VHJ523
Library VH
(Link to library)
Clone ID VHJ523
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13591-1
Original site URL
Representative seq. ID VHJ523P
(Link to Original site)
Representative DNA sequence
>VHJ523 (VHJ523Q) /CSM/VH/VHJ5-A/VHJ523Q.Seq.d/
ATTGTGATATTACAAACATATAATTTTTTAAAATGCCTTTAAACCTTGTTGCTAGAAAAT
CATTAAGAGATAATGAAGAACACTTAAATAAAGCACATGAAGAAATCAAAAATGCTTTAA
ATGGTGAAGAATGGATTATTGAATTTGATTGGGATGCCATTTTCGATAAAGTTGATGAAC
ATGTTAAAAAACAATTAGGTGAAGTATTTTATAAAAATTTATGTCCAAATATTAGTAAAT
GTATTGTAAATGCATCAAAAGATGAATTAACTAAAGAATCAATCATTAACGCAAATACTG
CTAAAAAGATTGTATTAATTGTTAATGAAGATGCCAAGAATTCATCCTATTGGAAGTATG
CATTTAATGGTGGTCAATTAAATCTTTTATTCAAGAAAGGTTGTAATAATATTACTGAAG
CTGGTAATTTCGAATTATATAAAGTGATTCCAAGTGAAGGTGCTTATAGTTTACCAACTC
GTCTTAATATGAAAAAGAATCAAGAAAGATTTGAACTTGCATTCGAAAGAATTAAAGTAG
TTACCAGTAGAGATTGGTCATTTGATGAAGCATCAATGGAAACTGTTTATCCAACTGCTT
TTGAACATGAAAGTCAACGTGAACAATTTGGTACTACATTXXXXXXXXXXATCNCCTTTA
AATCAATTTGTAANATNTCTGATAATGCCAATTCGATTTCATTAAAGTCCTTCCAGTACC
AGGTGTTTTCTCATTAGCTGCTAAAATCAATTTGAAAGAGANCCAAGAGAAATTCGATAC
CGCTTTTGAAAGAATTAAAGAGGTCACTAAAGTAGATTGGTCCTATGATGAGCAATCATT
GGAAACTGTTTATCCAGCACTTGAAGAAAGAAATAAAGAAAGAATTGGTGACTTATTCCA
AGAGATTATTAAATATGTCGCTGATAATATCGTTAAACGTTGTAAAGAGGATATGGTTTT
AGAAAGTTTCCTCGAAGCAACTTCAAATGCAAAGATTGTTTTCCGTCACAATGCCAAAGC
AAACGGTTATTGGAATTGGAGTTTTGAAAACAATGATTTAGTAATCACCTTCAAATCAAT
TTGCAATGTTAGTGATAATGCAAACTTTGATTTCATTAAAATTTTACCATCACCAGGTGT
ACTCACTTTAGCCTCTAGAATCAATTTGAGAGAGAATCAAGAGAAAATCAATGAATCTTT
CGAAAAGATTAAAGAAGTCTTGGGTAATGATTGGACTTATGATGAATCTTCAATCGAACA
AGTTTATCCAAAATTAGAAGAAAATAATAAACCACGTGTTGGTGATGTCTTTGCTGAAAT
CATTCGTTACATCAGTCAAAATATCGTTAAAAGATGTAAAGATGATGATATGGTCAAAGA
AGGTTTCGTTGAAGCAACTCAAAATTGTAAAATCGTCTTCCAATTTGTTGAAAAACAAAG
TTCTTATTGGGTTTGGAAATTCGATGGTGGTAATTTAGTCGTATCATTCAAATCAATTTG
TAATACTAGTGATAATGCAAATTTCAATTTGAAGCTCTCCTTTAAAATTAATAAAANAA
sequence update 2002.10.25
Translated Amino Acid sequence
cditni*FFKMPLNLVARKSLRDNEEHLNKAHEEIKNALNGEEWIIEFDWDAIFDKVDEH
VKKQLGEVFYKNLCPNISKCIVNASKDELTKESIINANTAKKIVLIVNEDAKNSSYWKYA
FNGGQLNLLFKKGCNNITEAGNFELYKVIPSEGAYSLPTRLNMKKNQERFELAFERIKVV
TSRDWSFDEASMETVYPTAFEHESQREQFGTT---

