>VHI867 (VHI867Q) /CSM/VH/VHI8-C/VHI867Q.Seq.d/
XXXXXXXXXXAATTCCCAACCATTGCAACCGTTATCATTGCCATTTTGAATGATGGTACC
ATGTTAACAATCTCTAAAGATCGTGTAAGAGCTAGAAATGAACCAGATCAATGGAATCTT
TTCGAAGTATTCACTATGGCACTTTGTTATGGTTTCTATTTAGTAGGTTCAACCATTGTA
TTCTTTGCAATCATTCATGATGGTACTTGGTTCCATGATGCTATCAATCTTCGTATCTTA
ACCGATAATGAACTTCGTGGTCTCATCTATCTTCAAGTCTCTATCTCTGGTCTTGCAACT
ATTTTCGTATCACGTAGTCAAGGTTTCTCTTACTTTGAACGTCCAGGTAATCTTGTAATC
TTTGCTTTCGTTATGTCTCAAATTGTTGCTACCTTTATTGGTGTCTATGGTTTCCGTGGT
TATCCACATGATTCCTTTTCCGATAATCCAGATTATCCAGTACATGGTACAAATTTCCAA
GGTTGTGGTTGGGGTTGGGCTGTTTGTGCTTGGATTTGGTGTTTCCTTTGGTACATTCCA
ATGGATTTCATTAAATTAGGTGTCACCTATATTCTCCGTGGTAAGATTGAACCAATCAAT
AAAGATGCACTCCGTAAAATCTATGGTTGGTTTGGT

---FPTIATVIIAILNDGTMLTISKDRVRARNEPDQWNLFEVFTMALCYGFYLVGSTIVF
FAIIHDGTWFHDAINLRILTDNELRGLIYLQVSISGLATIFVSRSQGFSYFERPGNLVIF
AFVMSQIVATFIGVYGFRGYPHDSFSDNPDYPVHGTNFQGCGWGWAVCAWIWCFLWYIPM
DFIKLGVTYILRGKIEPINKDALRKIYGWFG

Frame A:
---ipnhcnryhchfe*wyhvnnl*rscks*k*trsmesfrsihygtllwflfsrfnhci
lcnhs*wylvp*cyqssylnr**tswshlssslylwscnyfrit*srflll*tsr*scnl
cfryvsnccylywclwfpwlst*flfr*srlsstwykfprlwlglgclcldlvfplvhsn
gfh*irchlyspw*d*tnq*rctp*nlwlvw


Frame B:
---FPTIATVIIAILNDGTMLTISKDRVRARNEPDQWNLFEVFTMALCYGFYLVGSTIVF
FAIIHDGTWFHDAINLRILTDNELRGLIYLQVSISGLATIFVSRSQGFSYFERPGNLVIF
AFVMSQIVATFIGVYGFRGYPHDSFSDNPDYPVHGTNFQGCGWGWAVCAWIWCFLWYIPM
DFIKLGVTYILRGKIEPINKDALRKIYGWFG


Frame C:
---sqplqplslpf*mmvpc*qslkiv*elemnqingifskyslwhfvmvsi**vqplys
lqsfmmvlgsmmlsifvs*pimnfvvssifkslslvlqlfsyhvvkvsltlnvqvil*sl
lslclklllpllvsmvsvvihmipfpiiqiiqymvqiskvvvgvglfvlgfgvsfgtfqw
isln*vspifsvvrlnqsikmhsvksmvgl

