AFO308
Library AF
(Link to library)
Clone ID AFO308
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15568-1
Original site URL
Representative seq. ID AFO308F
(Link to Original site)
Representative DNA sequence
>AFO308 (AFO308Q) /CSM/AF/AFO3-A/AFO308Q.Seq.d/
ACAACAACAGCAACAACAGCAACAACAACAGGCAATTCAACAACAGCAATTAAAAGAACA
GCAATTAAGAGAACAGCAGCAACAACAGCAACAACAACAATTAAGAGAACAGCAATTAAG
AGAACAACAATTAAGAGAGCAACAATTTAGGGAGCAACAATTTAGGGAACAACAACAATT
TCAACAACAAAATCGTCACAATTATCAAAATGAACAAGATAATTCGCAACAACAACAACA
ACAACAATATCAACCTTTACAACCACCACCAGTCATACCCCAAAACTATCAACAACCATC
ACTTCAAACTCTACAAGCTGCACAAGCTATTCAATCGATGCAATCAATGCACCAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACACCCACA
ACTCTNCATTCAGCAACAAGCATTATTACAGCAACAACAACTACAACAACAACAACAACA
ACAGCAACAACAACAACAACATCAACAACAACAGCAACAACAACATCAACAACAACAAAC
ACAGNANGCTATTACTTCACCATTATTGAATGCAAGTCCACCAATXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence
QQQQQQQQQQAIQQQQLKEQQLREQQQQQQQQQLREQQLREQQLREQQFREQQFREQQQF
QQQNRHNYQNEQDNSQQQQQQQYQPLQPPPVIPQNYQQPSLQTLQAAQAIQSMQSMHQQQ
QQQQQQQQQQQQQQQQQHPQLXIQQQALLQQQQLQQQQQQQQQQQQHQQQQQQQHQQQQT
QXAITSPLLNASPP---


Translated Amino Acid sequence (All Frames)
Frame A:
tttattatttgnsttaikrtaikrtaattatttikrtaikrttikrati*gati*gttti
sttkssqlsk*tr*fattttttistfttttshtpklsttitsnstsctsysidainaptt
ttttttttttttttttttpttlhsatsiitattttttttttatttttstttatttstttn
txxyyftiieckst---


Frame B:
QQQQQQQQQQAIQQQQLKEQQLREQQQQQQQQQLREQQLREQQLREQQFREQQFREQQQF
QQQNRHNYQNEQDNSQQQQQQQYQPLQPPPVIPQNYQQPSLQTLQAAQAIQSMQSMHQQQ
QQQQQQQQQQQQQQQQQHPQLXIQQQALLQQQQLQQQQQQQQQQQQHQQQQQQQHQQQQT
QXAITSPLLNASPP---


Frame C:
nnsnnsnnnrqfnnsn*knsn*enssnnsnnnn*ensn*ennn*esnnlgsnnlgnnnnf
nnkivtiikmnkiirnnnnnnninlynhhqsypktinnhhfklyklhklfnrcnqctnnn
nnnnnnnnnnnnnnnnnthnsxfsnkhyysnnnynnnnnnsnnnnninnnsnnninnnkh
xxlllhhy*mqvhq---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFC816 (SFC816Q) /CSM/SF/SFC8-A/SFC816Q.Seq.d/ 208 7e-53
AFO308 (AFO308Q) /CSM/AF/AFO3-A/AFO308Q.Seq.d/ 208 7e-53
AFJ756 (AFJ756Q) /CSM/AF/AFJ7-C/AFJ756Q.Seq.d/ 208 7e-53
AFE350 (AFE350Q) /CSM/AF/AFE3-C/AFE350Q.Seq.d/ 208 7e-53
VSF828 (VSF828Q) /CSM/VS/VSF8-B/VSF828Q.Seq.d/ 109 5e-23
VFE854 (VFE854Q) /CSM/VF/VFE8-C/VFE854Q.Seq.d/ 76 7e-13
SLF367 (SLF367Q) /CSM/SL/SLF3-C/SLF367Q.Seq.d/ 76 7e-13
CHR625 (CHR625Q) /CSM/CH/CHR6-B/CHR625Q.Seq.d/ 72 1e-11
CFB820 (CFB820Q) /CSM/CF/CFB8-A/CFB820Q.Seq.d/ 50 4e-05
AFD511 (AFD511Q) /CSM/AF/AFD5-A/AFD511Q.Seq.d/ 48 2e-04

own update 2002. 9.17
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BG046482|BG046482.1 saa54g06.y1 Gm-c1060 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1060-684 5' similar to TR:O04336 O04336 ELICITOR RESPONSE ELEMENT BINDING PROTEIN WRKY3 ISOLOG. ;, mRNA sequence. 48 0.12 1
BM094322|BM094322.1 saj14a08.y1 Gm-c1066 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1066-2703 5' similar to TR:O04336 O04336 ELICITOR RESPONSE ELEMENT BINDING PROTEIN WRKY3 ISOLOG. ;, mRNA sequence. 48 0.12 1
AI973570|AI973570.1 sc88e12.y1 Gm-c1019 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1019-455 5' similar to TR:O04336 O04336 ELICITOR RESPONSE ELEMENT BINDING PROTEIN WRKY3 ISOLOG. ;, mRNA sequence. 48 0.12 1
AL627234|AL627234.8 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone RP11-539O4. 42 7.7 1
AL050302|AL050302.2 Homo sapiens chromosome 21 BAC RGB62L20. 42 7.7 1
BX323076|BX323076.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-106A24. 42 7.7 1
AP005213|AP005213.3 Homo sapiens genomic DNA, chromosome 18 clone:RP11-97O24, complete sequence. 42 7.7 1
AP006565|AP006565.1 Homo sapiens genomic DNA, chromosome 18 clone:RP11-1157N02_B, complete sequence. 42 7.7 1
AL359312|AL359312.18 Human DNA sequence from clone RP11-216E19 on chromosome 18. 42 7.7 1
AL163203|AL163203.1 Homo sapiens genomic DNA, chromosome 21q, section 2/105. 42 7.7 1
dna update 2003. 9.15
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 165,688,684
protein update 2009. 4.26
PSORT

psg: 0.62 gvh: 0.08 alm: 0.60 top: 0.53 tms: 0.00 mit: 0.24 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: nuclear
16.0 %: cytoplasmic
12.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: vacuolar
4.0 %: plasma membrane

>> prediction for AFO308 is nuc

5' end seq. ID AFO308F
5' end seq.
>AFO308F.Seq
ACAACAACAGCAACAACAGCAACAACAACAGGCAATTCAACAACAGCAATTAAAAGAACA
GCAATTAAGAGAACAGCAGCAACAACAGCAACAACAACAATTAAGAGAACAGCAATTAAG
AGAACAACAATTAAGAGAGCAACAATTTAGGGAGCAACAATTTAGGGAACAACAACAATT
TCAACAACAAAATCGTCACAATTATCAAAATGAACAAGATAATTCGCAACAACAACAACA
ACAACAATATCAACCTTTACAACCACCACCAGTCATACCCCAAAACTATCAACAACCATC
ACTTCAAACTCTACAAGCTGCACAAGCTATTCAATCGATGCAATCAATGCACCAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACACCCACA
ACTCTNCATTCAGCAACAAGCATTATTACAGCAACAACAACTACAACAACAACAACAACA
ACAGCAACAACAACAACAACATCAACAACAACAGCAACAACAACATCAACAACAACAAAC
ACAGNANGCTATTACTTCACCATTATTGAATGCAAGTCCACCAAT----------
Length of 5' end seq. 585
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -