NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHI831
Library VH
(Link to library)
Clone ID VHI831
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U12356-1
Original site URL
Representative seq. ID VHI831P
(Link to Original site)
Representative DNA sequence 
>VHI831 (VHI831Q) /CSM/VH/VHI8-B/VHI831Q.Seq.d/
AGCTTTCATTGTCAGTGTGTGTTGATCAATCATCATCATATAAAATTTCTGTTTTTTTTT
ATTATTTTTTTTTATAAATAGAATTATTGTAGATATAGAGTTATATATATATACATATAT
AATAATAATAAAAAAAAAAXXXXXXXXXXCTTAATTCCAACCAATATGATCCCAACCTTG
NATGATCAACTCTCACGTTTACCATTGAAAAATCATGAAAGATTAATTGCAAATATCGCA
ACNTTCTCAGTACCTGCTGAAACTCAATTAGATGGTAGAGAAACTCATCTCGATATCTAT
AGAGATGCAATCAAACGTTGTTTTGAAAATAAAACTACAATTGAACAAGTCATTGAAGCT
TTAGAAAATGAATCTGATAAAACTTATGATTGGGCACAACGTTGTATTAAAAATATTAAT
AAATCATCACCAATTAGTATTAAATTAACAATGAGATTATTTAATGAATCACCAACTGAT
TTATCATCAAATGAATATTTTGAAAGAGATTATAATATTTCAATGGCATTAGTAAATGAT
AGTGAAAGTGATCTTTGGGAAGGTATTAGAGCAAATTTGATTGATAGTAGAGAACCAATT
TGGAGACATAAATCATATACAGAAGTTGATGACAAATTGATTGATGATATCATAAACTAT
AAACCACCAACTGCTGAATCAGTATTAAAATTAACACCATTCAAATCCACTTATTTAATG
TTTGAAGATGTTCTCAATGAATATTTCAATTTAAATCAATTCACTTTATCTGGTGAAGTT
AGATCAGTCTTTGAGGCTCATACTGGTAATCCATTCACAAAGGATTATGATGATGCCATT
GAAATCTTCTTCAAAGGTGCTCGTTCTGATAAATATCAAATCGATAGAAATTCTGCTTCA
ATTCTCAC
sequence update 2002.10.25
Translated Amino Acid sequence 
afivsvc*siiii*NFCFFLLFFFINRIIVDIELYIYTYIIIIKKK---

---LIPTNMIPTLXDQLSRLPLKNHERLIANIATFSVPAETQLDGRETHLDIYRDAIKRC
FENKTTIEQVIEALENESDKTYDWAQRCIKNINKSSPISIKLTMRLFNESPTDLSSNEYF
ERDYNISMALVNDSESDLWEGIRANLIDSREPIWRHKSYTEVDDKLIDDIINYKPPTAES
VLKLTPFKSTYLMFEDVLNEYFNLNQFTLSGEVRSVFEAHTGNPFTKDYDDAIEIFFKGA
RSDKYQIDRNSASIL
Translated Amino Acid sequence (All Frames) 
Frame A:
sfhcqcvlinhhhikflfffiiffyk*nycryrviyiyiynnnkkk---

---lnsnqydpnlx*stltftieks*kinckyrnxlstc*nsirw*rnssryl*rcnqtl
f*k*nyn*tsh*sfrk*i**nl*lgttly*ky**iitn*y*inneii**itn*fiik*if
*krl*yfngisk***k*slgry*skfd***rtnlet*iiyrs**qid**yhkl*ttnc*i
sikintiqihlfnv*rcsq*ifqfksihfiw*s*isl*gsyw*sihkgl**ch*nllqrc
sf**isnr*kfcfnsh

Frame B:
afivsvc*siiii*NFCFFLLFFFINRIIVDIELYIYTYIIIIKKK---

---LIPTNMIPTLXDQLSRLPLKNHERLIANIATFSVPAETQLDGRETHLDIYRDAIKRC
FENKTTIEQVIEALENESDKTYDWAQRCIKNINKSSPISIKLTMRLFNESPTDLSSNEYF
ERDYNISMALVNDSESDLWEGIRANLIDSREPIWRHKSYTEVDDKLIDDIINYKPPTAES
VLKLTPFKSTYLMFEDVLNEYFNLNQFTLSGEVRSVFEAHTGNPFTKDYDDAIEIFFKGA
RSDKYQIDRNSASIL

