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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHI876
Library VH
(Link to library)
Clone ID VHI876
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16583-1
Original site URL
Representative seq. ID VHI876P
(Link to Original site)
Representative DNA sequence 
>VHI876 (VHI876Q) /CSM/VH/VHI8-D/VHI876Q.Seq.d/
GTAAGCAGAACTGGCGATGTGGGTTGAACCAAATATTGGGATAAGACGTCTAACATTCAC
TAATAGATACCACAAAAGGTGTTAGTTCATTAAGACAGCAGGACGGTGGCCATGGAAGTC
GGTATCCGCTAAGGAGTGTGTAACAACTCACCTGCCAAATGGACTAGCCCTGAAAATGGA
TGACGCTAGCAGTGGATGGTCGATGCCCAATCGTTAAAAGAAGTGATAATACTTTTAACG
TGTAGGAAGGCGTGAAGGTAACGTAGAAGCTTGAATGTGAATTCGAGTGGAGTTGTCTTT
AGTGCAGATCTTGATGGTAGTAGCAAATATTCAAAAGAATTTACTTTGAAGGCCGAAGTG
GGGAAGGGTTCCATAACAATGGAATTCACTTATGGGTGAGTCGATCCTAAGGTTTGGGTT
AACTCTCTCTAATAAGGTTACTAGGTCATTGGATCGAAAGTGAAGGTGGCTTTAACACTA
GTGACTTTATAGGCCGAAAGGGAAGCGGGTTAAAATTCCTGCACCATCGAATGGGATATT
AGGGTAACCGATCGTAATCCGGGACATCAATTGGCGGTCGAGGAAGAGTTATCTTTTCTT
GTTAACATTGTCTTGGGGTCCTCCGAATCAXXXXXXXXXXTGCTTTTTGATCCTTCGATG
TCGGCTTTTTTTATCATTGTGAAGCAGAATTCACAAAGTGTTGGATTGTTCACCCACTAA
CAAGGAACGTGANCTGGGTTTAGACCGTNGTGANACANGTTAGTTTTACCCTACTGTTGT
CAATTGTTTGGGTAANAGTAGCATGATTTAGTACGANAGGAACTGTCATGCCGGATCNNT
GGTNTGTAGGTTTATTTGACAAAANANTGACCTGCCGNTACCATCCGTTGGATAANGGNT
GAACGCCTTTAAGTCANAATCCNTTTTANAAACGCAAACCAAATGCTTTANAGTGTGAAT
GTTGTAGGTAACATTAGGTTGTTGGTGGGGGACCACTTTCAACTTTAAACCATATGATTA
ATCGNTGNTACACTGCAGTTTCCTTCCGGTTATTGTGGTGGGTGGNTAAATTTTAATTTA
NATCCTCGTTCCGNTCAACTNTTNGATTGTAGACGACTATCAAATGAACTAGGTGCTGTA
AGCTTCCGAGTAGCGTTCAGTTACGAGGGGTTGAGGCTTTTCCNTTAGTTCTTTCTTGNA
AAAAAAAAATAAAATAAAAAAAAAATTTAATAATAAAAAAATAAAT
sequence update 2002.10.25
Translated Amino Acid sequence 
vsrtgdvg*tkywdktsnih**ipqkvlvh*dsrtvamevgir*gvcnnspakwtspeng
*r*qwmvdaqslkeviilltcrka*r*rrslnvnssgvvfsadldgsskyskeftlkaev
gkgsitmeftyg*vdpkvwvnsl**gy*vigskvkvaltlvtl*aereag*NSCTIEWDI
RVTDRNPGHQLAVEEELSFLVNIVLGSSES---

