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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHJ572
Library VH
(Link to library)
Clone ID VHJ572
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13591-1
Original site URL
Representative seq. ID VHJ572P
(Link to Original site)
Representative DNA sequence 
>VHJ572 (VHJ572Q) /CSM/VH/VHJ5-C/VHJ572Q.Seq.d/
AAACCATTGTGATATTACAAACATATAATTTTTTAAAATGCCTTTAAACCTTGTTGCTAG
AAAATCATTAAGAGATAATGAAGAACACTTAAATAAAGCACATGAAGAAATCAAAAATGC
TTTAAATGGTGAAGAATGGATTATTGAATTTGATTGGGATGCCATTTTCGATAAAGTTGA
TGAACATGTTAAAAAACAATTAGGTGAAGTATTTTATAAAAATTTATGTCCAAATATTAG
TAAATGTATTGTAAATGCATCAAAAGATGAATTAACTAAAGAATCAATCATTAATGCAAA
TACTGCTAAAAAGATTGTATTAATTGTTAATGAAGATGCCAAGAATTCATCCTATTGGAA
GTATGCATTTAATGGTGGTCAATTAAATCTTTTATTCAAGAAAGGTTGTAATAATATTAC
TGAAGCTGGTAATTTCGAATTATATAAAGTGATTCCAAGTGAAGGTGCTTATAGTTTACC
AACTCGTCTTAATATGAAAAAGAATCAAGAAAGATTTGAACTTGCATTCGAAAGAATTAA
AGTAGTTACCXXXXXXXXXXTGATAATGCAATTTCGATTTCATAAAGTCNTTCCAGTCCC
AGGTGTTTCTCATTAGCTGCTAAAATCAATTTGAAAGAGANCCAAGAGAAATTCGATACC
GCTTTTGAAAGAATTAAAGAGGTCACTAAAGTAGATTGGTCCTATGATGAGCAATCATTG
GAAACTGTTTATCCAGCACTTGAAGAAAGAAATAAAGAAAGAATTGGTGACTTATTCCAA
GAGATTATTAAATATGTCGCTGATAATATCGTTAAACGTTGTAAAGAGGATATGGTTTTA
GAAAGTTTCCTCGAAGCAACTTCAAATGCAAAGATTGTTTTCCGTCACAATGCCAAAGCA
AACGGTTATTGGAATTGGAGTTTTGAAAACAATGATTTAGTAATCACCTTCAAATCAATT
TGCAATGTTAGTGATAATGCAAACTTTGATTTCATTAAAATTTTACCATCACCAGGTGTA
CTCACTTTAGCCTCTAGAATCAATTTGAGAGAGAATCAAGAGAAAATCAATGAATCTTTC
GAAAAGATTAAAGAAGTCTTGGGTAATGATTGGACTTATGATGAATCTTCAATCGAACAA
GTTTATCCAAAATTAGAAGAAAATAATAAACCACGTGTTGGTGATGTCTTTGCTGAAATC
ATTCGTTACATCAGTCAAAATATCGTTAAAAGATGTAAAGATGATGATATGGTCAAAGAA
GGTTTCGTTGAAGCAACTCAAAATTGTAAAATCGTCTTCCAATTTGTTGAAAAACAAAGT
TCTTATTGGGTTTGGAAATTCGATGGTGGTAATTTAGTCGTATCATTCAAATCAATTTGT
AATACTAGTNATAATGCAAATTTCAATTTNAAGCTCTCCTTTAAAATTAATAAAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
nhcditni*FFKMPLNLVARKSLRDNEEHLNKAHEEIKNALNGEEWIIEFDWDAIFDKVD
EHVKKQLGEVFYKNLCPNISKCIVNASKDELTKESIINANTAKKIVLIVNEDAKNSSYWK
YAFNGGQLNLLFKKGCNNITEAGNFELYKVIPSEGAYSLPTRLNMKKNQERFELAFERIK
VVT---

---IMQFRFHKVXPVPGVSH*llksi*krxkrnsipllkelkrslk*igpmmsnhwklfi
qhlkkeikkelvtyskrllnmsliislnvvkriwf*kvsskqlqmqrlfsvtmpkqtvig
igvlktmi**spsnqfamlvimqtlislkfyhhqvysl*plesi*erikrksmnlskrlk
kswvmiglmmnlqsnkfiqn*kkiinhvlvmsllksfvtsvkislkdvkmmiwskkvslk
qlkivksssnllknkvligfgnsmvvi*syhsnqfvilvimqisixssplklikk
Translated Amino Acid sequence (All Frames) 
Frame A:
kpl*yykhiif*nafkpcc*kiikr**rtlk*st*rnqkcfkw*rmdy*i*lgchfr*s*
*tc*ktir*sil*kfmsky**myckcikr*in*rinh*ckyc*kdcinc**rcqefille
vci*wwsiksfiqerl**yy*sw*frii*sdsk*rcl*ftnss*yekesrki*tcirkn*
ssy---

