VHJ560
Library VH
(Link to library)
Clone ID VHJ560
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13591-1
Original site URL
Representative seq. ID VHJ560P
(Link to Original site)
Representative DNA sequence
>VHJ560 (VHJ560Q) /CSM/VH/VHJ5-C/VHJ560Q.Seq.d/
AAACCATTGTGATATTACAAACATATAATTTTTTAAAATGCCTTTAAACCTTGTTGCTAG
AAAATCATTAAGAGATAATGAAGAACACTTAAATAAAGCACATGAAGAAATCAAAAATGC
TTTAAATGGTGAAGAATGGATTATTGAATTTGATTGGGATGCCATTTTCGATAAAGTTGA
TGAACATGTTAAAAAACAATTAGGTGAAGTATTTTATAAAAATTTATGTCCAAATATTAG
TAAATGTATTGTAAATGCATCAAAAGATGAATTAACTAAAGAATCAATCATTAATGCAAA
TACTGCTAAAAAGATTGTATTAATTGTTAATGAAGATGCCAAGAATTCATCCTATTGGAA
GTATGCATTTAATGGTGGTCAATTAAATCTTTTATTCAAGAAAGGTTGTAATAATATTAC
TGAAGCTGGTAATTTCGAATTATATAAAGTGATTCCAAGTGAAGGTGCTTATAGTTTACC
AACTCGTCTTAATATGAAAAAGAATCAAGAAAGATTTGAACTTGCATTCGAAAGAATTAA
AGTAGTTACCAGTAGAGATTGGTCATTTGATGAAGCATCAATGGAAACTGTTTATCCAAC
TGCTTTTGAACATGAAAGTCAACXXXXXXXXXXTCNCNTTAAATCATTTGTAATTNTCTG
ATAATGCCAATTTCGATTTCATAAAGTCCTTCCAGTACCAGGTGTTTTCTCATTAGCTGC
TAAAATCAATTTGAAAGAGANCCAAGAGAAATTCGATACCGCTTTTGAAAGAATTAAAGA
GGTCACTAAAGTAGATTGGTCCTATGATGAGCAATCATTGGAAACTGTTTATCCAGCACT
TGAAGAAAGAAATAAAGAAAGAATTGGTGACTTATTCCAAGAGATTATTAAATATGTCGC
TGATAATATCGTTAAACGTTGTAAAGAGGATATGGTTTTAGAAAGTTTCCTCGAAGCAAC
TTCAAATGCAAAGATTGTTTTCCGTCACAATGCCAAAGCAAACGGTTATTGGAATTGGAG
TTTTGAAAACAATGATTTAGTAATCACCTTCAAATCAATTTGCAATGTTAGTGATAATGC
AAACTTTGATTTCATTAAAATTTTACCATCACCAGGTGTACTCACTTTAGCCTCTAGAAT
CAATTTGAGAGAGAATCAAGAGAAAATCAATGAATCTTTCAAAAAGATTAAAGAAGTCTT
GGGTAATGATTGGACTTATGATGAATCTTCAATCGAACAAGTTTATCCAAAATTAGAAGA
AAATAATAAACCACGTGTTGGTGATGTCTTTGCTGAAATCATTCGTTACATCAGTCAAAA
TATCGTTAAAAGATGTAAAGATGATGATATGGTCAAAGAAGGTTTCGTTGAAGCAACTCA
AAATTGTAAAATCGTCTTCCAATTTGTTGAAAAACAAAGTTCTTATTGGGTTTGGAAATT
CGATGGTGGTAATTTAGTCGTATCATTCAAATCAATTTGTAATACTAGTGATAATGCAAA
TTTCAATTTTGAAGCTCTCCTTTAAAATTAANAAAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence
nhcditni*FFKMPLNLVARKSLRDNEEHLNKAHEEIKNALNGEEWIIEFDWDAIFDKVD
EHVKKQLGEVFYKNLCPNISKCIVNASKDELTKESIINANTAKKIVLIVNEDAKNSSYWK
YAFNGGQLNLLFKKGCNNITEAGNFELYKVIPSEGAYSLPTRLNMKKNQERFELAFERIK
VVTSRDWSFDEASMETVYPTAFEHESQ---

---XXKSFVIX**cqfrfhkvlpvpgvfslaakinlkexqekfdtaferikevtkvdwsy
deqsletvypaleernkerigdlfqeiikyvadnivkrckedmvlesfleatsnakivfr
hnakangywnwsfenndlvitfksicnvsdnanfdfikilpspgvltlasrinlrenqek
inesfkkikevlgndwtydessieqvypkleennkprvgdvfaeiiryisqnivkrckdd
dmvkegfveatqnckivfqfvekqssywvwkfdggnlvvsfksicntsdnanfnfeall*
n*xk