---LFDPSMSAFFIIVKQNSQSVGLFTH*qgt*xgfrpx*xxlvlpyccqlfg*x*hdlv
rxelscrixgx*vyltkx*paxtirwixxerl*vxixfxnanqmlxsvnvvgnirllvgd
hfql*ti*lixxtlqfpsgycggwxnfnlxprsxqlxdcrrlsnelgavsfrvafsyegl
rlfx*fflxkkk*nkkki***knk
Translated Amino Acid sequence (All Frames) 
Frame A:
vsrtgdvg*tkywdktsnih**ipqkvlvh*dsrtvamevgir*gvcnnspakwtspeng
*r*qwmvdaqslkeviilltcrka*r*rrslnvnssgvvfsadldgsskyskeftlkaev
gkgsitmeftyg*vdpkvwvnsl**gy*vigskvkvaltlvtl*aereag*NSCTIEWDI
RVTDRNPGHQLAVEEELSFLVNIVLGSSES---

---cflilrcrlflsl*srihkvldcsptnkerxlgldrxxtx*fyptvvnclgxssmi*
yxrnchagsxvcrfi*qxxdlpxpsvg*xxnafksxsxlxtqtkcfxv*ml*vtlgcwwg
ttfnfkpyd*sxxhcsflpvivvgg*ilixilvpxnxxivddyqmn*vl*ase*rsvtrg
*gfsxssflxkknkikkkfnnkkin

Frame B:
*aelamwvepnigirrltftnryhkrc*fiktagrwpwksvsakecvtthlpnglalkmd
dassgwsmpnr*kk**yf*rvgrregnvea*m*irvelslvqilmvvaniqknll*rpkw
grvp*qwnslmgesilrfgltlsnkvtrsldrk*rwl*h**lyrpkgkrvkipapsngil
g*pivirdinwrsrksylflltlswgppn---

---af*sfdvgffyhceaeftkcwivhpltrnvxwv*tvvxxvsftlllsivwvxva*fs
txgtvmpdxwxvglfdkxxtcryhpldxg*tplsxnpfxkrkpnalxceccr*h*vvggg
plstlnhminrxytavsfrllwwvxkf*fxssfrstxxl*ttik*trccklpssvqlrgv
eafplvlsxkkkik*kknliikk*

Frame C:
kqnwrcglnqilg*dv*hslidttkgvsslrqqdgghgsryplrsv*qltcqmd*p*kwm
tlavdgrcpivkrsdntfnv*egvkvt*klecefewscl*crs*w**qifkriyfegrsg
egfhnngihlwvsrs*glg*lslirllghwieseggfntsdfigrkgsglkflhhrmgy*
gnrs*sgtsiggrgrvifsc*hclgvlri---