---**cnfdfiksfqsqvflisc*nqferxpreiryrf*kn*rgh*srlvl**aiigncl
sst*rkk*rknw*liprdy*icr**yr*tl*rgygfrkfprsnfkckdcfpsqcqskrll
elef*kq*fsnhlqinlqc***ckl*fh*nftitrcthfsl*nqferesrenq*ifrkd*
rslg**ldl**ifnrtslskirrk**ttcw*clc*nhslhqskyr*km*r**ygqrrfr*
snskl*nrlpic*ktkfllgleirww*fsriiqinl*y*x*ckfqfxall*n**k

Frame B:
nhcditni*FFKMPLNLVARKSLRDNEEHLNKAHEEIKNALNGEEWIIEFDWDAIFDKVD
EHVKKQLGEVFYKNLCPNISKCIVNASKDELTKESIINANTAKKIVLIVNEDAKNSSYWK
YAFNGGQLNLLFKKGCNNITEAGNFELYKVIPSEGAYSLPTRLNMKKNQERFELAFERIK
VVT---

---dnaisis*sxssprcfslaakinlkexqekfdtaferikevtkvdwsydeqsletvy
paleernkerigdlfqeiikyvadnivkrckedmvlesfleatsnakivfrhnakangyw
nwsfenndlvitfksicnvsdnanfdfikilpspgvltlasrinlrenqekinesfekik
evlgndwtydessieqvypkleennkprvgdvfaeiiryisqnivkrckdddmvkegfve
atqnckivfqfvekqssywvwkfdggnlvvsfksicntsxnanfnxklsfkinkk

Frame C:
tivilqtynflkcl*tlllenh*eimknt*ikhmkkskml*mvkngllnligmpfsiklm
nmlknn*vkyfikiyvqilvnvl*mhqkmn*lknqslmqillkrly*llmkmprihpigs
mhlmvvn*ifysrkvviillklvisnyik*fqvkvlivyqlvli*krikkdlnlhskelk
*l---