---IXFKSICXXSDNANSISLKSFQYQVFSH*llksi*krxkrnsipllkelkrslk*ig
pmmsnhwklfiqhlkkeikkelvtyskrllnmsliislnvvkriwf*kvsskqlqmqrlf
svtmpkqtvigigvlktmi**spsnqfamlvimqtlislkfyhhqvysl*plesi*erik
rksmnlskrlkkswvmiglmmnlqsnkfiqn*kkiinhvlvmsllksfvtsvkislkdvk
mmiwskkvslkqlkivksssnllknkvligfgnsmvvi*syhsnqfvilvimqisi*ssp
lklikx


Translated Amino Acid sequence (All Frames)
Frame A:
ivilqtynflkcl*tlllenh*eimknt*ikhmkkskml*mvkngllnligmpfsiklmn
mlknn*vkyfikiyvqilvnvl*mhqkmn*lknqsltqillkrly*llmkmprihpigsm
hlmvvn*ifysrkvviillklvisnyik*fqvkvlivyqlvli*krikkdlnlhskelk*
lpveighlmkhqwklfiqlllnmkvnvnnlvlh---

---IXFKSICXXSDNANSISLKSFQYQVFSH*llksi*krxkrnsipllkelkrslk*ig
pmmsnhwklfiqhlkkeikkelvtyskrllnmsliislnvvkriwf*kvsskqlqmqrlf
svtmpkqtvigigvlktmi**spsnqfamlvimqtlislkfyhhqvysl*plesi*erik
rksmnlskrlkkswvmiglmmnlqsnkfiqn*kkiinhvlvmsllksfvtsvkislkdvk
mmiwskkvslkqlkivksssnllknkvligfgnsmvvi*syhsnqfvilvimqisi*ssp
lklikx

Frame B:
l*yykhiif*nafkpcc*kiikr**rtlk*st*rnqkcfkw*rmdy*i*lgchfr*s**t
c*ktir*sil*kfmsky**myckcikr*in*rinh*rkyc*kdcinc**rcqefillevc
i*wwsiksfiqerl**yy*sw*frii*sdsk*rcl*ftnss*yekesrki*tcirkn*ss
yq*rlvi**singnclsncf*t*kst*tiwyyi---

---splnqfvxxlimpirfh*spsstrcflisc*nqferxpreiryrf*kn*rgh*srlv
l**aiignclsst*rkk*rknw*liprdy*icr**yr*tl*rgygfrkfprsnfkckdcf
psqcqskrllelef*kq*fsnhlqinlqc***ckl*fh*nftitrcthfsl*nqferesr
enq*ifrkd*rslg**ldl**ifnrtslskirrk**ttcw*clc*nhslhqskyr*km*r
**ygqrrfr*snskl*nrlpic*ktkfllgleirww*fsriiqinl*y***ckfqfeall
*n**x

Frame C:
cditni*FFKMPLNLVARKSLRDNEEHLNKAHEEIKNALNGEEWIIEFDWDAIFDKVDEH
VKKQLGEVFYKNLCPNISKCIVNASKDELTKESIINANTAKKIVLIVNEDAKNSSYWKYA
FNGGQLNLLFKKGCNNITEAGNFELYKVIPSEGAYSLPTRLNMKKNQERFELAFERIKVV
TSRDWSFDEASMETVYPTAFEHESQREQFGTT---

---xl*inl*xx**cqfdfikvlpvpgvfslaakinlkexqekfdtaferikevtkvdws
ydeqsletvypaleernkerigdlfqeiikyvadnivkrckedmvlesfleatsnakivf
rhnakangywnwsfenndlvitfksicnvsdnanfdfikilpspgvltlasrinlrenqe
kinesfekikevlgndwtydessieqvypkleennkprvgdvfaeiiryisqnivkrckd
ddmvkegfveatqnckivfqfvekqssywvwkfdggnlvvsfksicntsdnanfnlklsf
kinkx

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHJ523 (VHJ523Q) /CSM/VH/VHJ5-A/VHJ523Q.Seq.d/ 3001 0.0
VHA662 (VHA662Q) /CSM/VH/VHA6-C/VHA662Q.Seq.d/ 1715 0.0
VHP414 (VHP414Q) /CSM/VH/VHP4-A/VHP414Q.Seq.d/ 1703 0.0
VFE124 (VFE124Q) /CSM/VF/VFE1-A/VFE124Q.Seq.d/ 1697 0.0
VHC489 (VHC489Q) /CSM/VH/VHC4-D/VHC489Q.Seq.d/ 1691 0.0
VHA337 (VHA337Q) /CSM/VH/VHA3-B/VHA337Q.Seq.d/ 1687 0.0
VHK896 (VHK896Q) /CSM/VH/VHK8-D/VHK896Q.Seq.d/ 1679 0.0
VHJ560 (VHJ560Q) /CSM/VH/VHJ5-C/VHJ560Q.Seq.d/ 1679 0.0
VHP470 (VHP470Q) /CSM/VH/VHP4-C/VHP470Q.Seq.d/ 1677 0.0
VHC827 (VHC827Q) /CSM/VH/VHC8-B/VHC827Q.Seq.d/ 1675 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ442531) Dictyostelium discoideum cDNA clone:ddv50m05, 3' ... 1772 0.0 1
(BJ443457) Dictyostelium discoideum cDNA clone:ddv52p24, 3' ... 1679 0.0 1
(BJ436501) Dictyostelium discoideum cDNA clone:ddv31j09, 3' ... 1655 0.0 2
(BJ442583) Dictyostelium discoideum cDNA clone:ddv50g12, 3' ... 1645 0.0 2
(BJ445762) Dictyostelium discoideum cDNA clone:ddv60f16, 3' ... 1631 0.0 2
(BJ442697) Dictyostelium discoideum cDNA clone:ddv50o17, 3' ... 1628 0.0 2
(BJ442656) Dictyostelium discoideum cDNA clone:ddv50g15, 3' ... 1628 0.0 3
(BJ445760) Dictyostelium discoideum cDNA clone:ddv60e18, 3' ... 1622 0.0 2
(BJ439120) Dictyostelium discoideum cDNA clone:ddv39b17, 3' ... 1614 0.0 1
(BJ438855) Dictyostelium discoideum cDNA clone:ddv38n15, 3' ... 1596 0.0 4
dna update 2008.11.18
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC117081_29(AC117081|pid:none) Dictyostelium discoideum chromoso... 164 1e-38
AC117081_21(AC117081|pid:none) Dictyostelium discoideum chromoso... 163 1e-38
AL844502_159(AL844502|pid:none) Plasmodium falciparum 3D7 chromo... 44 0.012
(P43040) RecName: Full=Uncharacterized protein MCAP_0005; AltNam... 40 0.18
AE017245_484(AE017245|pid:none) Mycoplasma synoviae 53, complete... 39 0.52
CP001581_3540(CP001581|pid:none) Clostridium botulinum A2 str. K... 37 1.5
AY587609_1(AY587609|pid:none) Ascaridia galli lipid binding prot... 37 2.0
CP000383_328(CP000383|pid:none) Cytophaga hutchinsonii ATCC 3340... 37 2.0
AF206632_1(AF206632|pid:none) Plasmodium falciparum isolate FCC1... 37 2.0
CP001146_1446(CP001146|pid:none) Dictyoglomus thermophilum H-6-1... 37 2.0
protein update 2009. 7.14
PSORT

psg: 0.26 gvh: 0.20 alm: 0.51 top: 0.53 tms: 0.00 mit: 0.39 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: nuclear
32.0 %: cytoplasmic
8.0 %: cytoskeletal
8.0 %: mitochondrial

>> prediction for VHJ523 is nuc

5' end seq. ID VHJ523F
5' end seq.
>VHJ523F.Seq
ATTGTGATATTACAAACATATAATTTTTTAAAATGCCTTTAAACCTTGTTGCTAGAAAAT
CATTAAGAGATAATGAAGAACACTTAAATAAAGCACATGAAGAAATCAAAAATGCTTTAA
ATGGTGAAGAATGGATTATTGAATTTGATTGGGATGCCATTTTCGATAAAGTTGATGAAC
ATGTTAAAAAACAATTAGGTGAAGTATTTTATAAAAATTTATGTCCAAATATTAGTAAAT
GTATTGTAAATGCATCAAAAGATGAATTAACTAAAGAATCAATCATTAACGCAAATACTG
CTAAAAAGATTGTATTAATTGTTAATGAAGATGCCAAGAATTCATCCTATTGGAAGTATG
CATTTAATGGTGGTCAATTAAATCTTTTATTCAAGAAAGGTTGTAATAATATTACTGAAG
CTGGTAATTTCGAATTATATAAAGTGATTCCAAGTGAAGGTGCTTATAGTTTACCAACTC
GTCTTAATATGAAAAAGAATCAAGAAAGATTTGAACTTGCATTCGAAAGAATTAAAGTAG
TTACCAGTAGAGATTGGTCATTTGATGAAGCATCAATGGAAACTGTTTATCCAACTGCTT
TTGAACATGAAAGTCAACGTGAACAATTTGGTACTACATTNNNNNNNNNN
Length of 5' end seq. 650
3' end seq. ID VHJ523Z
3' end seq.
>VHJ523Z.Seq
NNNNNNNNNNATCNCCTTTAAATCAATTTGTAANATNTCTGATAATGCCAATTCGATTTC
ATTAAAGTCCTTCCAGTACCAGGTGTTTTCTCATTAGCTGCTAAAATCAATTTGAAAGAG
ANCCAAGAGAAATTCGATACCGCTTTTGAAAGAATTAAAGAGGTCACTAAAGTAGATTGG
TCCTATGATGAGCAATCATTGGAAACTGTTTATCCAGCACTTGAAGAAAGAAATAAAGAA
AGAATTGGTGACTTATTCCAAGAGATTATTAAATATGTCGCTGATAATATCGTTAAACGT
TGTAAAGAGGATATGGTTTTAGAAAGTTTCCTCGAAGCAACTTCAAATGCAAAGATTGTT
TTCCGTCACAATGCCAAAGCAAACGGTTATTGGAATTGGAGTTTTGAAAACAATGATTTA
GTAATCACCTTCAAATCAATTTGCAATGTTAGTGATAATGCAAACTTTGATTTCATTAAA
ATTTTACCATCACCAGGTGTACTCACTTTAGCCTCTAGAATCAATTTGAGAGAGAATCAA
GAGAAAATCAATGAATCTTTCGAAAAGATTAAAGAAGTCTTGGGTAATGATTGGACTTAT
GATGAATCTTCAATCGAACAAGTTTATCCAAAATTAGAAGAAAATAATAAACCACGTGTT
GGTGATGTCTTTGCTGAAATCATTCGTTACATCAGTCAAAATATCGTTAAAAGATGTAAA
GATGATGATATGGTCAAAGAAGGTTTCGTTGAAGCAACTCAAAATTGTAAAATCGTCTTC
CAATTTGTTGAAAAACAAAGTTCTTATTGGGTTTGGAAATTCGATGGTGGTAATTTAGTC
GTATCATTCAAATCAATTTGTAATACTAGTGATAATGCAAATTTCAATTTGAAGCTCTCC
TTTAAAATTAATAAAANAA
