VHJ539
Library VH
(Link to library)
Clone ID VHJ539
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16260-1
Original site URL
Representative seq. ID VHJ539P
(Link to Original site)
Representative DNA sequence
>VHJ539 (VHJ539Q) /CSM/VH/VHJ5-B/VHJ539Q.Seq.d/
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAGAGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA
TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG
GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA
GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG
TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA
AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAXXXXXXXXXXATAACCA
CGAATGGGATAAAAATGATGCCATGAACATTTGGTCTTTCGGTCCAGAAGGTAACGGTAC
CAATCTCCTCGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAATTAAAGATTCTTT
CGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAACATGAGAGG
TATCCGTTTCAATCTTTATGATGTCACCCTCCACACTGATGCCATCCACAGAGGTGGTGG
TCAAATCATCCCAACTGCTCGTCGTGTACTCTATGCTGCTGAATTAACTGCCTCCCCAAC
TCTCTTAGAACCAATCTACTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGTGGTAT
TTACTCTGTACTCAATCGTCGTAGAGGTATTGTTATTGGTGAAGAACGTCGTATCGGTTC
CCCATTATTCTCTGTCAAAGCTCATTTACCAGTATTAGAATCCTTCGGTTTCACCGCTGA
TTTACGTTCCCACACTGCCGGTCAAGCTTTCCCACAATGTGTCTTCGATCATTGGGCTTC
AATTGGTGTTGTCAACAAAGATAAGAAAGCCACTGAAGTCGCTTTAGCCACCAGAAAGAG
AAAAGGTTTAGCCCCAGAAATCCCAGATCTGACAAATTCCACGAAAAACTCTAAACAATT
TAAGTCGCACTGAGTTTTCAAA
sequence update 2002.10.25
Translated Amino Acid sequence
LSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKV
SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFS
SEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLL---

---NHEWDKNDAMNIWSFGPEGNGTNLLVNVTKGVQYLNEIKDSFVGAFQWATKEGVVCD
ENMRGIRFNLYDVTLHTDAIHRGGGQIIPTARRVLYAAELTASPTLLEPIYLVEITAPEN
AIGGIYSVLNRRRGIVIGEERRIGSPLFSVKAHLPVLESFGFTADLRSHTAGQAFPQCVF
DHWASIGVVNKDKKATEVALATRKRKGLAPEIPDLTNSTKNSKQFKSH*vfk


Translated Amino Acid sequence (All Frames)
Frame A:
nsrvqkk*stkwlisqsikfvplwtvvkiseicllllmsitvkplyqil*srelvllpik
flvi*dichvvlmnksvvsplnlhlyhftskcqrktnyqlvvlhtnf*silsipqvtlis
vqk*llpsvllmvl*slsiaskvfaykpklyyvkpslnvsnqsysstksivsy*---

---ittngikmmp*tfglsvqkvtvpisssmspkvfni*mklkilslvlsngppkkvlfv
mkt*evsvsifmmspstlmpstevvvkssqllvvysmlln*lppqls*nqst**kllpqk
tllvvftlysivvevlllvknvvsvphyslskliyqy*npsvspliyvptlpvklshnvs
siiglqlvlstkirkplksl*pperekv*pqksqi*qiprktlnnlsrtefs

Frame B:
tleckkskvqng*fhnrsnschygps*kyqkyvcycscrsr*nhfirffnpeswyycr*s
fw*yeiyvmsc**trawyhh*ificitslrnakgrqitswlyftrifnqsyrfprsr*fq
frsnccppcy*wcfsryrlrrrclrtnrncitssrr*tyqtslirqqsrsflir---

---*prmg*k*chehlvfrsrr*ryqsprqchqrcsife*n*rffrwcfpmghqrrccl*
*kherypfqsl*chpph*chpqrwwsnhpncssctlcc*inclpnslrtnllsrnycprk
rywwyllctqss*rycyw*rtsyrfpiilcqssftsirilrfhr*ftfphcrssfptmcl
rslgfnwccqqr*esh*srfshqkekrfsprnprsdkfhekl*ti*valsfq