---LFDPSMSAFFIIVKQNSQSVGLFTH*qgt*xgfrpx*xxlvlpyccqlfg*x*hdlv
rxelscrixgx*vyltkx*paxtirwixxerl*vxixfxnanqmlxsvnvvgnirllvgd
hfql*ti*lixxtlqfpsgycggwxnfnlxprsxqlxdcrrlsnelgavsfrvafsyegl
rlfx*fflxkkk*nkkki***knk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHI876 (VHI876Q) /CSM/VH/VHI8-D/VHI876Q.Seq.d/                       2119   0.0
CHP689 (CHP689Q) /CSM/CH/CHP6-D/CHP689Q.Seq.d/                       1243   0.0
CHO461 (CHO461Q) /CSM/CH/CHO4-C/CHO461Q.Seq.d/                       1235   0.0
VHI308 (VHI308Q) /CSM/VH/VHI3-A/VHI308Q.Seq.d/                       1227   0.0
VHQ367 (VHQ367Q) /CSM/VH/VHQ3-C/VHQ367Q.Seq.d/                       1209   0.0
VHG394 (VHG394Q) /CSM/VH/VHG3-D/VHG394Q.Seq.d/                       1197   0.0
VHP355 (VHP355Q) /CSM/VH/VHP3-C/VHP355Q.Seq.d/                       1195   0.0
VHL615 (VHL615Q) /CSM/VH/VHL6-A/VHL615Q.Seq.d/                       1195   0.0
VHI207 (VHI207Q) /CSM/VH/VHI2-A/VHI207Q.Seq.d/                       1195   0.0
SHE483 (SHE483Q) /CSM/SH/SHE4-D/SHE483Q.Seq.d/                       1195   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AY171066) Dictyostelium discoideum extrachromosomal palindr...  1249   0.0    1
(BJ423329) Dictyostelium discoideum cDNA clone:ddv48h20, 5' ...  1249   0.0    1
(BJ370328) Dictyostelium discoideum cDNA clone:ddc53a24, 5' ...  1243   0.0    1
(BJ369453) Dictyostelium discoideum cDNA clone:ddc50j16, 5' ...  1235   0.0    1
(X00601) Dictyostelium discoideum ribosomal RNA gene.            1231   0.0    1
(BJ422840) Dictyostelium discoideum cDNA clone:ddv47p01, 5' ...  1227   0.0    1
(DQ340385) Dictyostelium citrinum 17S ribosomal RNA, 5.8S ri...  1217   0.0    1
(BJ427775) Dictyostelium discoideum cDNA clone:ddv63f17, 5' ...  1209   0.0    1
(BJ421809) Dictyostelium discoideum cDNA clone:ddv43l23, 5' ...  1197   0.0    1
(BJ427212) Dictyostelium discoideum cDNA clone:ddv61n13, 5' ...  1195   0.0    1
dna update 2008.11.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU430725_1(EU430725|pid:none) Cupressus sempervirens clone CYPLP...    74   8e-12
CP000497_644(CP000497|pid:none) Pichia stipitis CBS 6054 chromos...    60   4e-08
U12823_1(U12823|pid:none) Acanthamoeba polyphaga CDC:0187:1 hemo...    45   3e-05
EU955547_1(EU955547|pid:none) Zea mays clone 1536647 hypothetica...    45   0.007
AL844509_690(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    35   7.3
protein update 2009. 7.14
PSORT 

