NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHJ233
Library VH
(Link to library)
Clone ID VHJ233
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16440-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VHJ233 (VHJ233Q) /CSM/VH/VHJ2-B/VHJ233Q.Seq.d/
TGTTTATATAAACAAATTGNAGGAAATTATAAAATGAAGATTTCATCTATTTTATTTATT
TTTATAGCGATTATTGTTGGCTTAGCACTTTCACAANATACTATTCCTACTTATAAGCAA
AACAGCATTAATTGGAAGCAATTTCAACCATTATATACAAATAAAGATGATTATGTATTA
ATTGTAGATACAAGATCAAAGAATGTTTTAAAAAGATCAACAAATGGTGGTATTGATTGG
TCATCAAATGTACTTGATAAACAAGGAAATATTATTTATGGTAATGCAGGATATTATCAA
AGAGATGATAATATTATGGTTGTAAATTTCCCATCTTATGGAAAAACCCAAATTTCAGTA
TCAAATGATGCAGGTCAAACATTTTCAACCTCAGCAGTTTTTCCACATAAAGTTGTATCA
GTTTCACCACATTTAGATATTGAGGGTTTAGTGATTGCACACTTCCGATAGTTTCATTTT
AATTAGTGAAGATTTTGGTTTAACATGGAACAATGCATCATCCAATGGTGATGTTTTATT
CACACCAGGTGGTTCAAGCTTTXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
CLYKQIXGNYKMKISSILFIFIAIIVGLALSQXTIPTYKQNSINWKQFQPLYTNKDDYVL
IVDTRSKNVLKRSTNGGIDWSSNVLDKQGNIIYGNAGYYQRDDNIMVVNFPSYGKTQISV
SNDAGQTFSTSAVFPHKVVSVSPHLDIEGLVIAHFR*fhfn**rfwfnmeqciiqw*cfi
htrwfkl---
Translated Amino Acid sequence (All Frames) 
Frame A:
CLYKQIXGNYKMKISSILFIFIAIIVGLALSQXTIPTYKQNSINWKQFQPLYTNKDDYVL
IVDTRSKNVLKRSTNGGIDWSSNVLDKQGNIIYGNAGYYQRDDNIMVVNFPSYGKTQISV
SNDAGQTFSTSAVFPHKVVSVSPHLDIEGLVIAHFR*fhfn**rfwfnmeqciiqw*cfi
htrwfkl---


Frame B:
vyinklxeiik*rfhlfylfl*rllla*hfhxilfllisktaligsnfnhyiqikmimy*
l*iqdqrmf*kdqqmvvlighqmylinkeilfmvmqdiikemiilwl*ishlmekpkfqy
qmmqvkhfqpqqffhiklyqfhhi*ilrv**lhtsdsfilisedfgltwnnassngdvlf
tpggss---


