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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHI834
Library VH
(Link to library)
Clone ID VHI834
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16583-1
Original site URL
Representative seq. ID VHI834P
(Link to Original site)
Representative DNA sequence 
>VHI834 (VHI834Q) /CSM/VH/VHI8-B/VHI834Q.Seq.d/
AAAATAGGAGCTCTTAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGTGGGTTGAACC
AAATATTGGGATAAGACGTCTAACATTCACTAATAGATACCACAAAAGGTGTTAGTTCAT
TAAGACAGCAGGACGGTGGCCATGGAAGTCGGTATCCGCTAAGGAGTGTGTAACAACTCA
CCTGCCAAATGGACTAGCCCTGAAAATGGATGACGCTAGCAGTGGATGGTCGATGCCCAA
TCGTTAAAAGAAGTGATAATACTTTTAACGTGTAGGAAGGCGTGAAGGTAACGTAGAAGC
TTGAATGTGAATTCGAGTGGAGTTGTCTTTAGTGCAGATCTTGATGGTAGTAGCAAATAT
TCAAAAGAATTTACTTTGAAGGCCGAAGTGGGGAAGGGTTCCATAACAATGGAATTCACT
TATGGGTGAGTCGATCCTAAGGTTTGGGTTAACTCTCTCTAATAAGGTTACTAGGTCATT
GGATCGAAAGTGAAGGTGGCTTTAACACTAGTGACTTTATAGGCCGAAAGGGAAGCGGGT
TAAAATTCCTGCACCATCGAATGGGATATTAGGGTAACCGATCGTAATCCGGGACATCAA
TTGGCGGTCXXXXXXXXXXGGGTTTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTG
TTGTCAATTGTTTGCGTAATAGTAGCATGATTTAGTACGAGAGGAACTGTCATGCCGGAT
CACTGGTCTGTAGGTTTATTTGACAAAATAGTGACCTGCCGCTACCATCCGTTGGATAAT
GGCTGAACGCCTCTAAGTCAGAATCCATTCTAGAAACGCAAACCAAATGCTTTAGAGTGT
GAATGTTGTAGGTAACATTAGGTTGTTGGTGGGGGACCACTTTCAACTTTAAACCATATG
ATTAATCGCTGTTACACTGCAGTTTCCTTCCGGTTATTGTGGTGGGTGGCTAAATTCTAA
TTTATATCCTCGTTCCGCTCAACTCTTCGATTGTAGACG
sequence update 2002.10.25
Translated Amino Acid sequence 
kigalsgpflvsrtgdvg*tkywdktsnih**ipqkvlvh*dsrtvamevgir*gvcnns
pakwtspeng*r*qwmvdaqslkeviilltcrka*r*rrslnvnssgvvfsadldgssky
skeftlkaevgkgsitmeftyg*vdpkvwvnsl**gy*vigskvkvaltlvtl*aereag
*NSCTIEWDIRVTDRNPGHQLAV---

---GLDRRETG*fyptvvnclrnssmi*yernchagslvcrfi*qnsdlplpsvg*wlna
sksesiletqtkcfrv*ml*vtlgcwwgttfnfkpyd*sllhcsflpvivvgg*iliyil
vplnssivd
Translated Amino Acid sequence (All Frames) 
Frame A:
kigalsgpflvsrtgdvg*tkywdktsnih**ipqkvlvh*dsrtvamevgir*gvcnns
pakwtspeng*r*qwmvdaqslkeviilltcrka*r*rrslnvnssgvvfsadldgssky
skeftlkaevgkgsitmeftyg*vdpkvwvnsl**gy*vigskvkvaltlvtl*aereag
*NSCTIEWDIRVTDRNPGHQLAV---

---gfrps*drlvlpyccqlfa***hdlvreelscritgl*vyltk**paatirwimaer
l*vrihsrnanqml*svnvvgnirllvgdhfql*ti*liavtlqfpsgycggwlnsnlyp
rsaqlfdcr

Frame B:
k*ellvghfw*aelamwvepnigirrltftnryhkrc*fiktagrwpwksvsakecvtth
lpnglalkmddassgwsmpnr*kk**yf*rvgrregnvea*m*irvelslvqilmvvani
qknll*rpkwgrvp*qwnslmgesilrfgltlsnkvtrsldrk*rwl*h**lyrpkgkrv
kipapsngilg*pivirdinwr---

---GLDRRETG*fyptvvnclrnssmi*yernchagslvcrfi*qnsdlplpsvg*wlna
sksesiletqtkcfrv*ml*vtlgcwwgttfnfkpyd*sllhcsflpvivvgg*iliyil
vplnssivd

Frame C:
nrss*waifgkqnwrcglnqilg*dv*hslidttkgvsslrqqdgghgsryplrsv*qlt
cqmd*p*kwmtlavdgrcpivkrsdntfnv*egvkvt*klecefewscl*crs*w**qif
kriyfegrsgegfhnngihlwvsrs*glg*lslirllghwieseggfntsdfigrkgsgl
kflhhrmgy*gnrs*sgtsigg---

---v*tvvrqvsftlllsivcviva*fstrgtvmpdhwsvglfdkivtcryhpldng*tp
lsqnpf*krkpnalececcr*h*vvgggplstlnhminrcytavsfrllwwvakf*fiss
frstlrl*t
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHI834 (VHI834Q) /CSM/VH/VHI8-B/VHI834Q.Seq.d/                       1921   0.0
VHP355 (VHP355Q) /CSM/VH/VHP3-C/VHP355Q.Seq.d/                       1207   0.0
VHN816 (VHN816Q) /CSM/VH/VHN8-A/VHN816Q.Seq.d/                       1207   0.0
VHL615 (VHL615Q) /CSM/VH/VHL6-A/VHL615Q.Seq.d/                       1207   0.0
VHI207 (VHI207Q) /CSM/VH/VHI2-A/VHI207Q.Seq.d/                       1207   0.0
VHG394 (VHG394Q) /CSM/VH/VHG3-D/VHG394Q.Seq.d/                       1207   0.0
VHA896 (VHA896Q) /CSM/VH/VHA8-D/VHA896Q.Seq.d/                       1207   0.0
SHG315 (SHG315Q) /CSM/SH/SHG3-A/SHG315Q.Seq.d/                       1207   0.0
SHE483 (SHE483Q) /CSM/SH/SHE4-D/SHE483Q.Seq.d/                       1207   0.0
CHQ795 (CHQ795Q) /CSM/CH/CHQ7-D/CHQ795Q.Seq.d/                       1207   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AY171066) Dictyostelium discoideum extrachromosomal palindr...  1207   0.0    1
(BJ427212) Dictyostelium discoideum cDNA clone:ddv61n13, 5' ...  1207   0.0    1
(BJ426199) Dictyostelium discoideum cDNA clone:ddv58p04, 5' ...  1207   0.0    1
(BJ424961) Dictyostelium discoideum cDNA clone:ddv54m04, 5' ...  1207   0.0    1
(BJ423167) Dictyostelium discoideum cDNA clone:ddv48d10, 5' ...  1207   0.0    1
(BJ422828) Dictyostelium discoideum cDNA clone:ddv47m02, 5' ...  1207   0.0    1
(BJ421809) Dictyostelium discoideum cDNA clone:ddv43l23, 5' ...  1207   0.0    1
(BJ418503) Dictyostelium discoideum cDNA clone:ddv32p24, 5' ...  1207   0.0    1
(BJ394701) Dictyostelium discoideum cDNA clone:dds36n03, 5' ...  1207   0.0    1
(BJ393837) Dictyostelium discoideum cDNA clone:dds32f22, 5' ...  1207   0.0    1
dna update 2008.11.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000497_644(CP000497|pid:none) Pichia stipitis CBS 6054 chromos...    60   7e-14
U12823_1(U12823|pid:none) Acanthamoeba polyphaga CDC:0187:1 hemo...    45   2e-05
EU955547_1(EU955547|pid:none) Zea mays clone 1536647 hypothetica...    45   0.005
EF192055_1(EF192055|pid:none) Trichosanthes dioica clone TDM01 p...    35   3.1
EU430725_1(EU430725|pid:none) Cupressus sempervirens clone CYPLP...    34   6.9
protein update 2009. 3.11
PSORT 

 psg: 0.75  gvh: 0.20  alm: 0.67  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 24.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	 12.0 %: mitochondrial

