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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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VHJ228
Library VH
(Link to library)
Clone ID VHJ228
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12248-1
Original site URL
Representative seq. ID VHJ228P
(Link to Original site)
Representative DNA sequence 
>VHJ228 (VHJ228Q) /CSM/VH/VHJ2-B/VHJ228Q.Seq.d/
AAAAAAAAATCAATAAGAAATGTAAGAATATCAAGATATCTAGACACAAATATCTTTCTA
TTTTTTATTTTTATTTTTTTGATCAAAAGATTAAAAGTGATTGAGAAATAAATAAAAATA
AAAATAAAAATAAAAAGATAAAAAAAAAAXXXXXXXXXXAAAAAAAAATCAATAAGAAAT
GTAAGAATATCAAGATATCTAGACACAAATATCTTTCTATTTTTTATTTTTATTTTTTNG
ATCAAAAGATTAAAAGGNATNAGAAATAAATAAAAATAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
kkinkkcknikisrhkylsifyfyffdqkiksd*EINKNKNKNKKIKKK---

---KKKSIRNVRISRYLDTNIFLFFIFIFXIKRLKGXRNK*k*k
Translated Amino Acid sequence (All Frames) 
Frame A:
kkksirnvrisryldtniflffififlikrlkviek*ikikikikr*kk---

---KKKSIRNVRISRYLDTNIFLFFIFIFXIKRLKGXRNK*k*k

Frame B:
kknq*em*eyqdi*tqisfyflflff*skd*k*lrnk*k*k*k*kdkkk---

---kknq*em*eyqdi*tqisfyflflffxskd*kxxeinknk

Frame C:
kkinkkcknikisrhkylsifyfyffdqkiksd*EINKNKNKNKKIKKK---

---kkinkkcknikisrhkylsifyfyfxdqkikrxxk*ikik
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHJ228 (VHJ228Q) /CSM/VH/VHJ2-B/VHJ228Q.Seq.d/                        101   5e-21
own update 2003. 1. 1
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ423472) Dictyostelium discoideum cDNA clone:ddv49g08, 5' ...   101   9e-27  2
(BJ442256) Dictyostelium discoideum cDNA clone:ddv49g08, 3' ...   101   1e-22  2
(AC173420) Bos taurus clone CH240-271M10, WORKING DRAFT SEQU...    40   2.1    2
(AP004286) Homo sapiens genomic DNA, chromosome 8q23, clone:...    44   2.5    1
(AC026827) Homo sapiens chromosome 8, clone RP11-678C14, com...    44   2.5    1
(AC024895) Homo sapiens chromosome 3 clone RP11-368C9, WORKI...    44   2.5    1
(ET037483) MUGQ_CH252P341F24T7_CP635_092 CHORI-252 Vervet Mo...    44   2.5    1
(ET037155) MUGQ_CH252P341E24T7_CP634_092 CHORI-252 Vervet Mo...    44   2.5    1
(EJ738268) 1092961215562 Global-Ocean-Sampling_GS-30-02-01-1...    36   2.9    2
(AC224173) Bos taurus clone CH240-448C22, WORKING DRAFT SEQU...    40   3.4    2
dna update 2008.11.16
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 150,075,159
protein update 2009. 7.14
PSORT 

 psg: 0.25  gvh: 0.43  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.36  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 80.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: cytoplasmic
	  4.0 %: mitochondrial

>> prediction for VHJ228 is nuc
5' end seq. ID VHJ228F
5' end seq. 
>VHJ228F.Seq
AAAAAAAAATCAATAAGAAATGTAAGAATATCAAGATATCTAGACACAAATATCTTTCTA
TTTTTTATTTTTATTTTTTTGATCAAAAGATTAAAAGTGATTGAGAAATAAATAAAAATA
AAAATAAAAATAAAAAGATAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 159
3' end seq. ID VHJ228Z
3' end seq. 
>VHJ228Z.Seq
NNNNNNNNNNAAAAAAAAATCAATAAGAAATGTAAGAATATCAAGATATCTAGACACAAA
TATCTTTCTATTTTTTATTTTTATTTTTTNGATCAAAAGATTAAAAGGNATNAGAAATAA
ATAAAAATAAAAA
Length of 3' end seq. 133
Connected seq. ID VHJ228P
Connected seq. 
>VHJ228P.Seq
AAAAAAAAATCAATAAGAAATGTAAGAATATCAAGATATCTAGACACAAATATCTTTCTA
TTTTTTATTTTTATTTTTTTGATCAAAAGATTAAAAGTGATTGAGAAATAAATAAAAATA
AAAATAAAAATAAAAAGATAAAAAAAAAA----------AAAAAAAAATCAATAAGAAAT
GTAAGAATATCAAGATATCTAGACACAAATATCTTTCTATTTTTTATTTTTATTTTTTNG
ATCAAAAGATTAAAAGGNATNAGAAATAAATAAAAATAAAAA
Length of connected seq. 272
Full length Seq ID -
Full length Seq. -
Length of full length seq. -