Translated Amino Acid sequence (All Frames)
Frame A:
kpl*yykhiif*nafkpcc*kiikr**rtlk*st*rnqkcfkw*rmdy*i*lgchfr*s*
*tc*ktir*sil*kfmsky**myckcikr*in*rinh*ckyc*kdcinc**rcqefille
vci*wwsiksfiqerl**yy*sw*frii*sdsk*rcl*ftnss*yekesrki*tcirkn*
ssyq*rlvi**singnclsncf*t*ks---

---sx*iicnxlimpisis*spsstrcflisc*nqferxpreiryrf*kn*rgh*srlvl
**aiignclsst*rkk*rknw*liprdy*icr**yr*tl*rgygfrkfprsnfkckdcfp
sqcqskrllelef*kq*fsnhlqinlqc***ckl*fh*nftitrcthfsl*nqferesre
nq*ifqkd*rslg**ldl**ifnrtslskirrk**ttcw*clc*nhslhqskyr*km*r*
*ygqrrfr*snskl*nrlpic*ktkfllgleirww*fsriiqinl*y***ckfqf*sspl
klxkk

Frame B:
nhcditni*FFKMPLNLVARKSLRDNEEHLNKAHEEIKNALNGEEWIIEFDWDAIFDKVD
EHVKKQLGEVFYKNLCPNISKCIVNASKDELTKESIINANTAKKIVLIVNEDAKNSSYWK
YAFNGGQLNLLFKKGCNNITEAGNFELYKVIPSEGAYSLPTRLNMKKNQERFELAFERIK
VVTSRDWSFDEASMETVYPTAFEHESQ---

---XXKSFVIX**cqfrfhkvlpvpgvfslaakinlkexqekfdtaferikevtkvdwsy
deqsletvypaleernkerigdlfqeiikyvadnivkrckedmvlesfleatsnakivfr
hnakangywnwsfenndlvitfksicnvsdnanfdfikilpspgvltlasrinlrenqek
inesfkkikevlgndwtydessieqvypkleennkprvgdvfaeiiryisqnivkrckdd
dmvkegfveatqnckivfqfvekqssywvwkfdggnlvvsfksicntsdnanfnfeall*
n*xk

Frame C:
tivilqtynflkcl*tlllenh*eimknt*ikhmkkskml*mvkngllnligmpfsiklm
nmlknn*vkyfikiyvqilvnvl*mhqkmn*lknqslmqillkrly*llmkmprihpigs
mhlmvvn*ifysrkvviillklvisnyik*fqvkvlivyqlvli*krikkdlnlhskelk
*lpveighlmkhqwklfiqlllnmkvn---

---xlnhl*xsdnanfdfiksfqyqvfsh*llksi*krxkrnsipllkelkrslk*igpm
msnhwklfiqhlkkeikkelvtyskrllnmsliislnvvkriwf*kvsskqlqmqrlfsv
tmpkqtvigigvlktmi**spsnqfamlvimqtlislkfyhhqvysl*plesi*erikrk
smnlskrlkkswvmiglmmnlqsnkfiqn*kkiinhvlvmsllksfvtsvkislkdvkmm
iwskkvslkqlkivksssnllknkvligfgnsmvvi*syhsnqfvilvimqisilklsfk
ixkk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHJ560 (VHJ560Q) /CSM/VH/VHJ5-C/VHJ560Q.Seq.d/ 2952 0.0
VHC827 (VHC827Q) /CSM/VH/VHC8-B/VHC827Q.Seq.d/ 1727 0.0
VHI881 (VHI881Q) /CSM/VH/VHI8-D/VHI881Q.Seq.d/ 1679 0.0
VHP414 (VHP414Q) /CSM/VH/VHP4-A/VHP414Q.Seq.d/ 1677 0.0
VHJ523 (VHJ523Q) /CSM/VH/VHJ5-A/VHJ523Q.Seq.d/ 1675 0.0
VHA337 (VHA337Q) /CSM/VH/VHA3-B/VHA337Q.Seq.d/ 1669 0.0
VHO667 (VHO667Q) /CSM/VH/VHO6-C/VHO667Q.Seq.d/ 1665 0.0
VHP452 (VHP452Q) /CSM/VH/VHP4-C/VHP452Q.Seq.d/ 1657 0.0
VHC741 (VHC741Q) /CSM/VH/VHC7-B/VHC741Q.Seq.d/ 1655 0.0
VHD763 (VHD763Q) /CSM/VH/VHD7-C/VHD763Q.Seq.d/ 1653 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ442656) Dictyostelium discoideum cDNA clone:ddv50g15, 3' ... 1758 0.0 1
(BJ436501) Dictyostelium discoideum cDNA clone:ddv31j09, 3' ... 1653 0.0 1
(BJ445762) Dictyostelium discoideum cDNA clone:ddv60f16, 3' ... 1651 0.0 1
(BJ445760) Dictyostelium discoideum cDNA clone:ddv60e18, 3' ... 1641 0.0 2
(BJ445947) Dictyostelium discoideum cDNA clone:ddv61l04, 3' ... 1635 0.0 3
(BJ442531) Dictyostelium discoideum cDNA clone:ddv50m05, 3' ... 1628 0.0 3
(BJ438083) Dictyostelium discoideum cDNA clone:ddv36f08, 3' ... 1624 0.0 2
(BJ443457) Dictyostelium discoideum cDNA clone:ddv52p24, 3' ... 1610 0.0 2
(BJ438333) Dictyostelium discoideum cDNA clone:ddv37i16, 3' ... 1610 0.0 2
(BJ441941) Dictyostelium discoideum cDNA clone:ddv48g09, 3' ... 1604 0.0 1
dna update 2008.11.18
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC117081_29(AC117081|pid:none) Dictyostelium discoideum chromoso... 162 2e-38
AC117081_21(AC117081|pid:none) Dictyostelium discoideum chromoso... 162 3e-38
AL844502_159(AL844502|pid:none) Plasmodium falciparum 3D7 chromo... 43 0.036
(P43040) RecName: Full=Uncharacterized protein MCAP_0005; AltNam... 39 0.39
AE017245_484(AE017245|pid:none) Mycoplasma synoviae 53, complete... 37 1.5
CP001581_3540(CP001581|pid:none) Clostridium botulinum A2 str. K... 37 1.9
CP001146_1446(CP001146|pid:none) Dictyoglomus thermophilum H-6-1... 37 1.9
CP000383_328(CP000383|pid:none) Cytophaga hutchinsonii ATCC 3340... 37 2.0
AM180355_1608(AM180355|pid:none) Clostridium difficile 630 compl... 37 2.5
AY587609_1(AY587609|pid:none) Ascaridia galli lipid binding prot... 36 4.3
protein update 2009. 7.14
PSORT

