VHJ605
Library VH
(Link to library)
Clone ID VHJ605
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14703-1
Original site URL
Representative seq. ID VHJ605P
(Link to Original site)
Representative DNA sequence
>VHJ605 (VHJ605Q) /CSM/VH/VHJ6-A/VHJ605Q.Seq.d/
AATGAATATAGAGCAACAATTATATCTGGTTCTGCCACATTTGAAGATTTAGCTCATAAA
AATTCAGATTGTAGCAGTGCTAAAAGAGGTGGCTATCTTGATCCATTCAAAAGAGGCCAA
ATGCAAAGACCTTTTGAAGATTGCGCATTTTCTTTAAAAGTTGGTGAAGTTAGTGGCATT
GTAGATACTGATTCAGGTGTTCATATTATTGAAAGATTAGCATAAATAGTAATAAATTAT
AATAGTATATATATATTTTTTAATATTGAATCACTGTTTATTCTATAGTTTATATTTATG
TAAATCAATAAAAAAAATATACATCCAAAGAAATTTTAAAAAAAAAAXXXXXXXXXXAAT
GAATATAGAGCAACAATTATATCTGGTTCTGCCACATTTGAAGATTTAGCTCATAAAAAT
TCAGATTGTAGCAGTGCTAAAAGAGGTGGCTATCTTGATCCATTCAAAAGAGGCCAAATG
CAAAGACCTTTTGAAGATTGCGCATTTTCTTTAAAAGTTGGTGAAGTTAGTGGCATTGTA
GATACTGATTCAGGTGTTCATATTATTGAAAGATTAGCATAAATAGTAATAAATTATAAT
AGTATATATATATTTTTTAATATTGAATCACTGTTTATTCTATAGTTTATATTTATGTAA
ATCAATAAAAAAAATATACATCCAAAGAA
sequence update 2002.10.25
Translated Amino Acid sequence
mnieqqlylvlphlki*likiqivavlkevailihskeakckdllkiahfl*klvklval
*iliqvfillkd*hk***IIIVYIYFLILNHCLFYSLYLCKSIKKIYIQRNFKKK---

---NEYRATIISGSATFEDLAHKNSDCSSAKRGGYLDPFKRGQMQRPFEDCAFSLKVGEV
SGIVDTDSGVHIIERLA*ivinynsiyiffnieslfil*fifm*inkknihpk


Translated Amino Acid sequence (All Frames)
Frame A:
neyratiisgsatfedlahknsdcssakrggyldpfkrgqmqrpfedcafslkvgevsgi
vdtdsgvhiierla*ivinynsiyiffnieslfil*fifm*inkknihpkkf*kk---

---NEYRATIISGSATFEDLAHKNSDCSSAKRGGYLDPFKRGQMQRPFEDCAFSLKVGEV
SGIVDTDSGVHIIERLA*ivinynsiyiffnieslfil*fifm*inkknihpk

Frame B:
mnieqqlylvlphlki*likiqivavlkevailihskeakckdllkiahfl*klvklval
*iliqvfillkd*hk***IIIVYIYFLILNHCLFYSLYLCKSIKKIYIQRNFKKK---

---mnieqqlylvlphlki*likiqivavlkevailihskeakckdllkiahfl*klvkl
val*iliqvfillkd*hk***iiivyiyflilnhclfyslylcksikkiyiqr

Frame C:
*i*snnyiwfchi*rfss*kfrl*qc*krwls*siqkrpnaktf*rlriffksw*s*whc
ry*frcsyy*kisinsnkl**yiyif*y*itvysivyiyvnq*kkytskeilkkk---

---*i*snnyiwfchi*rfss*kfrl*qc*krwls*siqkrpnaktf*rlriffksw*s*
whcry*frcsyy*kisinsnkl**yiyif*y*itvysivyiyvnq*kkytske

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHJ605 (VHJ605Q) /CSM/VH/VHJ6-A/VHJ605Q.Seq.d/ 444 e-124
SSF124 (SSF124Q) /CSM/SS/SSF1-A/SSF124Q.Seq.d/ 444 e-124
SSA808 (SSA808Q) /CSM/SS/SSA8-A/SSA808Q.Seq.d/ 444 e-124
SSI193 (SSI193Q) /CSM/SS/SSI1-D/SSI193Q.Seq.d/ 428 e-119
SSD494 (SSD494Q) /CSM/SS/SSD4-D/SSD494Q.Seq.d/ 385 e-106
SLB374 (SLB374Q) /CSM/SL/SLB3-D/SLB374Q.Seq.d/ 38 0.17
VHK659 (VHK659Q) /CSM/VH/VHK6-C/VHK659Q.Seq.d/ 36 0.68
VHC803 (VHC803Q) /CSM/VH/VHC8-A/VHC803Q.Seq.d/ 36 0.68
VHP715 (VHP715Q) /CSM/VH/VHP7-A/VHP715Q.Seq.d/ 34 2.7
VHM793 (VHM793Q) /CSM/VH/VHM7-D/VHM793Q.Seq.d/ 34 2.7