Frame C:
fi*tnxrkl*nedfiyfiyfysdycwlstftxyysyl*akqh*leaistiiyk*r*lcin
crykikecfkkinkwwy*lvikct**trkyylw*crilskr**yygckfpilwknpnfsi
k*crsnifnlssfst*scisfttfry*gfsdctlpivsf*lvkilv*hgtmhhpmvmfys
hqvvqa---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHJ233 (VHJ233Q) /CSM/VH/VHJ2-B/VHJ233Q.Seq.d/                       1102   0.0
VHQ405 (VHQ405Q) /CSM/VH/VHQ4-A/VHQ405Q.Seq.d/                       1063   0.0
VHQ343 (VHQ343Q) /CSM/VH/VHQ3-B/VHQ343Q.Seq.d/                       1063   0.0
VHQ176 (VHQ176Q) /CSM/VH/VHQ1-D/VHQ176Q.Seq.d/                       1063   0.0
VHQ157 (VHQ157Q) /CSM/VH/VHQ1-C/VHQ157Q.Seq.d/                       1063   0.0
VHP179 (VHP179Q) /CSM/VH/VHP1-D/VHP179Q.Seq.d/                       1063   0.0
VHP137 (VHP137Q) /CSM/VH/VHP1-B/VHP137Q.Seq.d/                       1063   0.0
VHO888 (VHO888Q) /CSM/VH/VHO8-D/VHO888Q.Seq.d/                       1063   0.0
VHO514 (VHO514Q) /CSM/VH/VHO5-A/VHO514Q.Seq.d/                       1063   0.0
VHO439 (VHO439Q) /CSM/VH/VHO4-B/VHO439Q.Seq.d/                       1063   0.0
own update 2003. 1. 1
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ423447) Dictyostelium discoideum cDNA clone:ddv49a10, 5' ...  1102   0.0    1
(BJ427852) Dictyostelium discoideum cDNA clone:ddv63g19, 5' ...   892   0.0    2
(BJ427751) Dictyostelium discoideum cDNA clone:ddv63a15, 5' ...   892   0.0    2
(BJ427702) Dictyostelium discoideum cDNA clone:ddv63f11, 5' ...   892   0.0    2
(BJ427646) Dictyostelium discoideum cDNA clone:ddv63j02, 5' ...   892   0.0    2
(BJ427541) Dictyostelium discoideum cDNA clone:ddv62b21, 5' ...   892   0.0    3
(BJ427438) Dictyostelium discoideum cDNA clone:ddv62m10, 5' ...   892   0.0    2
(BJ427416) Dictyostelium discoideum cDNA clone:ddv62i10, 5' ...   892   0.0    3
(BJ427282) Dictyostelium discoideum cDNA clone:ddv61m19, 5' ...   892   0.0    2
(BJ427121) Dictyostelium discoideum cDNA clone:ddv61i09, 5' ...   892   0.0    2
dna update 2008.11.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU719193_1(EU719193|pid:none) Aspergillus niger strain CBS 120.4...    35   1.9
CU466930_788(CU466930|pid:none) Candidatus Cloacamonas acidamino...    34   3.2
(Q8TS91) RecName: Full=Imidazole glycerol phosphate synthase sub...    33   4.2
AF191043_1(AF191043|pid:none) Porcine lymphotropic herpesvirus 2...    33   7.1
AY170314_6(AY170314|pid:none) Porcine lymphotropic herpesvirus 2...    33   7.1
CR940348_871(CR940348|pid:none) Theileria annulata strain Ankara...    32   9.3
protein update 2009. 3.12
PSORT 

 psg: 0.84  gvh: 0.69  alm: 0.44  top: 0.40  tms: 0.00  mit: 0.35  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: extracellular, including cell wall
	 20.0 %: nuclear
	 16.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for VHJ233 is exc
5' end seq. ID VHJ233F
5' end seq. 
>VHJ233F.Seq
TGTTTATATAAACAAATTGNAGGAAATTATAAAATGAAGATTTCATCTATTTTATTTATT
TTTATAGCGATTATTGTTGGCTTAGCACTTTCACAANATACTATTCCTACTTATAAGCAA
AACAGCATTAATTGGAAGCAATTTCAACCATTATATACAAATAAAGATGATTATGTATTA
ATTGTAGATACAAGATCAAAGAATGTTTTAAAAAGATCAACAAATGGTGGTATTGATTGG
TCATCAAATGTACTTGATAAACAAGGAAATATTATTTATGGTAATGCAGGATATTATCAA
AGAGATGATAATATTATGGTTGTAAATTTCCCATCTTATGGAAAAACCCAAATTTCAGTA
TCAAATGATGCAGGTCAAACATTTTCAACCTCAGCAGTTTTTCCACATAAAGTTGTATCA
GTTTCACCACATTTAGATATTGAGGGTTTAGTGATTGCACACTTCCGATAGTTTCATTTT
AATTAGTGAAGATTTTGGTTTAACATGGAACAATGCATCATCCAATGGTGATGTTTTATT
CACACCAGGTGGTTCAAGCTTTNNNNNNNNNN
Length of 5' end seq. 572
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -