>VHJ363 (VHJ363Q) /CSM/VH/VHJ3-C/VHJ363Q.Seq.d/
XXXXXXXXXXTTAGTTCCGATCATAGATTCAATGAAAAATGGACCTATGGTCAACCAGAA
ACCAATCGTGCAGCAATTAAAGAATCCAAATTAATCGCCAATCCAGGTTGTTATGCAACT
GGTATGTTTTTAACATTGAAGCCATTTGTCAATGATTTAGTAACACCACCATNTTGTTTT
GGTATTTCAGGTTATTCCGGTGCTGGTAGTAAACCATNTGAAAAGAATGATCCAACACGT
NTAAGTGATAATATCTTACCTTACAAATTGGTTCAACATACTCATGAACTTGAGGTTAGT
CATCAATTGGGTAGTCCAATNTATTTCATGCCACATGTTGGTCAATTNTTTCAAGGTATT
ACCCTTACAATNTCAATGGAACTCAAATATCCAATGACCAAAGAACAAGTGGTCGAACGT
TATCAAAAATTCTATCAAAATGAACCGTTAATTAAAATCGATAAAGATGGTATTCCAGAG
GTTAAATCAAATAGTGGTAAACATACTGTTACAAT

---SSDHRFNEKWTYGQPETNRAAIKESKLIANPGCYATGMFLTLKPFVNDLVTPPXCFG
ISGYSGAGSKPXEKNDPTRXSDNILPYKLVQHTHELEVSHQLGSPXYFMPHVGQXFQGIT
LTXSMELKYPMTKEQVVERYQKFYQNEPLIKIDKDGIPEVKSNSGKHTVT

Frame A:
---*frs*iq*kmdlwstrnqscsn*riqinrqsrllcnwyvfnieaicq*fsnttxlfw
yfrlfrcw**tx*ke*sntxk**yltlqigstys*t*g*ssig*snxfhatcwsixsryy
pynxngtqisndqrtsgrtlskilsk*tvn*nr*rwysrg*ik*w*tycyn


Frame B:
---SSDHRFNEKWTYGQPETNRAAIKESKLIANPGCYATGMFLTLKPFVNDLVTPPXCFG
ISGYSGAGSKPXEKNDPTRXSDNILPYKLVQHTHELEVSHQLGSPXYFMPHVGQXFQGIT
LTXSMELKYPMTKEQVVERYQKFYQNEPLIKIDKDGIPEVKSNSGKHTVT


Frame C:
---vpiidsmkngpmvnqkpivqqlknpn*spiqvvmqlvcf*h*shlsmi**hhhxvlv
fqvipvlvvnhxkrmiqhv*viisyltnwfnilmnlrlvinwvvqxischmlvnxfkvlp
lqxqwnsniq*pknkwsnviknsikmnr*lksikmvfqrlnqivvnillq