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ423697) Dictyostelium discoideum cDNA clone:ddv50i02, 5' ... 438 e-123 2
(C92940) Dictyostelium discoideum slug cDNA, clone SSF124. 438 e-120 2
(C92104) Dictyostelium discoideum slug cDNA, clone SSD494. 438 e-120 2
(BJ442509) Dictyostelium discoideum cDNA clone:ddv50i02, 3' ... 438 e-120 2
(AU051808) Dictyostelium discoideum slug cDNA, clone SSA808. 438 e-119 2
(U78757) Dictyostelium discoideum PinA (pinA) mRNA, partial ... 438 e-118 1
(C90182) Dictyostelium discoideum slug cDNA, clone SSI193. 428 e-117 2
(FC805674) CBGC7299.fwd CBGC Lottia gigantea 15h 18h embryos... 72 3e-08 1
(FC800420) CBGC3679.fwd CBGC Lottia gigantea 15h 18h embryos... 72 3e-08 1
(FC800419) CBGC3679.rev CBGC Lottia gigantea 15h 18h embryos... 72 3e-08 1
dna update 2008.11.18
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

U78757_1(U78757|pid:none) Dictyostelium discoideum PinA (pinA) m... 152 9e-36
(Q94G00) RecName: Full=Peptidyl-prolyl cis-trans isomerase 1; ... 98 2e-19
EF085709_1(EF085709|pid:none) Picea sitchensis clone WS02714_C17... 97 4e-19
AK343080_1(AK343080|pid:none) Acyrthosiphon pisum ACYPI007002 mR... 97 5e-19
GN101761_1(GN101761|pid:none) Sequence 6542 from Patent WO200903... 96 8e-19
CU459003_707(CU459003|pid:none) Magnetospirillum gryphiswaldense... 94 4e-18
AC138453_4(AC138453|pid:none) Medicago truncatula clone mth2-20m... 93 9e-18
AL606450_4(AL606450|pid:none) Oryza sativa genomic DNA, chromoso... 93 9e-18
CR855034_1(CR855034|pid:none) Oryza sativa (indica cultivar-grou... 93 9e-18
AY813618_1(AY813618|pid:none) Schistosoma japonicum SJCHGC06702 ... 92 1e-17
protein update 2009. 7.14
PSORT

psg: 0.93 gvh: 0.46 alm: 0.28 top: 0.70 tms: 0.07 mit: 0.29 mip: 0.08
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

48.0 %: nuclear
28.0 %: cytoplasmic
8.0 %: Golgi
8.0 %: mitochondrial
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for VHJ605 is nuc

5' end seq. ID VHJ605F
5' end seq.
>VHJ605F.Seq
AATGAATATAGAGCAACAATTATATCTGGTTCTGCCACATTTGAAGATTTAGCTCATAAA
AATTCAGATTGTAGCAGTGCTAAAAGAGGTGGCTATCTTGATCCATTCAAAAGAGGCCAA
ATGCAAAGACCTTTTGAAGATTGCGCATTTTCTTTAAAAGTTGGTGAAGTTAGTGGCATT
GTAGATACTGATTCAGGTGTTCATATTATTGAAAGATTAGCATAAATAGTAATAAATTAT
AATAGTATATATATATTTTTTAATATTGAATCACTGTTTATTCTATAGTTTATATTTATG
TAAATCAATAAAAAAAATATACATCCAAAGAAATTTTAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 357
3' end seq. ID VHJ605Z
3' end seq.
>VHJ605Z.Seq
NNNNNNNNNNAATGAATATAGAGCAACAATTATATCTGGTTCTGCCACATTTGAAGATTT
AGCTCATAAAAATTCAGATTGTAGCAGTGCTAAAAGAGGTGGCTATCTTGATCCATTCAA
AAGAGGCCAAATGCAAAGACCTTTTGAAGATTGCGCATTTTCTTTAAAAGTTGGTGAAGT
TAGTGGCATTGTAGATACTGATTCAGGTGTTCATATTATTGAAAGATTAGCATAAATAGT
AATAAATTATAATAGTATATATATATTTTTTAATATTGAATCACTGTTTATTCTATAGTT
TATATTTATGTAAATCAATAAAAAAAATATACATCCAAAGAA
Length of 3' end seq. 342
Connected seq. ID VHJ605P
Connected seq.
>VHJ605P.Seq
AATGAATATAGAGCAACAATTATATCTGGTTCTGCCACATTTGAAGATTTAGCTCATAAA
AATTCAGATTGTAGCAGTGCTAAAAGAGGTGGCTATCTTGATCCATTCAAAAGAGGCCAA
ATGCAAAGACCTTTTGAAGATTGCGCATTTTCTTTAAAAGTTGGTGAAGTTAGTGGCATT
GTAGATACTGATTCAGGTGTTCATATTATTGAAAGATTAGCATAAATAGTAATAAATTAT
AATAGTATATATATATTTTTTAATATTGAATCACTGTTTATTCTATAGTTTATATTTATG
TAAATCAATAAAAAAAATATACATCCAAAGAAATTTTAAAAAAAAAA----------AAT
GAATATAGAGCAACAATTATATCTGGTTCTGCCACATTTGAAGATTTAGCTCATAAAAAT
TCAGATTGTAGCAGTGCTAAAAGAGGTGGCTATCTTGATCCATTCAAAAGAGGCCAAATG
CAAAGACCTTTTGAAGATTGCGCATTTTCTTTAAAAGTTGGTGAAGTTAGTGGCATTGTA
GATACTGATTCAGGTGTTCATATTATTGAAAGATTAGCATAAATAGTAATAAATTATAAT
AGTATATATATATTTTTTAATATTGAATCACTGTTTATTCTATAGTTTATATTTATGTAA
ATCAATAAAAAAAATATACATCCAAAGAA
Length of connected seq. 679
Full length Seq ID -
Full length Seq. -
Length of full length seq. -