Leishmania braziliensis chromosom...    54   5e-06
CP001332_114(CP001332|pid:none) Micromonas sp. RCC299 chromosome...    52   2e-05
AC091527_15(AC091527|pid:none) Trypanosoma brucei chromosome 7 c...    52   3e-05
AY741199_44(AY741199|pid:none) Uncultured archaeon GZfos26D8 clo...    44   0.007
AM746676_5817(AM746676|pid:none) Sorangium cellulosum 'So ce 56'...    43   0.016
AE010299_835(AE010299|pid:none) Methanosarcina acetivorans str. ...    42   0.036
AE017345_388(AE017345|pid:none) Cryptococcus neoformans var. neo...    39   0.23
FJ356713_1(FJ356713|pid:none) Shrimp white spot syndrome virus i...    38   0.40
protein update 2009. 7.14
PSORT 

 psg: 1.00  gvh: 0.67  alm: 0.41  top: 0.33  tms: 0.00  mit: 0.30  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: extracellular, including cell wall
	 16.0 %: cytoplasmic
	 16.0 %: nuclear
	 12.0 %: vacuolar
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: endoplasmic reticulum

>> prediction for VHJ615 is exc
5' end seq. ID VHJ615F
5' end seq. 
>VHJ615F.Seq
ATGGTTTAAATTATCCTTCAACAAAATAAATAAAATAAAATAAATAATGATAAAAATAAT
ATTATTAATTTTATTAATAACAATAATAAAATTAATTAATTGTATAGAAGTTGAAGGAAA
TTCAAATGATAAACAACTATTATTATTAGATAATAAATACCGAGAGAAGGAACCAATTGG
ATTAGAGAATATATTATTTGCAAATAATGAAGATGTAATTAATAGAGGATTGGGTATATT
AAAAGATCAGGGTATTATTTGCAAGGGTGGTAATAAAGTTGAATTAGATATCGTTTGGGA
ATCACAATTAGCAAGTACGATTTCAAATACACCTTTAATAGTTGATTTATTCGGTACAGG
TGATAAACAAATTATTTACACCAATTCTCATACGTACATCGACGTTATCAATGGTATCGA
TGGTGATAGATTAATTAATGGTGGTGGTGGATGGCCATACATTTTACCATACTCATCATT
TTCAACAAGTCCATTAGTTTATGATATTGATGGTAATGGTGATTTAGATATAATGGTGGC
AACAACAGATGCAGAGATATTATTCATAGATTCGAAGAAAGCAGTAGCGATTAAAGAGAA
NNNNNNNNNN
Length of 5' end seq. 610
3' end seq. ID VHJ615Z
3' end seq. 
>VHJ615Z.Seq
NNNNNNNNNNANATCCATTNCCNAATTTATCAANATTCNATTCCNAAATNTTTTAANTTT
TANTTTTANAGATTTTTAAAATTCCNTANAATTTTACCCATTTTAANATCNNCNATTTTN
TTNTTNATTTATCNATCNAATAATTNAAAATCNAAAAATATTAAAAAAAANAGNTTNTTA
TAATTAAAAAAAAAAATATAAAAATAAAAAAAAAAATAAAAAAAAATAATAAAAAATAAA
AAATTTCGTTCGTTTTTTTCAAAAAACGNANNAAAGTTAAAGCACTA
Length of 3' end seq. 287
Connected seq. ID VHJ615P
Connected seq. 
>VHJ615P.Seq
ATGGTTTAAATTATCCTTCAACAAAATAAATAAAATAAAATAAATAATGATAAAAATAAT
ATTATTAATTTTATTAATAACAATAATAAAATTAATTAATTGTATAGAAGTTGAAGGAAA
TTCAAATGATAAACAACTATTATTATTAGATAATAAATACCGAGAGAAGGAACCAATTGG
ATTAGAGAATATATTATTTGCAAATAATGAAGATGTAATTAATAGAGGATTGGGTATATT
AAAAGATCAGGGTATTATTTGCAAGGGTGGTAATAAAGTTGAATTAGATATCGTTTGGGA
ATCACAATTAGCAAGTACGATTTCAAATACACCTTTAATAGTTGATTTATTCGGTACAGG
TGATAAACAAATTATTTACACCAATTCTCATACGTACATCGACGTTATCAATGGTATCGA
TGGTGATAGATTAATTAATGGTGGTGGTGGATGGCCATACATTTTACCATACTCATCATT
TTCAACAAGTCCATTAGTTTATGATATTGATGGTAATGGTGATTTAGATATAATGGTGGC
AACAACAGATGCAGAGATATTATTCATAGATTCGAAGAAAGCAGTAGCGATTAAAGAGAA
----------ANATCCATTNCCNAATTTATCAANATTCNATTCCNAAATNTTTTAANTTT
TANTTTTANAGATTTTTAAAATTCCNTANAATTTTACCCATTTTAANATCNNCNATTTTN
TTNTTNATTTATCNATCNAATAATTNAAAATCNAAAAATATTAAAAAAAANAGNTTNTTA
TAATTAAAAAAAAAAATATAAAAATAAAAAAAAAAATAAAAAAAAATAATAAAAAATAAA
AAATTTCGTTCGTTTTTTTCAAAAAACGNANNAAAGTTAAAGCACTA
Length of connected seq. 877
Full length Seq ID -
Full length Seq. -
Length of full length seq. -