Length of 3' end seq. 919
Connected seq. ID VHJ523P
Connected seq.
>VHJ523P.Seq
ATTGTGATATTACAAACATATAATTTTTTAAAATGCCTTTAAACCTTGTTGCTAGAAAAT
CATTAAGAGATAATGAAGAACACTTAAATAAAGCACATGAAGAAATCAAAAATGCTTTAA
ATGGTGAAGAATGGATTATTGAATTTGATTGGGATGCCATTTTCGATAAAGTTGATGAAC
ATGTTAAAAAACAATTAGGTGAAGTATTTTATAAAAATTTATGTCCAAATATTAGTAAAT
GTATTGTAAATGCATCAAAAGATGAATTAACTAAAGAATCAATCATTAACGCAAATACTG
CTAAAAAGATTGTATTAATTGTTAATGAAGATGCCAAGAATTCATCCTATTGGAAGTATG
CATTTAATGGTGGTCAATTAAATCTTTTATTCAAGAAAGGTTGTAATAATATTACTGAAG
CTGGTAATTTCGAATTATATAAAGTGATTCCAAGTGAAGGTGCTTATAGTTTACCAACTC
GTCTTAATATGAAAAAGAATCAAGAAAGATTTGAACTTGCATTCGAAAGAATTAAAGTAG
TTACCAGTAGAGATTGGTCATTTGATGAAGCATCAATGGAAACTGTTTATCCAACTGCTT
TTGAACATGAAAGTCAACGTGAACAATTTGGTACTACATT----------ATCNCCTTTA
AATCAATTTGTAANATNTCTGATAATGCCAATTCGATTTCATTAAAGTCCTTCCAGTACC
AGGTGTTTTCTCATTAGCTGCTAAAATCAATTTGAAAGAGANCCAAGAGAAATTCGATAC
CGCTTTTGAAAGAATTAAAGAGGTCACTAAAGTAGATTGGTCCTATGATGAGCAATCATT
GGAAACTGTTTATCCAGCACTTGAAGAAAGAAATAAAGAAAGAATTGGTGACTTATTCCA
AGAGATTATTAAATATGTCGCTGATAATATCGTTAAACGTTGTAAAGAGGATATGGTTTT
AGAAAGTTTCCTCGAAGCAACTTCAAATGCAAAGATTGTTTTCCGTCACAATGCCAAAGC
AAACGGTTATTGGAATTGGAGTTTTGAAAACAATGATTTAGTAATCACCTTCAAATCAAT
TTGCAATGTTAGTGATAATGCAAACTTTGATTTCATTAAAATTTTACCATCACCAGGTGT
ACTCACTTTAGCCTCTAGAATCAATTTGAGAGAGAATCAAGAGAAAATCAATGAATCTTT
CGAAAAGATTAAAGAAGTCTTGGGTAATGATTGGACTTATGATGAATCTTCAATCGAACA
AGTTTATCCAAAATTAGAAGAAAATAATAAACCACGTGTTGGTGATGTCTTTGCTGAAAT
CATTCGTTACATCAGTCAAAATATCGTTAAAAGATGTAAAGATGATGATATGGTCAAAGA
AGGTTTCGTTGAAGCAACTCAAAATTGTAAAATCGTCTTCCAATTTGTTGAAAAACAAAG
TTCTTATTGGGTTTGGAAATTCGATGGTGGTAATTTAGTCGTATCATTCAAATCAATTTG
TAATACTAGTGATAATGCAAATTTCAATTTGAAGCTCTCCTTTAAAATTAATAAAANAA
Length of connected seq. 1549
Full length Seq ID -
Full length Seq. -
Length of full length seq. -