---IMQFRFHKVXPVPGVSH*llksi*krxkrnsipllkelkrslk*igpmmsnhwklfi
qhlkkeikkelvtyskrllnmsliislnvvkriwf*kvsskqlqmqrlfsvtmpkqtvig
igvlktmi**spsnqfamlvimqtlislkfyhhqvysl*plesi*erikrksmnlskrlk
kswvmiglmmnlqsnkfiqn*kkiinhvlvmsllksfvtsvkislkdvkmmiwskkvslk
qlkivksssnllknkvligfgnsmvvi*syhsnqfvilvimqisixssplklikk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHJ572 (VHJ572Q) /CSM/VH/VHJ5-C/VHJ572Q.Seq.d/                       2753   0.0
VHA377 (VHA377Q) /CSM/VH/VHA3-D/VHA377Q.Seq.d/                       2656   0.0
VHC827 (VHC827Q) /CSM/VH/VHC8-B/VHC827Q.Seq.d/                       1665   0.0
VFE124 (VFE124Q) /CSM/VF/VFE1-A/VFE124Q.Seq.d/                       1655   0.0
VHJ523 (VHJ523Q) /CSM/VH/VHJ5-A/VHJ523Q.Seq.d/                       1651   0.0
VHC741 (VHC741Q) /CSM/VH/VHC7-B/VHC741Q.Seq.d/                       1649   0.0
VHP414 (VHP414Q) /CSM/VH/VHP4-A/VHP414Q.Seq.d/                       1647   0.0
VHP470 (VHP470Q) /CSM/VH/VHP4-C/VHP470Q.Seq.d/                       1643   0.0
VHJ560 (VHJ560Q) /CSM/VH/VHJ5-C/VHJ560Q.Seq.d/                       1643   0.0
VHP452 (VHP452Q) /CSM/VH/VHP4-C/VHP452Q.Seq.d/                       1637   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ442697) Dictyostelium discoideum cDNA clone:ddv50o17, 3' ...  1703   0.0    1
(BJ438083) Dictyostelium discoideum cDNA clone:ddv36f08, 3' ...  1641   0.0    2
(BJ442531) Dictyostelium discoideum cDNA clone:ddv50m05, 3' ...  1620   0.0    2
(BJ439120) Dictyostelium discoideum cDNA clone:ddv39b17, 3' ...  1618   0.0    1
(BJ443457) Dictyostelium discoideum cDNA clone:ddv52p24, 3' ...  1604   0.0    1
(BJ446080) Dictyostelium discoideum cDNA clone:ddv61h14, 3' ...  1598   0.0    3
(BJ438064) Dictyostelium discoideum cDNA clone:ddv36b11, 3' ...  1594   0.0    2
(BJ446102) Dictyostelium discoideum cDNA clone:ddv61l18, 3' ...  1590   0.0    2
(BJ430898) Dictyostelium discoideum cDNA clone:ddv9o05, 3' e...  1578   0.0    3
(BJ442656) Dictyostelium discoideum cDNA clone:ddv50g15, 3' ...  1574   0.0    3
dna update 2008.11.18
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117081_29(AC117081|pid:none) Dictyostelium discoideum chromoso...   161   6e-38
AC117081_21(AC117081|pid:none) Dictyostelium discoideum chromoso...   160   8e-38
AL844502_159(AL844502|pid:none) Plasmodium falciparum 3D7 chromo...    44   0.011
(P43040) RecName: Full=Uncharacterized protein MCAP_0005; AltNam...    40   0.16
AE017245_484(AE017245|pid:none) Mycoplasma synoviae 53, complete...    39   0.47
CP001581_3540(CP001581|pid:none) Clostridium botulinum A2 str. K...    37   1.4
AY587609_1(AY587609|pid:none) Ascaridia galli lipid binding prot...    37   1.8
CP000383_328(CP000383|pid:none) Cytophaga hutchinsonii ATCC 3340...    37   1.8
AM180355_1608(AM180355|pid:none) Clostridium difficile 630 compl...    37   1.8
AF206632_1(AF206632|pid:none) Plasmodium falciparum isolate FCC1...    37   1.8
protein update 2009. 7.14
PSORT 

 psg: 0.26  gvh: 0.20  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.39  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial

>> prediction for VHJ572 is nuc
5' end seq. ID VHJ572F
5' end seq. 
>VHJ572F.Seq
AAACCATTGTGATATTACAAACATATAATTTTTTAAAATGCCTTTAAACCTTGTTGCTAG
AAAATCATTAAGAGATAATGAAGAACACTTAAATAAAGCACATGAAGAAATCAAAAATGC
TTTAAATGGTGAAGAATGGATTATTGAATTTGATTGGGATGCCATTTTCGATAAAGTTGA
TGAACATGTTAAAAAACAATTAGGTGAAGTATTTTATAAAAATTTATGTCCAAATATTAG
TAAATGTATTGTAAATGCATCAAAAGATGAATTAACTAAAGAATCAATCATTAATGCAAA
TACTGCTAAAAAGATTGTATTAATTGTTAATGAAGATGCCAAGAATTCATCCTATTGGAA
GTATGCATTTAATGGTGGTCAATTAAATCTTTTATTCAAGAAAGGTTGTAATAATATTAC
TGAAGCTGGTAATTTCGAATTATATAAAGTGATTCCAAGTGAAGGTGCTTATAGTTTACC
AACTCGTCTTAATATGAAAAAGAATCAAGAAAGATTTGAACTTGCATTCGAAAGAATTAA
AGTAGTTACCNNNNNNNNNN
Length of 5' end seq. 560
3' end seq. ID VHJ572Z
3' end seq. 
>VHJ572Z.Seq
NNNNNNNNNNTGATAATGCAATTTCGATTTCATAAAGTCNTTCCAGTCCCAGGTGTTTCT
CATTAGCTGCTAAAATCAATTTGAAAGAGANCCAAGAGAAATTCGATACCGCTTTTGAAA
GAATTAAAGAGGTCACTAAAGTAGATTGGTCCTATGATGAGCAATCATTGGAAACTGTTT
ATCCAGCACTTGAAGAAAGAAATAAAGAAAGAATTGGTGACTTATTCCAAGAGATTATTA
AATATGTCGCTGATAATATCGTTAAACGTTGTAAAGAGGATATGGTTTTAGAAAGTTTCC
TCGAAGCAACTTCAAATGCAAAGATTGTTTTCCGTCACAATGCCAAAGCAAACGGTTATT
GGAATTGGAGTTTTGAAAACAATGATTTAGTAATCACCTTCAAATCAATTTGCAATGTTA
GTGATAATGCAAACTTTGATTTCATTAAAATTTTACCATCACCAGGTGTACTCACTTTAG
CCTCTAGAATCAATTTGAGAGAGAATCAAGAGAAAATCAATGAATCTTTCGAAAAGATTA
AAGAAGTCTTGGGTAATGATTGGACTTATGATGAATCTTCAATCGAACAAGTTTATCCAA
AATTAGAAGAAAATAATAAACCACGTGTTGGTGATGTCTTTGCTGAAATCATTCGTTACA
TCAGTCAAAATATCGTTAAAAGATGTAAAGATGATGATATGGTCAAAGAAGGTTTCGTTG
AAGCAACTCAAAATTGTAAAATCGTCTTCCAATTTGTTGAAAAACAAAGTTCTTATTGGG
TTTGGAAATTCGATGGTGGTAATTTAGTCGTATCATTCAAATCAATTTGTAATACTAGTN
ATAATGCAAATTTCAATTTNAAGCTCTCCTTTAAAATTAATAAAAAAA
Length of 3' end seq. 888
Connected seq. ID VHJ572P
Connected seq. 
>VHJ572P.Seq
AAACCATTGTGATATTACAAACATATAATTTTTTAAAATGCCTTTAAACCTTGTTGCTAG
AAAATCATTAAGAGATAATGAAGAACACTTAAATAAAGCACATGAAGAAATCAAAAATGC
TTTAAATGGTGAAGAATGGATTATTGAATTTGATTGGGATGCCATTTTCGATAAAGTTGA
TGAACATGTTAAAAAACAATTAGGTGAAGTATTTTATAAAAATTTATGTCCAAATATTAG
TAAATGTATTGTAAATGCATCAAAAGATGAATTAACTAAAGAATCAATCATTAATGCAAA
TACTGCTAAAAAGATTGTATTAATTGTTAATGAAGATGCCAAGAATTCATCCTATTGGAA
GTATGCATTTAATGGTGGTCAATTAAATCTTTTATTCAAGAAAGGTTGTAATAATATTAC
TGAAGCTGGTAATTTCGAATTATATAAAGTGATTCCAAGTGAAGGTGCTTATAGTTTACC
AACTCGTCTTAATATGAAAAAGAATCAAGAAAGATTTGAACTTGCATTCGAAAGAATTAA
AGTAGTTACC----------TGATAATGCAATTTCGATTTCATAAAGTCNTTCCAGTCCC
AGGTGTTTCTCATTAGCTGCTAAAATCAATTTGAAAGAGANCCAAGAGAAATTCGATACC
GCTTTTGAAAGAATTAAAGAGGTCACTAAAGTAGATTGGTCCTATGATGAGCAATCATTG
GAAACTGTTTATCCAGCACTTGAAGAAAGAAATAAAGAAAGAATTGGTGACTTATTCCAA
GAGATTATTAAATATGTCGCTGATAATATCGTTAAACGTTGTAAAGAGGATATGGTTTTA
GAAAGTTTCCTCGAAGCAACTTCAAATGCAAAGATTGTTTTCCGTCACAATGCCAAAGCA
AACGGTTATTGGAATTGGAGTTTTGAAAACAATGATTTAGTAATCACCTTCAAATCAATT
TGCAATGTTAGTGATAATGCAAACTTTGATTTCATTAAAATTTTACCATCACCAGGTGTA
CTCACTTTAGCCTCTAGAATCAATTTGAGAGAGAATCAAGAGAAAATCAATGAATCTTTC
GAAAAGATTAAAGAAGTCTTGGGTAATGATTGGACTTATGATGAATCTTCAATCGAACAA
GTTTATCCAAAATTAGAAGAAAATAATAAACCACGTGTTGGTGATGTCTTTGCTGAAATC
ATTCGTTACATCAGTCAAAATATCGTTAAAAGATGTAAAGATGATGATATGGTCAAAGAA
GGTTTCGTTGAAGCAACTCAAAATTGTAAAATCGTCTTCCAATTTGTTGAAAAACAAAGT
TCTTATTGGGTTTGGAAATTCGATGGTGGTAATTTAGTCGTATCATTCAAATCAATTTGT
AATACTAGTNATAATGCAAATTTCAATTTNAAGCTCTCCTTTAAAATTAATAAAAAAA
Length of connected seq. 1428
Full length Seq ID -
Full length Seq. -
Length of full length seq. -