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHI867 (VHI867Q) /CSM/VH/VHI8-C/VHI867Q.Seq.d/                       1241   0.0
VHI618 (VHI618Q) /CSM/VH/VHI6-A/VHI618Q.Seq.d/                       1241   0.0
VFN107 (VFN107Q) /CSM/VF/VFN1-A/VFN107Q.Seq.d/                       1241   0.0
CHL228 (CHL228Q) /CSM/CH/CHL2-B/CHL228Q.Seq.d/                       1241   0.0
VHN446 (VHN446Q) /CSM/VH/VHN4-B/VHN446Q.Seq.d/                       1233   0.0
CHR538 (CHR538Q) /CSM/CH/CHR5-B/CHR538Q.Seq.d/                       1231   0.0
VHJ167 (VHJ167Q) /CSM/VH/VHJ1-C/VHJ167Q.Seq.d/                       1229   0.0
VHK622 (VHK622Q) /CSM/VH/VHK6-A/VHK622Q.Seq.d/                       1227   0.0
VHB587 (VHB587Q) /CSM/VH/VHB5-D/VHB587Q.Seq.d/                       1227   0.0
VHA653 (VHA653Q) /CSM/VH/VHA6-C/VHA653Q.Seq.d/                       1227   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X98286|X98286.1 D.discoideum mRNA for P-type ATPase.             1233   0.0    1
CB980117|CB980117.1 CAB70001_IaR_H03 Cabernet Sauvignon Berry Post-Veraison - CAB7 Vitis vinifera cDNA clone CAB70001_IaR_H03 3', mRNA sequence.    44   0.005  2
CB979848|CB979848.1 CAB70001_IIcF_H03 Cabernet Sauvignon Berry Post-Veraison - CAB7 Vitis vinifera cDNA clone CAB70001_IIcF_H03 5', mRNA sequence.    44   0.006  2
CB980047|CB980047.1 CAB70001_IaF_H03 Cabernet Sauvignon Berry Post-Veraison - CAB7 Vitis vinifera cDNA clone CAB70001_IaF_H03 5', mRNA sequence.    44   0.006  2
AL387523|AL387523.1 Medicago truncatula EST MtBC43B08F1 : T3 end of clone MtBC43B08 of  cDNA library MtBC from arbuscular mycorrhiza of cultivar Jemalong of Medicago truncatula (barrel medic).    46   0.014  2
AJ132892|AJ132892.1 Medicago truncatula mRNA for H+-ATPase.        46   0.085  2
BQ585191|BQ585191.1 S014222-024-001-M19-SP6 MPIZ-ADIS-024-inflorescence Beta vulgaris cDNA clone 024-001-M19 5-PRIME, mRNA sequence.    38   0.25   2
AF156679|AF156679.1 Nicotiana plumbaginifolia plasma membrane proton ATPase (pma6) gene, exons 6-15 and complete cds.    38   0.33   2
AL445304|AL445304.5 Human DNA sequence *** SEQUENCING CANCELLED *** from clone  RP11-542H18.    38   0.54   4
AJ310523|AJ310523.1 Vicia faba L. mRNA for P-type H+-ATPase (vha4 gene).    32   0.55   4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

T30580(T30580) P-type ATPase - slime mold (Dictyostelium discoid...   441   e-123
(P54679) RecName: Full=Probable plasma membrane ATPase;         ...   441   e-123
D88424_1(D88424|pid:none) Cyanidium caldarium mRNA for plasma me...   159   6e-38
(Q03194) RecName: Full=Plasma membrane ATPase 4;          EC=3.6...   158   1e-37
AB022442_1(AB022442|pid:none) Vicia faba VHA2 mRNA for p-type H+...   157   2e-37
AB177650_1(AB177650|pid:none) Daucus carota DcPA 4 mRNA for plas...   157   2e-37
DQ103594_5(DQ103594|pid:none) Capsella rubella clone BAC 8F1, co...   156   4e-37
AM487422_1(AM487422|pid:none) Vitis vinifera contig VV78X258876....   156   4e-37
DQ103595_5(DQ103595|pid:none) Arabidopsis arenosa clone BAC 28N1...   156   5e-37
AC155282_39(AC155282|pid:none) Medicago truncatula chromosome 2 ...   156   5e-37

 psg: 0.96  gvh: 0.51  alm: 0.25  top: 0.60  tms: 0.33  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 40.0 %: plasma membrane
	 20.0 %: endoplasmic reticulum
	 12.0 %: vacuolar
	 12.0 %: mitochondrial
	  8.0 %: nuclear
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for VHI867 is pla

>VHI867Z.Seq
NNNNNNNNNNAATTCCCAACCATTGCAACCGTTATCATTGCCATTTTGAATGATGGTACC
ATGTTAACAATCTCTAAAGATCGTGTAAGAGCTAGAAATGAACCAGATCAATGGAATCTT
TTCGAAGTATTCACTATGGCACTTTGTTATGGTTTCTATTTAGTAGGTTCAACCATTGTA
TTCTTTGCAATCATTCATGATGGTACTTGGTTCCATGATGCTATCAATCTTCGTATCTTA
ACCGATAATGAACTTCGTGGTCTCATCTATCTTCAAGTCTCTATCTCTGGTCTTGCAACT
ATTTTCGTATCACGTAGTCAAGGTTTCTCTTACTTTGAACGTCCAGGTAATCTTGTAATC
TTTGCTTTCGTTATGTCTCAAATTGTTGCTACCTTTATTGGTGTCTATGGTTTCCGTGGT
TATCCACATGATTCCTTTTCCGATAATCCAGATTATCCAGTACATGGTACAAATTTCCAA
GGTTGTGGTTGGGGTTGGGCTGTTTGTGCTTGGATTTGGTGTTTCCTTTGGTACATTCCA
ATGGATTTCATTAAATTAGGTGTCACCTATATTCTCCGTGGTAAGATTGAACCAATCAAT
AAAGATGCACTCCGTAAAATCTATGGTTGGTTTGGT