Frame C:
LSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKV
SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFS
SEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLL---

---NHEWDKNDAMNIWSFGPEGNGTNLLVNVTKGVQYLNEIKDSFVGAFQWATKEGVVCD
ENMRGIRFNLYDVTLHTDAIHRGGGQIIPTARRVLYAAELTASPTLLEPIYLVEITAPEN
AIGGIYSVLNRRRGIVIGEERRIGSPLFSVKAHLPVLESFGFTADLRSHTAGQAFPQCVF
DHWASIGVVNKDKKATEVALATRKRKGLAPEIPDLTNSTKNSKQFKSH*vfk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHJ539 (VHJ539Q) /CSM/VH/VHJ5-B/VHJ539Q.Seq.d/ 2323 0.0
VHJ678 (VHJ678Q) /CSM/VH/VHJ6-D/VHJ678Q.Seq.d/ 1358 0.0
VHH574 (VHH574Q) /CSM/VH/VHH5-D/VHH574Q.Seq.d/ 1346 0.0
VHO711 (VHO711Q) /CSM/VH/VHO7-A/VHO711Q.Seq.d/ 1344 0.0
VHO564 (VHO564Q) /CSM/VH/VHO5-C/VHO564Q.Seq.d/ 1344 0.0
VHK740 (VHK740Q) /CSM/VH/VHK7-B/VHK740Q.Seq.d/ 1344 0.0
VHK672 (VHK672Q) /CSM/VH/VHK6-C/VHK672Q.Seq.d/ 1344 0.0
VHK412 (VHK412Q) /CSM/VH/VHK4-A/VHK412Q.Seq.d/ 1344 0.0
VHK338 (VHK338Q) /CSM/VH/VHK3-B/VHK338Q.Seq.d/ 1344 0.0
VHJ541 (VHJ541Q) /CSM/VH/VHJ5-B/VHJ541Q.Seq.d/ 1344 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ442606) Dictyostelium discoideum cDNA clone:ddv50m09, 3' ... 1366 0.0 1
(BJ442759) Dictyostelium discoideum cDNA clone:ddv50k20, 3' ... 1358 0.0 1
(BJ441455) Dictyostelium discoideum cDNA clone:ddv46c19, 3' ... 1346 0.0 1
(BJ445645) Dictyostelium discoideum cDNA clone:ddv60m04, 3' ... 1344 0.0 1
(BJ445805) Dictyostelium discoideum cDNA clone:ddv60o15, 3' ... 1336 0.0 1
(BJ444766) Dictyostelium discoideum cDNA clone:ddv57k12, 3' ... 1336 0.0 1
(BJ442915) Dictyostelium discoideum cDNA clone:ddv51h08, 3' ... 1336 0.0 1
(BJ442828) Dictyostelium discoideum cDNA clone:ddv51h04, 3' ... 1336 0.0 1
(BJ442696) Dictyostelium discoideum cDNA clone:ddv50o16, 3' ... 1336 0.0 1
(BJ437729) Dictyostelium discoideum cDNA clone:ddv35n06, 3' ... 1336 0.0 1
dna update 2008.11.18
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AY069933_1(AY069933|pid:none) Rana sylvatica eukaryotic translat... 281 3e-74
AY391422_1(AY391422|pid:none) Danio rerio eukaryotic translation... 281 4e-74
BT071866_1(BT071866|pid:none) Salmo salar clone ssal-rgf-501-088... 280 1e-73
BT059038_1(BT059038|pid:none) Salmo salar clone ssal-rgf-521-328... 280 1e-73
BT045031_1(BT045031|pid:none) Salmo salar clone ssal-rgf-510-120... 278 2e-73
BT072304_1(BT072304|pid:none) Salmo salar clone ssal-rgf-520-280... 278 2e-73
BC089730_1(BC089730|pid:none) Xenopus tropicalis MGC108369 prote... 278 4e-73
BC060707_1(BC060707|pid:none) Mus musculus eukaryotic translatio... 275 2e-72
AK161993_1(AK161993|pid:none) Mus musculus 12 days embryo male w... 275 2e-72
AK298498_1(AK298498|pid:none) Homo sapiens cDNA FLJ56548 complet... 275 2e-72
protein update 2009. 7.14
PSORT

psg: 0.71 gvh: 0.38 alm: 0.34 top: 0.53 tms: 0.00 mit: 0.30 mip: 0.00
nuc: 0.04 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
36.0 %: nuclear
4.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for VHJ539 is cyt

