>VHJ165 (VHJ165Q) /CSM/VH/VHJ1-C/VHJ165Q.Seq.d/
XXXXXXXXXXATGCATAGAATGCAGNACCCATAGTTTCATGAGTAACATTTGTAAAGATT
TCATGAGAGAATTGGGATGTAACATCTGCCAAATGTTTATGTACGCCACCACCCTCTGCA
TTGGTTTGAATTGCACCAATACTATTTAAANCCAATATAACTTGTTCTGCGGCTTTTTNA
CGAATTTTAGATTGGTGATTATTAACTGATAATTTCAAAATGTATGAATAACCTCNTAAA
TATTCTGGTGTTGACCAGTGATTTGATTCTGCCAATACCAATACATATCCCAATATATAA
GTACNTGAGTTAACTAATGATTGTTCATCATTNGACANCGTTGAATTNAATGNTGTCTCN
TGAGTNACATANTTCTCCAATATATTAATCATTGGTAAAATAATANTTNCTGNNTGNTNT
TTAATAANCGGAANTGAAACTTGTGGTAAAATTNAAGNAAATAATTTTAATAA

---CIECXTHSFMSNICKDFMRELGCNICQMFMYATTLCIGLNCTNTI*xqynlfcgfxt
nfrlviin**fqnv*its*ifwc*pvi*fcqyqyisqyist*vn**lfiixxr*ixxclx
sxixlqyinhw*nnxxxxxfnxrx*nlw*nxxk*f**

Frame A:
---CIECXTHSFMSNICKDFMRELGCNICQMFMYATTLCIGLNCTNTI*xqynlfcgfxt
nfrlviin**fqnv*its*ifwc*pvi*fcqyqyisqyist*vn**lfiixxr*ixxclx
sxixlqyinhw*nnxxxxxfnxrx*nlw*nxxk*f**


Frame B:
---a*naxpivs*vtfvkis*enwdvtsakclctpppsalv*iapilfkxnitcsaafxr
ildw*lltdnfkmye*pxkysgvdq*fdsantntypni*vxeltndcssxdxvexnxvs*
vtxfsniliigkiixxxxxlixgxetcgkixxnnfn


Frame C:
---hrmqxp*fhe*hl*rfherigm*hlpnvyvrhhplhwfelhqyylxpi*lvlrlfxe
f*igdy*liiskcmnnlxnilvltsdlilpipihipiykyxs*lmivhhxtxlnxmxsxe
xhxspiy*slvk*xxlxxx**xexklvvkxkxiili

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHJ165 (VHJ165Q) /CSM/VH/VHJ1-C/VHJ165Q.Seq.d/                        787   0.0
VHN185 (VHN185Q) /CSM/VH/VHN1-D/VHN185Q.Seq.d/                        710   0.0
VHF385 (VHF385Q) /CSM/VH/VHF3-D/VHF385Q.Seq.d/                        706   0.0
VSJ715 (VSJ715Q) /CSM/VS/VSJ7-A/VSJ715Q.Seq.d/                         32   7.2
VSF565 (VSF565Q) /CSM/VS/VSF5-C/VSF565Q.Seq.d/                         32   7.2
VHE873 (VHE873Q) /CSM/VH/VHE8-D/VHE873Q.Seq.d/                         32   7.2
VFO186 (VFO186Q) /CSM/VF/VFO1-D/VFO186Q.Seq.d/                         32   7.2
VFC870 (VFC870Q) /CSM/VF/VFC8-C/VFC870Q.Seq.d/                         32   7.2
SSL658 (SSL658Q) /CSM/SS/SSL6-C/SSL658Q.Seq.d/                         32   7.2
SSC739 (SSC739Q) /CSM/SS/SSC7-B/SSC739Q.Seq.d/                         32   7.2

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC110915|AC110915.5 Mus musculus clone RP24-405F22, WORKING DRAFT SEQUENCE, 54 ordered pieces.    34   0.64   8
BX664705|BX664705.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  DKEY-11E6.    32   0.84   6
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    34   1.1    8
AC125665|AC125665.3 Rattus norvegicus clone CH230-157A7, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    44   1.7    1
AC125303|AC125303.3 Rattus norvegicus clone CH230-43G7, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    44   1.7    1
AC142095|AC142095.2 Medicago truncatula clone mth2-14c17, WORKING DRAFT SEQUENCE, 2 ordered pieces.    34   3.3    4
AC115498|AC115498.4 Rattus norvegicus clone CH230-85C21, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    42   6.8    1
AC099318|AC099318.2 Felis catus clone RP86-552L21, WORKING DRAFT SEQUENCE, 10 ordered pieces.    42   6.8    1
AU170868|AU170868.1 Oryzias latipes cDNA, clone:br6852.            42   6.8    1
AW110443|AW110443.1 MT2284 mouse liver, dioxin treated Mus musculus cDNA clone MT2284 3' similar to M27008 Mouse alpha-1 acid glycoprotein (Agp-1B) mRNA, mRNA sequence.    42   6.8    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001146_348(CP001146|pid:none) Dictyoglomus thermophilum H-6-12...    33   4.2
CP000029_203(CP000029|pid:none) Staphylococcus epidermidis RP62A...    32   5.5
AM910992_83(AM910992|pid:none) Plasmodium knowlesi strain H chro...    32   9.4

 psg: 0.75  gvh: 0.54  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 24.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: Golgi

>> prediction for VHJ165 is cyt

>VHJ165Z.Seq
NNNNNNNNNNATGCATAGAATGCAGNACCCATAGTTTCATGAGTAACATTTGTAAAGATT
TCATGAGAGAATTGGGATGTAACATCTGCCAAATGTTTATGTACGCCACCACCCTCTGCA
TTGGTTTGAATTGCACCAATACTATTTAAANCCAATATAACTTGTTCTGCGGCTTTTTNA
CGAATTTTAGATTGGTGATTATTAACTGATAATTTCAAAATGTATGAATAACCTCNTAAA
TATTCTGGTGTTGACCAGTGATTTGATTCTGCCAATACCAATACATATCCCAATATATAA
GTACNTGAGTTAACTAATGATTGTTCATCATTNGACANCGTTGAATTNAATGNTGTCTCN
TGAGTNACATANTTCTCCAATATATTAATCATTGGTAAAATAATANTTNCTGNNTGNTNT
TTAATAANCGGAANTGAAACTTGTGGTAAAATTNAAGNAAATAATTTTAATAA