Frame C:
lslsvcvdqsssykisvffyyffl*iell*i*syiyihi****kk---

---*fqpi*sqpxminshvyh*kimkd*lqisqxsqyllkln*mveklisisiemqsnvv
lkiklqlnkslkl*kmnliklmighnvvlkilinhhqlvln*q*dylmnhqliyhqmnil
keiiifqwh**mivkvifgkvleqi*livenqfgdinhiqklmtn*lmis*tinhqllnq
y*n*hhsnpli*clkmfsmnisi*inslylvkldqslrlilvihsqrimmmplkssskvl
vliniksieillqfs
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHI831 (VHI831Q) /CSM/VH/VHI8-B/VHI831Q.Seq.d/                       1493   0.0
VHJ672 (VHJ672Q) /CSM/VH/VHJ6-C/VHJ672Q.Seq.d/                       1419   0.0
VFM293 (VFM293Q) /CSM/VF/VFM2-D/VFM293Q.Seq.d/                       1370   0.0
VHI249 (VHI249Q) /CSM/VH/VHI2-C/VHI249Q.Seq.d/                       1296   0.0
VHM389 (VHM389Q) /CSM/VH/VHM3-D/VHM389Q.Seq.d/                       1124   0.0
VHI303 (VHI303Q) /CSM/VH/VHI3-A/VHI303Q.Seq.d/                       1088   0.0
SHL577 (SHL577Q) /CSM/SH/SHL5-D/SHL577Q.Seq.d/                         42   0.015
SHE872 (SHE872Q) /CSM/SH/SHE8-C/SHE872Q.Seq.d/                         42   0.015
SFI537 (SFI537Q) /CSM/SF/SFI5-B/SFI537Q.Seq.d/                         42   0.015
AHA566 (AHA566Q) /CSM/AH/AHA5-C/AHA566Q.Seq.d/                         42   0.015
own update 2002.12.31
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ441974) Dictyostelium discoideum cDNA clone:ddv48n08, 3' ...  1493   0.0    1
(BJ435038) Dictyostelium discoideum cDNA clone:ddv25i24, 3' ...  1370   0.0    1
(BJ442698) Dictyostelium discoideum cDNA clone:ddv50o18, 3' ...  1352   0.0    2
(BJ441677) Dictyostelium discoideum cDNA clone:ddv47a14, 3' ...  1296   0.0    1
(BJ444246) Dictyostelium discoideum cDNA clone:ddv55b23, 3' ...  1057   0.0    2
(BJ441549) Dictyostelium discoideum cDNA clone:ddv47f01, 3' ...   656   0.0    3
(BJ423210) Dictyostelium discoideum cDNA clone:ddv48n08, 5' ...   101   1e-22  2
(BJ423884) Dictyostelium discoideum cDNA clone:ddv50o18, 5' ...    88   1e-18  2
(BJ416343) Dictyostelium discoideum cDNA clone:ddv25i24, 5' ...    88   1e-18  2
(BJ425449) Dictyostelium discoideum cDNA clone:ddv55b23, 5' ...    42   3e-11  3
dna update 2008.11.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000739_658(CP000739|pid:none) Sinorhizobium medicae WSM419 pla...    52   4e-05
AM428196_2(AM428196|pid:none) Vitis vinifera contig VV78X040591....    49   3e-04
A84711(A84711) 3-hydroxyisobutyryl-coenzyme A hydrolase [importe...    48   5e-04
AM458201_2(AM458201|pid:none) Vitis vinifera contig VV78X173640....    48   5e-04
BT043030_1(BT043030|pid:none) Zea mays full-length cDNA clone ZM...    47   7e-04
AK229190_1(AK229190|pid:none) Arabidopsis thaliana mRNA for enoy...    47   9e-04
AL591985_1456(AL591985|pid:none) Sinorhizobium meliloti 1021 pla...    47   9e-04
(Q5ZJ60) RecName: Full=3-hydroxyisobutyryl-CoA hydrolase, mitoch...    46   0.002
BT037025_1(BT037025|pid:none) Zea mays full-length cDNA clone ZM...    45   0.003
AB018108_11(AB018108|pid:none) Arabidopsis thaliana genomic DNA,...    43   0.017
protein update 2009. 7.14
PSORT 

 psg: 1.04  gvh: 0.44  alm: 0.26  top: 0.40  tms: 0.07  mit: 0.29  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 20.0 %: cytoplasmic
	 16.0 %: mitochondrial
	 16.0 %: nuclear
	  8.0 %: plasma membrane
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system
	  4.0 %: extracellular, including cell wall

>> prediction for VHI831 is end
5' end seq. ID VHI831F
5' end seq. 
>VHI831F.Seq
AGCTTTCATTGTCAGTGTGTGTTGATCAATCATCATCATATAAAATTTCTGTTTTTTTTT
ATTATTTTTTTTTATAAATAGAATTATTGTAGATATAGAGTTATATATATATACATATAT
AATAATAATAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 149
3' end seq. ID VHI831Z
3' end seq. 
>VHI831Z.Seq
NNNNNNNNNNCTTAATTCCAACCAATATGATCCCAACCTTGNATGATCAACTCTCACGTT
TACCATTGAAAAATCATGAAAGATTAATTGCAAATATCGCAACNTTCTCAGTACCTGCTG
AAACTCAATTAGATGGTAGAGAAACTCATCTCGATATCTATAGAGATGCAATCAAACGTT
GTTTTGAAAATAAAACTACAATTGAACAAGTCATTGAAGCTTTAGAAAATGAATCTGATA
AAACTTATGATTGGGCACAACGTTGTATTAAAAATATTAATAAATCATCACCAATTAGTA
TTAAATTAACAATGAGATTATTTAATGAATCACCAACTGATTTATCATCAAATGAATATT
TTGAAAGAGATTATAATATTTCAATGGCATTAGTAAATGATAGTGAAAGTGATCTTTGGG
AAGGTATTAGAGCAAATTTGATTGATAGTAGAGAACCAATTTGGAGACATAAATCATATA
CAGAAGTTGATGACAAATTGATTGATGATATCATAAACTATAAACCACCAACTGCTGAAT
CAGTATTAAAATTAACACCATTCAAATCCACTTATTTAATGTTTGAAGATGTTCTCAATG
AATATTTCAATTTAAATCAATTCACTTTATCTGGTGAAGTTAGATCAGTCTTTGAGGCTC
ATACTGGTAATCCATTCACAAAGGATTATGATGATGCCATTGAAATCTTCTTCAAAGGTG
CTCGTTCTGATAAATATCAAATCGATAGAAATTCTGCTTCAATTCTCAC
Length of 3' end seq. 769
Connected seq. ID VHI831P
Connected seq. 
>VHI831P.Seq
AGCTTTCATTGTCAGTGTGTGTTGATCAATCATCATCATATAAAATTTCTGTTTTTTTTT
ATTATTTTTTTTTATAAATAGAATTATTGTAGATATAGAGTTATATATATATACATATAT
AATAATAATAAAAAAAAAA----------CTTAATTCCAACCAATATGATCCCAACCTTG
NATGATCAACTCTCACGTTTACCATTGAAAAATCATGAAAGATTAATTGCAAATATCGCA
ACNTTCTCAGTACCTGCTGAAACTCAATTAGATGGTAGAGAAACTCATCTCGATATCTAT
AGAGATGCAATCAAACGTTGTTTTGAAAATAAAACTACAATTGAACAAGTCATTGAAGCT
TTAGAAAATGAATCTGATAAAACTTATGATTGGGCACAACGTTGTATTAAAAATATTAAT
AAATCATCACCAATTAGTATTAAATTAACAATGAGATTATTTAATGAATCACCAACTGAT
TTATCATCAAATGAATATTTTGAAAGAGATTATAATATTTCAATGGCATTAGTAAATGAT
AGTGAAAGTGATCTTTGGGAAGGTATTAGAGCAAATTTGATTGATAGTAGAGAACCAATT
TGGAGACATAAATCATATACAGAAGTTGATGACAAATTGATTGATGATATCATAAACTAT
AAACCACCAACTGCTGAATCAGTATTAAAATTAACACCATTCAAATCCACTTATTTAATG
TTTGAAGATGTTCTCAATGAATATTTCAATTTAAATCAATTCACTTTATCTGGTGAAGTT
AGATCAGTCTTTGAGGCTCATACTGGTAATCCATTCACAAAGGATTATGATGATGCCATT
GAAATCTTCTTCAAAGGTGCTCGTTCTGATAAATATCAAATCGATAGAAATTCTGCTTCA
ATTCTCAC
Length of connected seq. 898
Full length Seq ID -
Full length Seq. -
Length of full length seq. -