 psg: 0.75  gvh: 0.52  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 20.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for VHI876 is cyt
5' end seq. ID VHI876F
5' end seq. 
>VHI876F.Seq
GTAAGCAGAACTGGCGATGTGGGTTGAACCAAATATTGGGATAAGACGTCTAACATTCAC
TAATAGATACCACAAAAGGTGTTAGTTCATTAAGACAGCAGGACGGTGGCCATGGAAGTC
GGTATCCGCTAAGGAGTGTGTAACAACTCACCTGCCAAATGGACTAGCCCTGAAAATGGA
TGACGCTAGCAGTGGATGGTCGATGCCCAATCGTTAAAAGAAGTGATAATACTTTTAACG
TGTAGGAAGGCGTGAAGGTAACGTAGAAGCTTGAATGTGAATTCGAGTGGAGTTGTCTTT
AGTGCAGATCTTGATGGTAGTAGCAAATATTCAAAAGAATTTACTTTGAAGGCCGAAGTG
GGGAAGGGTTCCATAACAATGGAATTCACTTATGGGTGAGTCGATCCTAAGGTTTGGGTT
AACTCTCTCTAATAAGGTTACTAGGTCATTGGATCGAAAGTGAAGGTGGCTTTAACACTA
GTGACTTTATAGGCCGAAAGGGAAGCGGGTTAAAATTCCTGCACCATCGAATGGGATATT
AGGGTAACCGATCGTAATCCGGGACATCAATTGGCGGTCGAGGAAGAGTTATCTTTTCTT
GTTAACATTGTCTTGGGGTCCTCCGAATCANNNNNNNNNN
Length of 5' end seq. 640
3' end seq. ID VHI876Z
3' end seq. 
>VHI876Z.Seq
NNNNNNNNNNTGCTTTTTGATCCTTCGATGTCGGCTTTTTTTATCATTGTGAAGCAGAAT
TCACAAAGTGTTGGATTGTTCACCCACTAACAAGGAACGTGANCTGGGTTTAGACCGTNG
TGANACANGTTAGTTTTACCCTACTGTTGTCAATTGTTTGGGTAANAGTAGCATGATTTA
GTACGANAGGAACTGTCATGCCGGATCNNTGGTNTGTAGGTTTATTTGACAAAANANTGA
CCTGCCGNTACCATCCGTTGGATAANGGNTGAACGCCTTTAAGTCANAATCCNTTTTANA
AACGCAAACCAAATGCTTTANAGTGTGAATGTTGTAGGTAACATTAGGTTGTTGGTGGGG
GACCACTTTCAACTTTAAACCATATGATTAATCGNTGNTACACTGCAGTTTCCTTCCGGT
TATTGTGGTGGGTGGNTAAATTTTAATTTANATCCTCGTTCCGNTCAACTNTTNGATTGT
AGACGACTATCAAATGAACTAGGTGCTGTAAGCTTCCGAGTAGCGTTCAGTTACGAGGGG
TTGAGGCTTTTCCNTTAGTTCTTTCTTGNAAAAAAAAAATAAAATAAAAAAAAAATTTAA
TAATAAAAAAATAAAT
Length of 3' end seq. 616
Connected seq. ID VHI876P
Connected seq. 
>VHI876P.Seq
GTAAGCAGAACTGGCGATGTGGGTTGAACCAAATATTGGGATAAGACGTCTAACATTCAC
TAATAGATACCACAAAAGGTGTTAGTTCATTAAGACAGCAGGACGGTGGCCATGGAAGTC
GGTATCCGCTAAGGAGTGTGTAACAACTCACCTGCCAAATGGACTAGCCCTGAAAATGGA
TGACGCTAGCAGTGGATGGTCGATGCCCAATCGTTAAAAGAAGTGATAATACTTTTAACG
TGTAGGAAGGCGTGAAGGTAACGTAGAAGCTTGAATGTGAATTCGAGTGGAGTTGTCTTT
AGTGCAGATCTTGATGGTAGTAGCAAATATTCAAAAGAATTTACTTTGAAGGCCGAAGTG
GGGAAGGGTTCCATAACAATGGAATTCACTTATGGGTGAGTCGATCCTAAGGTTTGGGTT
AACTCTCTCTAATAAGGTTACTAGGTCATTGGATCGAAAGTGAAGGTGGCTTTAACACTA
GTGACTTTATAGGCCGAAAGGGAAGCGGGTTAAAATTCCTGCACCATCGAATGGGATATT
AGGGTAACCGATCGTAATCCGGGACATCAATTGGCGGTCGAGGAAGAGTTATCTTTTCTT
GTTAACATTGTCTTGGGGTCCTCCGAATCA----------TGCTTTTTGATCCTTCGATG
TCGGCTTTTTTTATCATTGTGAAGCAGAATTCACAAAGTGTTGGATTGTTCACCCACTAA
CAAGGAACGTGANCTGGGTTTAGACCGTNGTGANACANGTTAGTTTTACCCTACTGTTGT
CAATTGTTTGGGTAANAGTAGCATGATTTAGTACGANAGGAACTGTCATGCCGGATCNNT
GGTNTGTAGGTTTATTTGACAAAANANTGACCTGCCGNTACCATCCGTTGGATAANGGNT
GAACGCCTTTAAGTCANAATCCNTTTTANAAACGCAAACCAAATGCTTTANAGTGTGAAT
GTTGTAGGTAACATTAGGTTGTTGGTGGGGGACCACTTTCAACTTTAAACCATATGATTA
ATCGNTGNTACACTGCAGTTTCCTTCCGGTTATTGTGGTGGGTGGNTAAATTTTAATTTA
NATCCTCGTTCCGNTCAACTNTTNGATTGTAGACGACTATCAAATGAACTAGGTGCTGTA
AGCTTCCGAGTAGCGTTCAGTTACGAGGGGTTGAGGCTTTTCCNTTAGTTCTTTCTTGNA
AAAAAAAAATAAAATAAAAAAAAAATTTAATAATAAAAAAATAAAT
Length of connected seq. 1236
Full length Seq ID -
Full length Seq. -
Length of full length seq. -