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHJ741 (VHJ741Q) /CSM/VH/VHJ7-B/VHJ741Q.Seq.d/                        965   0.0
VHJ479 (VHJ479Q) /CSM/VH/VHJ4-D/VHJ479Q.Seq.d/                        965   0.0
VHJ363 (VHJ363Q) /CSM/VH/VHJ3-C/VHJ363Q.Seq.d/                        965   0.0
VHI108 (VHI108Q) /CSM/VH/VHI1-A/VHI108Q.Seq.d/                        965   0.0
SHK272 (SHK272Q) /CSM/SH/SHK2-C/SHK272Q.Seq.d/                        965   0.0
CHM268 (CHM268Q) /CSM/CH/CHM2-C/CHM268Q.Seq.d/                        965   0.0
AHE809 (AHE809Q) /CSM/AH/AHE8-A/AHE809Q.Seq.d/                        965   0.0
AHE324 (AHE324Q) /CSM/AH/AHE3-A/AHE324Q.Seq.d/                        965   0.0
AHN867 (AHN867Q) /CSM/AH/AHN8-C/AHN867Q.Seq.d/                        961   0.0
VHK445 (VHK445Q) /CSM/VH/VHK4-B/VHK445Q.Seq.d/                        954   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL425928|AL425928.1 clone BA0AB008G09 of library BA0AB from strain CLIB 210 of  Kluyveromyces lactis.    54   0.002  1
AC108850|AC108850.2 Mus musculus clone RP24-85N11, WORKING DRAFT SEQUENCE, 7 unordered pieces.    44   1.9    1
AC100895|AC100895.2 Mus musculus clone RP23-69G5, LOW-PASS SEQUENCE SAMPLING.    44   1.9    1
AC125310|AC125310.2 Mus musculus chromosome UNK clone RP24-548E5, WORKING DRAFT SEQUENCE, 10 unordered pieces.    44   1.9    1
AC107800|AC107800.4 Mus musculus clone RP23-28K16, WORKING DRAFT SEQUENCE, 14 unordered pieces.    44   1.9    1
AC100561|AC100561.6 Mus musculus chromosome 1 clone RP23-154C4 map 1, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces.    44   1.9    1
AC107834|AC107834.11 Mus musculus chromosome 1 clone RP23-251L12 map 1, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    44   1.9    1
AC138190|AC138190.1 Mus musculus clone RP23-224G5, LOW-PASS SEQUENCE SAMPLING.    36   2.0    3
AC120816|AC120816.4 Rattus norvegicus clone CH230-347G6, WORKING DRAFT SEQUENCE, 4 unordered pieces.    38   2.1    6
BZ235549|BZ235549.1 CH230-251O21.TJ CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-251O21, DNA sequence.    40   2.5    2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013598_2615(AE013598|pid:none) Xanthomonas oryzae pv. oryzae K...   180   2e-44
CP000967_1954(CP000967|pid:none) Xanthomonas oryzae pv. oryzae P...   177   1e-43
(Q2P2F6) RecName: Full=N-acetyl-gamma-glutamyl-phosphate reducta...   177   1e-43
(Q3BSI7) RecName: Full=N-acetyl-gamma-glutamyl-phosphate reducta...   177   1e-43
(B0RS54) RecName: Full=N-acetyl-gamma-glutamyl-phosphate reducta...   169   5e-41
(B2FMD7) RecName: Full=N-acetyl-gamma-glutamyl-phosphate reducta...   166   3e-40
(Q4UVI5) RecName: Full=N-acetyl-gamma-glutamyl-phosphate reducta...   166   4e-40
CP001111_2719(CP001111|pid:none) Stenotrophomonas maltophilia R5...   165   7e-40
CP000941_285(CP000941|pid:none) Xylella fastidiosa M12, complete...   161   1e-38
CU928175_343(CU928175|pid:none) Zygosaccharomyces rouxii strain ...   157   1e-37

 psg: 0.67  gvh: 0.58  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: mitochondrial
	 28.0 %: nuclear
	 24.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for VHJ363 is mit

>VHJ363Z.Seq
NNNNNNNNNNTTAGTTCCGATCATAGATTCAATGAAAAATGGACCTATGGTCAACCAGAA
ACCAATCGTGCAGCAATTAAAGAATCCAAATTAATCGCCAATCCAGGTTGTTATGCAACT
GGTATGTTTTTAACATTGAAGCCATTTGTCAATGATTTAGTAACACCACCATNTTGTTTT
GGTATTTCAGGTTATTCCGGTGCTGGTAGTAAACCATNTGAAAAGAATGATCCAACACGT
NTAAGTGATAATATCTTACCTTACAAATTGGTTCAACATACTCATGAACTTGAGGTTAGT
CATCAATTGGGTAGTCCAATNTATTTCATGCCACATGTTGGTCAATTNTTTCAAGGTATT
ACCCTTACAATNTCAATGGAACTCAAATATCCAATGACCAAAGAACAAGTGGTCGAACGT
TATCAAAAATTCTATCAAAATGAACCGTTAATTAAAATCGATAAAGATGGTATTCCAGAG
GTTAAATCAAATAGTGGTAAACATACTGTTACAAT