psg: 0.26 gvh: 0.20 alm: 0.51 top: 0.53 tms: 0.00 mit: 0.39 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: nuclear
32.0 %: cytoplasmic
8.0 %: cytoskeletal
8.0 %: mitochondrial

>> prediction for VHJ560 is nuc

5' end seq. ID VHJ560F
5' end seq.
>VHJ560F.Seq
AAACCATTGTGATATTACAAACATATAATTTTTTAAAATGCCTTTAAACCTTGTTGCTAG
AAAATCATTAAGAGATAATGAAGAACACTTAAATAAAGCACATGAAGAAATCAAAAATGC
TTTAAATGGTGAAGAATGGATTATTGAATTTGATTGGGATGCCATTTTCGATAAAGTTGA
TGAACATGTTAAAAAACAATTAGGTGAAGTATTTTATAAAAATTTATGTCCAAATATTAG
TAAATGTATTGTAAATGCATCAAAAGATGAATTAACTAAAGAATCAATCATTAATGCAAA
TACTGCTAAAAAGATTGTATTAATTGTTAATGAAGATGCCAAGAATTCATCCTATTGGAA
GTATGCATTTAATGGTGGTCAATTAAATCTTTTATTCAAGAAAGGTTGTAATAATATTAC
TGAAGCTGGTAATTTCGAATTATATAAAGTGATTCCAAGTGAAGGTGCTTATAGTTTACC
AACTCGTCTTAATATGAAAAAGAATCAAGAAAGATTTGAACTTGCATTCGAAAGAATTAA
AGTAGTTACCAGTAGAGATTGGTCATTTGATGAAGCATCAATGGAAACTGTTTATCCAAC
TGCTTTTGAACATGAAAGTCAACNNNNNNNNNN
Length of 5' end seq. 633
3' end seq. ID VHJ560Z
3' end seq.
>VHJ560Z.Seq
NNNNNNNNNNTCNCNTTAAATCATTTGTAATTNTCTGATAATGCCAATTTCGATTTCATA
AAGTCCTTCCAGTACCAGGTGTTTTCTCATTAGCTGCTAAAATCAATTTGAAAGAGANCC
AAGAGAAATTCGATACCGCTTTTGAAAGAATTAAAGAGGTCACTAAAGTAGATTGGTCCT
ATGATGAGCAATCATTGGAAACTGTTTATCCAGCACTTGAAGAAAGAAATAAAGAAAGAA
TTGGTGACTTATTCCAAGAGATTATTAAATATGTCGCTGATAATATCGTTAAACGTTGTA
AAGAGGATATGGTTTTAGAAAGTTTCCTCGAAGCAACTTCAAATGCAAAGATTGTTTTCC
GTCACAATGCCAAAGCAAACGGTTATTGGAATTGGAGTTTTGAAAACAATGATTTAGTAA
TCACCTTCAAATCAATTTGCAATGTTAGTGATAATGCAAACTTTGATTTCATTAAAATTT
TACCATCACCAGGTGTACTCACTTTAGCCTCTAGAATCAATTTGAGAGAGAATCAAGAGA
AAATCAATGAATCTTTCAAAAAGATTAAAGAAGTCTTGGGTAATGATTGGACTTATGATG
AATCTTCAATCGAACAAGTTTATCCAAAATTAGAAGAAAATAATAAACCACGTGTTGGTG
ATGTCTTTGCTGAAATCATTCGTTACATCAGTCAAAATATCGTTAAAAGATGTAAAGATG
ATGATATGGTCAAAGAAGGTTTCGTTGAAGCAACTCAAAATTGTAAAATCGTCTTCCAAT
TTGTTGAAAAACAAAGTTCTTATTGGGTTTGGAAATTCGATGGTGGTAATTTAGTCGTAT