5' end seq. ID VHJ539F
5' end seq.
>VHJ539F.Seq
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAGAGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA
TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG
GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA
GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG
TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA
AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGANNNNNNNNNN
Length of 5' end seq. 533
3' end seq. ID VHJ539Z
3' end seq.
>VHJ539Z.Seq
NNNNNNNNNNATAACCACGAATGGGATAAAAATGATGCCATGAACATTTGGTCTTTCGGT
CCAGAAGGTAACGGTACCAATCTCCTCGTCAATGTCACCAAAGGTGTTCAATATTTGAAT
GAAATTAAAGATTCTTTCGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGT
GATGAAAACATGAGAGGTATCCGTTTCAATCTTTATGATGTCACCCTCCACACTGATGCC
ATCCACAGAGGTGGTGGTCAAATCATCCCAACTGCTCGTCGTGTACTCTATGCTGCTGAA
TTAACTGCCTCCCCAACTCTCTTAGAACCAATCTACTTAGTAGAAATTACTGCCCCAGAA
AACGCTATTGGTGGTATTTACTCTGTACTCAATCGTCGTAGAGGTATTGTTATTGGTGAA
GAACGTCGTATCGGTTCCCCATTATTCTCTGTCAAAGCTCATTTACCAGTATTAGAATCC
TTCGGTTTCACCGCTGATTTACGTTCCCACACTGCCGGTCAAGCTTTCCCACAATGTGTC
TTCGATCATTGGGCTTCAATTGGTGTTGTCAACAAAGATAAGAAAGCCACTGAAGTCGCT
TTAGCCACCAGAAAGAGAAAAGGTTTAGCCCCAGAAATCCCAGATCTGACAAATTCCACG
AAAAACTCTAAACAATTTAAGTCGCACTGAGTTTTCAAA
Length of 3' end seq. 699
Connected seq. ID VHJ539P
Connected seq.
>VHJ539P.Seq
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAGAGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA
TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG
GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA
GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG
TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA
AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGA----------ATAACCA
CGAATGGGATAAAAATGATGCCATGAACATTTGGTCTTTCGGTCCAGAAGGTAACGGTAC
CAATCTCCTCGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAATTAAAGATTCTTT
CGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAACATGAGAGG
TATCCGTTTCAATCTTTATGATGTCACCCTCCACACTGATGCCATCCACAGAGGTGGTGG
TCAAATCATCCCAACTGCTCGTCGTGTACTCTATGCTGCTGAATTAACTGCCTCCCCAAC
TCTCTTAGAACCAATCTACTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGTGGTAT
TTACTCTGTACTCAATCGTCGTAGAGGTATTGTTATTGGTGAAGAACGTCGTATCGGTTC
CCCATTATTCTCTGTCAAAGCTCATTTACCAGTATTAGAATCCTTCGGTTTCACCGCTGA
TTTACGTTCCCACACTGCCGGTCAAGCTTTCCCACAATGTGTCTTCGATCATTGGGCTTC
AATTGGTGTTGTCAACAAAGATAAGAAAGCCACTGAAGTCGCTTTAGCCACCAGAAAGAG
AAAAGGTTTAGCCCCAGAAATCCCAGATCTGACAAATTCCACGAAAAACTCTAAACAATT
TAAGTCGCACTGAGTTTTCAAA
Length of connected seq. 1212
Full length Seq ID -
Full length Seq. -
Length of full length seq. -