>VHJ188 (VHJ188Q) /CSM/VH/VHJ1-D/VHJ188Q.Seq.d/
TTTTTCAAGAGTTTGATTTCCCTGCAGATTTCAATTGTTCTCTTTATGGATTTTGTCAAA
TTGAATCATCCACTTGCTATGGAGTCTACGAAATCGGTAGTGCATGTTCTCAATTATGTG
ATGCTACCACATCCTATTGTGGGCATTGTTCAAGTGAAAATCAAACCTATTGTCATCAAA
TTACAACACTAACCGATGAAACAACTTGTAAATCAAATTCAGCATGTCTTTTACCAAATG
GTGAATATCAATTGGGTGTAACTAAAGAACAATGTGAAAGTTTAGGTCAATGTTCAGATG
GTTGTGGTTATGAATGTAGTGGTTATATTGGTTGTGTCATTGAAAATTCATACAATTCAA
CCGATTGTACAGCTCATACAGGTGCTGTATGGAATCCACAATATGATGTTTGTACATTTG
TTTCTGCAACATCACCATCGACTTGTTCTTCTAATTCTTATAGTTGGATTGATTGTTCAA
GTCATTCACCACATGAATGTTATCCAATCACTTGTTCAGTTCAAAGAGTTCXXXXXXXXX
X

FQEFDFPADFNCSLYGFCQIESSTCYGVYEIGSACSQLCDATTSYCGHCSSENQTYCHQI
TTLTDETTCKSNSACLLPNGEYQLGVTKEQCESLGQCSDGCGYECSGYIGCVIENSYNST
DCTAHTGAVWNPQYDVCTFVSATSPSTCSSNSYSWIDCSSHSPHECYPITCSVQRV---

Frame A:
ffkslislqisivlfmdfvklnhplamestksvvhvlnyvmlphpivgivqvkikpivik
lqh*pmkqlvnqiqhvfyqmvninwv*lknnvkv*vnvqmvvvmnvvvilvvslkihtiq
pivqliqvlygihnmmfvhlflqhhhrlvllilivglivqvihhmnviqslvqfke---


Frame B:
fsrv*fpcrfqlfslwilsn*iihllwslrnr*cmfsim*cyhillwalfk*ksnllssn
yntnr*nnl*ikfsmsftkw*isigcn*rtm*kfrsmfrwlwl*m*wlywlch*kfiqfn
rlyssyrccmesti*clyicfcnitidlff*fl*ld*lfksftt*mlsnhlfssks---


Frame C:
FQEFDFPADFNCSLYGFCQIESSTCYGVYEIGSACSQLCDATTSYCGHCSSENQTYCHQI
TTLTDETTCKSNSACLLPNGEYQLGVTKEQCESLGQCSDGCGYECSGYIGCVIENSYNST
DCTAHTGAVWNPQYDVCTFVSATSPSTCSSNSYSWIDCSSHSPHECYPITCSVQRV---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHJ188 (VHJ188Q) /CSM/VH/VHJ1-D/VHJ188Q.Seq.d/                       1053   0.0
AHP292 (AHP292Q) /CSM/AH/AHP2-D/AHP292Q.Seq.d/                        624   e-178
AFO265 (AFO265Q) /CSM/AF/AFO2-C/AFO265Q.Seq.d/                         38   0.13
VSC779 (VSC779Q) /CSM/VS/VSC7-D/VSC779Q.Seq.d/                         34   2.1
VSC322 (VSC322Q) /CSM/VS/VSC3-A/VSC322Q.Seq.d/                         34   2.1
VHA577 (VHA577Q) /CSM/VH/VHA5-D/VHA577Q.Seq.d/                         34   2.1
VFN505 (VFN505Q) /CSM/VF/VFN5-A/VFN505Q.Seq.d/                         34   2.1
VFL877 (VFL877Q) /CSM/VF/VFL8-D/VFL877Q.Seq.d/                         34   2.1
VFJ534 (VFJ534Q) /CSM/VF/VFJ5-B/VFJ534Q.Seq.d/                         34   2.1
VFJ104 (VFJ104Q) /CSM/VF/VFJ1-A/VFJ104Q.Seq.d/                         34   2.1

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ423654) Dictyostelium discoideum cDNA clone:ddv49o21, 5' ...  1053   0.0    1
(BJ338515) Dictyostelium discoideum cDNA clone:dda61g24, 5' ...   624   e-175  1
(BX571969) Zebrafish DNA sequence from clone DKEY-93P1 in li...    46   0.28   3
(FK144618) XABT176692.b1 Gateway compatible cien cDNA librar...    48   0.33   1
(AC161214) Mus musculus chromosome 8, clone RP23-78A10, comp...    46   1.3    1
(AM463553) Vitis vinifera contig VV78X137344.4, whole genome...    46   1.3    1
(CU570874) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   1.3    1
(CR382324) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   1.3    1
(CR936257) Natronomonas pharaonis DSM 2160 complete genome.        46   1.3    1
(AP006640) Lotus japonicus genomic DNA, chromosome 3, clone:...    44   5.1    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P98118) RecName: Full=Vitamin K-dependent protein S; Flags: Pre...    42   0.013
S38819(S38819;S37238)plasma protein S - rabbit (fragment)              42   0.013
M14338_1(M14338|pid:none) Homo sapiens PROS1 (PROS1) precursor R...    41   0.017
(P07225) RecName: Full=Vitamin K-dependent protein S; Flags: Pre...    41   0.017
M15036_1(M15036|pid:none) Human vitamin K-dependent plasma prote...    41   0.017
(P53813) RecName: Full=Vitamin K-dependent protein S; Flags: Pre...    40   0.038
L31380_1(L31380|pid:none) Macaca mulatta vitamin K dependent pro...    40   0.038
(Q28520) RecName: Full=Vitamin K-dependent protein S; Flags: Pre...    40   0.038
AE014134_2546(AE014134|pid:none) Drosophila melanogaster chromos...    39   0.085
AB264317_1(AB264317|pid:none) Dorcus curvidens binodulosus dcbAF...    39   0.085

 psg: 0.75  gvh: 0.44  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: cytoskeletal
	 12.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for VHJ188 is cyt

>VHJ188F.Seq
TTTTTCAAGAGTTTGATTTCCCTGCAGATTTCAATTGTTCTCTTTATGGATTTTGTCAAA
TTGAATCATCCACTTGCTATGGAGTCTACGAAATCGGTAGTGCATGTTCTCAATTATGTG
ATGCTACCACATCCTATTGTGGGCATTGTTCAAGTGAAAATCAAACCTATTGTCATCAAA
TTACAACACTAACCGATGAAACAACTTGTAAATCAAATTCAGCATGTCTTTTACCAAATG
GTGAATATCAATTGGGTGTAACTAAAGAACAATGTGAAAGTTTAGGTCAATGTTCAGATG
GTTGTGGTTATGAATGTAGTGGTTATATTGGTTGTGTCATTGAAAATTCATACAATTCAA
CCGATTGTACAGCTCATACAGGTGCTGTATGGAATCCACAATATGATGTTTGTACATTTG
TTTCTGCAACATCACCATCGACTTGTTCTTCTAATTCTTATAGTTGGATTGATTGTTCAA
GTCATTCACCACATGAATGTTATCCAATCACTTGTTCAGTTCAAAGAGTTCNNNNNNNNN
N