CATTCAAATCAATTTGTAATACTAGTGATAATGCAAATTTCAATTTTGAAGCTCTCCTTT
AAAATTAANAAAAAAA
Length of 3' end seq. 916
Connected seq. ID VHJ560P
Connected seq.
>VHJ560P.Seq
AAACCATTGTGATATTACAAACATATAATTTTTTAAAATGCCTTTAAACCTTGTTGCTAG
AAAATCATTAAGAGATAATGAAGAACACTTAAATAAAGCACATGAAGAAATCAAAAATGC
TTTAAATGGTGAAGAATGGATTATTGAATTTGATTGGGATGCCATTTTCGATAAAGTTGA
TGAACATGTTAAAAAACAATTAGGTGAAGTATTTTATAAAAATTTATGTCCAAATATTAG
TAAATGTATTGTAAATGCATCAAAAGATGAATTAACTAAAGAATCAATCATTAATGCAAA
TACTGCTAAAAAGATTGTATTAATTGTTAATGAAGATGCCAAGAATTCATCCTATTGGAA
GTATGCATTTAATGGTGGTCAATTAAATCTTTTATTCAAGAAAGGTTGTAATAATATTAC
TGAAGCTGGTAATTTCGAATTATATAAAGTGATTCCAAGTGAAGGTGCTTATAGTTTACC
AACTCGTCTTAATATGAAAAAGAATCAAGAAAGATTTGAACTTGCATTCGAAAGAATTAA
AGTAGTTACCAGTAGAGATTGGTCATTTGATGAAGCATCAATGGAAACTGTTTATCCAAC
TGCTTTTGAACATGAAAGTCAAC----------TCNCNTTAAATCATTTGTAATTNTCTG
ATAATGCCAATTTCGATTTCATAAAGTCCTTCCAGTACCAGGTGTTTTCTCATTAGCTGC
TAAAATCAATTTGAAAGAGANCCAAGAGAAATTCGATACCGCTTTTGAAAGAATTAAAGA
GGTCACTAAAGTAGATTGGTCCTATGATGAGCAATCATTGGAAACTGTTTATCCAGCACT
TGAAGAAAGAAATAAAGAAAGAATTGGTGACTTATTCCAAGAGATTATTAAATATGTCGC
TGATAATATCGTTAAACGTTGTAAAGAGGATATGGTTTTAGAAAGTTTCCTCGAAGCAAC
TTCAAATGCAAAGATTGTTTTCCGTCACAATGCCAAAGCAAACGGTTATTGGAATTGGAG
TTTTGAAAACAATGATTTAGTAATCACCTTCAAATCAATTTGCAATGTTAGTGATAATGC
AAACTTTGATTTCATTAAAATTTTACCATCACCAGGTGTACTCACTTTAGCCTCTAGAAT
CAATTTGAGAGAGAATCAAGAGAAAATCAATGAATCTTTCAAAAAGATTAAAGAAGTCTT
GGGTAATGATTGGACTTATGATGAATCTTCAATCGAACAAGTTTATCCAAAATTAGAAGA
AAATAATAAACCACGTGTTGGTGATGTCTTTGCTGAAATCATTCGTTACATCAGTCAAAA
TATCGTTAAAAGATGTAAAGATGATGATATGGTCAAAGAAGGTTTCGTTGAAGCAACTCA
AAATTGTAAAATCGTCTTCCAATTTGTTGAAAAACAAAGTTCTTATTGGGTTTGGAAATT
CGATGGTGGTAATTTAGTCGTATCATTCAAATCAATTTGTAATACTAGTGATAATGCAAA
TTTCAATTTTGAAGCTCTCCTTTAAAATTAANAAAAAAA
Length of connected seq. 1529
Full length Seq ID -
Full length Seq. -
Length of full length seq. -