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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHJ571
Library VH
(Link to library)
Clone ID VHJ571
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13700-1|Contig-U15783-1
Original site URL
Representative seq. ID VHJ571P
(Link to Original site)
Representative DNA sequence 
>VHJ571 (VHJ571Q) /CSM/VH/VHJ5-C/VHJ571Q.Seq.d/
AGATCTGCAGATATTTAAAATGATTGGTATAGTTTCAAAATTAATAAGACAAGGCACGGG
TAAACAAGCATTAAAAGGTAACCTTGTTACAGTTCACTATACTGGTAAACTCGACAATAA
TGAAGGTAAAAAGTTTGATTCATCAAGAGATAGATCCACACCATTCTCTTTTGTTTTAGG
TAATAGTCAAGTCATCAAAGGATGGGATGAGGGTGTATTAAATAAAAAAGAAGGTGACCT
CATTGAACTTACCATCCCACCAGAGTTTGGATACGGAAATCGTGCTATTGGCCCAATTCC
TGCAGGAAGTACACTTTTCTTTGAAGTTGAGCTCTTAAAAGTTGACCAAAAATAAATAAA
ATCTCTCATAAAAAAAAAAATAAAAAAAAANTAAANAXXXXXXXXXXTTAGGTAATGGAC
CAGGACCAAGAAGGGCACATNCAGCAAATTTAATTGGTAAATTAATATATATTTTTGGAG
GTGGTGATGGTAATAAAGCATTAAATGAAGTTTATGTATTGGATACAGAAACATTGACAT
GGACTTATATA
sequence update 2002.10.25
Translated Amino Acid sequence 
rsadi*ndwysfkinktrhg*tsikr*pcysslyw*trq**r*kv*fikr*ihtilfcfr
**sshqrmg*gcik*krr*ph*tyhptrvwirkscywpnscrkytfl*s*alks*PKINK
ISHKKKNKKKXX---

---LGNGPGPRRAHXANLIGKLIYIFGGGDGNKALNEVYVLDTETLTWTYI
Translated Amino Acid sequence (All Frames) 
Frame A:
rsadi*ndwysfkinktrhg*tsikr*pcysslyw*trq**r*kv*fikr*ihtilfcfr
**sshqrmg*gcik*krr*ph*tyhptrvwirkscywpnscrkytfl*s*alks*PKINK
ISHKKKNKKKXX---

---LGNGPGPRRAHXANLIGKLIYIFGGGDGNKALNEVYVLDTETLTWTYI

Frame B:
dlqifkmigivsklirqgtgkqalkgnlvtvhytgkldnnegkkfdssrdrstpfsfvlg
nsqvikgwdegvlnkkegdlieltippefgygnraigpipagstlffevellkvdqk*ik
slikkkikkx*x---

---*vmdqdqeghxqqi*lvn*yiflevvmvikh*mkfmywiqkh*hgli

Frame C:
icrylk*lv*fqn**dkarvnkh*kvtllqftilvnstimkvkslihqeidphhsllf*v
ivksskdgmrvy*ikkkvtslnlpshqsldteivllaqflqevhfslklss*kltknk*n
ls*kkk*kkxk---

---r*wtrtkkgtxskfnw*iniyfwrw*w**sik*slcigyrnidmdly
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHJ571 (VHJ571Q) /CSM/VH/VHJ5-C/VHJ571Q.Seq.d/                        731   0.0
VSG742 (VSG742Q) /CSM/VS/VSG7-B/VSG742Q.Seq.d/                        698   0.0
VHI878 (VHI878Q) /CSM/VH/VHI8-D/VHI878Q.Seq.d/                        272   5e-72
VFJ647 (VFJ647Q) /CSM/VF/VFJ6-B/VFJ647Q.Seq.d/                        272   5e-72
VSJ835 (VSJ835Q) /CSM/VS/VSJ8-B/VSJ835Q.Seq.d/                         46   6e-04
VSG667 (VSG667Q) /CSM/VS/VSG6-C/VSG667Q.Seq.d/                         46   6e-04
VSF517 (VSF517Q) /CSM/VS/VSF5-A/VSF517Q.Seq.d/                         46   6e-04
VSF243 (VSF243Q) /CSM/VS/VSF2-B/VSF243Q.Seq.d/                         46   6e-04
VSD731 (VSD731Q) /CSM/VS/VSD7-B/VSD731Q.Seq.d/                         46   6e-04
VSA260 (VSA260Q) /CSM/VS/VSA2-C/VSA260Q.Seq.d/                         46   6e-04
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ423872) Dictyostelium discoideum cDNA clone:ddv50m17, 5' ...   688   0.0    1
(AU266773) Dictyostelium discoideum vegetative cDNA clone:VS...   654   0.0    1
(BJ442686) Dictyostelium discoideum cDNA clone:ddv50m17, 3' ...   280   5e-71  1
(BJ442120) Dictyostelium discoideum cDNA clone:ddv48l20, 3' ...   272   1e-68  1
(BJ432985) Dictyostelium discoideum cDNA clone:ddv20m12, 3' ...   272   1e-68  1
(AM198442) Paracentrotus lividus EST, clone MPMGp1172N0244Q,...    52   5e-05  2
(AM594663) Paracentrotus lividus EST, clone MPMGp1173K138Q, ...    52   5e-05  2
(AM584519) Paracentrotus lividus EST, clone MPMGp1173C2239Q,...    52   6e-05  2
(AM595081) Paracentrotus lividus EST, clone MPMGp1173M179Q, ...    52   6e-05  2
(AM578617) Paracentrotus lividus EST, clone MPMGp1173F0624Q,...    52   6e-05  2
dna update 2008.11.18
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000777_1538(CP000777|pid:none) Leptospira biflexa serovar Pato...   131   1e-29
AE010300_2549(AE010300|pid:none) Leptospira interrogans serovar ...   127   2e-28
CP001111_1435(CP001111|pid:none) Stenotrophomonas maltophilia R5...   117   2e-25
AM746676_3800(AM746676|pid:none) Sorangium cellulosum 'So ce 56'...   115   6e-25
CP000777_2577(CP000777|pid:none) Leptospira biflexa serovar Pato...   114   2e-24
AM743169_1604(AM743169|pid:none) Stenotrophomonas maltophilia K2...   113   4e-24
AP009552_5437(AP009552|pid:none) Microcystis aeruginosa NIES-843...   112   5e-24
CP000615_893(CP000615|pid:none) Burkholderia vietnamiensis G4 ch...   112   6e-24
CP000379_1528(CP000379|pid:none) Burkholderia cenocepacia AU 105...   112   8e-24
CP000828_1721(CP000828|pid:none) Acaryochloris marina MBIC11017,...   112   8e-24
protein update 2009. 7.14
PSORT 

 psg: 0.47  gvh: 0.43  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.05
 nuc: 0.02  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: vesicles of secretory system
	  4.0 %: vacuolar

>> prediction for VHJ571 is nuc
5' end seq. ID VHJ571F
5' end seq. 
>VHJ571F.Seq
AGATCTGCAGATATTTAAAATGATTGGTATAGTTTCAAAATTAATAAGACAAGGCACGGG
TAAACAAGCATTAAAAGGTAACCTTGTTACAGTTCACTATACTGGTAAACTCGACAATAA
TGAAGGTAAAAAGTTTGATTCATCAAGAGATAGATCCACACCATTCTCTTTTGTTTTAGG
TAATAGTCAAGTCATCAAAGGATGGGATGAGGGTGTATTAAATAAAAAAGAAGGTGACCT
CATTGAACTTACCATCCCACCAGAGTTTGGATACGGAAATCGTGCTATTGGCCCAATTCC
TGCAGGAAGTACACTTTTCTTTGAAGTTGAGCTCTTAAAAGTTGACCAAAAATAAATAAA
ATCTCTCATAAAAAAAAAAATAAAAAAAAANTAAANANNNNNNNNNN
Length of 5' end seq. 407
3' end seq. ID VHJ571Z
3' end seq. 
>VHJ571Z.Seq
NNNNNNNNNNTTAGGTAATGGACCAGGACCAAGAAGGGCACATNCAGCAAATTTAATTGG
TAAATTAATATATATTTTTGGAGGTGGTGATGGTAATAAAGCATTAAATGAAGTTTATGT
ATTGGATACAGAAACATTGACATGGACTTATATA
Length of 3' end seq. 154
Connected seq. ID VHJ571P
Connected seq. 
>VHJ571P.Seq
AGATCTGCAGATATTTAAAATGATTGGTATAGTTTCAAAATTAATAAGACAAGGCACGGG
TAAACAAGCATTAAAAGGTAACCTTGTTACAGTTCACTATACTGGTAAACTCGACAATAA
TGAAGGTAAAAAGTTTGATTCATCAAGAGATAGATCCACACCATTCTCTTTTGTTTTAGG
TAATAGTCAAGTCATCAAAGGATGGGATGAGGGTGTATTAAATAAAAAAGAAGGTGACCT
CATTGAACTTACCATCCCACCAGAGTTTGGATACGGAAATCGTGCTATTGGCCCAATTCC
TGCAGGAAGTACACTTTTCTTTGAAGTTGAGCTCTTAAAAGTTGACCAAAAATAAATAAA
ATCTCTCATAAAAAAAAAAATAAAAAAAAANTAAANA----------TTAGGTAATGGAC
CAGGACCAAGAAGGGCACATNCAGCAAATTTAATTGGTAAATTAATATATATTTTTGGAG
GTGGTGATGGTAATAAAGCATTAAATGAAGTTTATGTATTGGATACAGAAACATTGACAT
GGACTTATATA
Length of connected seq. 541
Full length Seq ID -
Full length Seq. -
Length of full length seq. -