>> prediction for VHI834 is nuc
5' end seq. ID VHI834F
5' end seq. 
>VHI834F.Seq
AAAATAGGAGCTCTTAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGTGGGTTGAACC
AAATATTGGGATAAGACGTCTAACATTCACTAATAGATACCACAAAAGGTGTTAGTTCAT
TAAGACAGCAGGACGGTGGCCATGGAAGTCGGTATCCGCTAAGGAGTGTGTAACAACTCA
CCTGCCAAATGGACTAGCCCTGAAAATGGATGACGCTAGCAGTGGATGGTCGATGCCCAA
TCGTTAAAAGAAGTGATAATACTTTTAACGTGTAGGAAGGCGTGAAGGTAACGTAGAAGC
TTGAATGTGAATTCGAGTGGAGTTGTCTTTAGTGCAGATCTTGATGGTAGTAGCAAATAT
TCAAAAGAATTTACTTTGAAGGCCGAAGTGGGGAAGGGTTCCATAACAATGGAATTCACT
TATGGGTGAGTCGATCCTAAGGTTTGGGTTAACTCTCTCTAATAAGGTTACTAGGTCATT
GGATCGAAAGTGAAGGTGGCTTTAACACTAGTGACTTTATAGGCCGAAAGGGAAGCGGGT
TAAAATTCCTGCACCATCGAATGGGATATTAGGGTAACCGATCGTAATCCGGGACATCAA
TTGGCGGTCNNNNNNNNNN
Length of 5' end seq. 619
3' end seq. ID VHI834Z
3' end seq. 
>VHI834Z.Seq
NNNNNNNNNNGGGTTTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTGTTGTCAATT
GTTTGCGTAATAGTAGCATGATTTAGTACGAGAGGAACTGTCATGCCGGATCACTGGTCT
GTAGGTTTATTTGACAAAATAGTGACCTGCCGCTACCATCCGTTGGATAATGGCTGAACG
CCTCTAAGTCAGAATCCATTCTAGAAACGCAAACCAAATGCTTTAGAGTGTGAATGTTGT
AGGTAACATTAGGTTGTTGGTGGGGGACCACTTTCAACTTTAAACCATATGATTAATCGC
TGTTACACTGCAGTTTCCTTCCGGTTATTGTGGTGGGTGGCTAAATTCTAATTTATATCC
TCGTTCCGCTCAACTCTTCGATTGTAGACG
Length of 3' end seq. 390
Connected seq. ID VHI834P
Connected seq. 
>VHI834P.Seq
AAAATAGGAGCTCTTAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGTGGGTTGAACC
AAATATTGGGATAAGACGTCTAACATTCACTAATAGATACCACAAAAGGTGTTAGTTCAT
TAAGACAGCAGGACGGTGGCCATGGAAGTCGGTATCCGCTAAGGAGTGTGTAACAACTCA
CCTGCCAAATGGACTAGCCCTGAAAATGGATGACGCTAGCAGTGGATGGTCGATGCCCAA
TCGTTAAAAGAAGTGATAATACTTTTAACGTGTAGGAAGGCGTGAAGGTAACGTAGAAGC
TTGAATGTGAATTCGAGTGGAGTTGTCTTTAGTGCAGATCTTGATGGTAGTAGCAAATAT
TCAAAAGAATTTACTTTGAAGGCCGAAGTGGGGAAGGGTTCCATAACAATGGAATTCACT
TATGGGTGAGTCGATCCTAAGGTTTGGGTTAACTCTCTCTAATAAGGTTACTAGGTCATT
GGATCGAAAGTGAAGGTGGCTTTAACACTAGTGACTTTATAGGCCGAAAGGGAAGCGGGT
TAAAATTCCTGCACCATCGAATGGGATATTAGGGTAACCGATCGTAATCCGGGACATCAA
TTGGCGGTC----------GGGTTTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTG
TTGTCAATTGTTTGCGTAATAGTAGCATGATTTAGTACGAGAGGAACTGTCATGCCGGAT
CACTGGTCTGTAGGTTTATTTGACAAAATAGTGACCTGCCGCTACCATCCGTTGGATAAT
GGCTGAACGCCTCTAAGTCAGAATCCATTCTAGAAACGCAAACCAAATGCTTTAGAGTGT
GAATGTTGTAGGTAACATTAGGTTGTTGGTGGGGGACCACTTTCAACTTTAAACCATATG
ATTAATCGCTGTTACACTGCAGTTTCCTTCCGGTTATTGTGGTGGGTGGCTAAATTCTAA
TTTATATCCTCGTTCCGCTCAACTCTTCGATTGTAGACG
Length of connected seq. 989
Full length Seq ID -
Full length Seq. -
Length of full length seq. -