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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHI820
Library VH
(Link to library)
Clone ID VHI820
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16290-1
Original site URL
Representative seq. ID VHI820P
(Link to Original site)
Representative DNA sequence 
>VHI820 (VHI820Q) /CSM/VH/VHI8-A/VHI820Q.Seq.d/
AAAAATAACATTATTACCTTTTGATAAACAAGAATAAAAATTTCATTTTTATTTTTAATT
ACTATTACAATTTTTTTTAAAATCAATACCTCAATTACTATTACTCAATTAAAGTAACAA
TATGTCTGTATTCAAGAAAAAAGATAAATCTGATGACAAAAAGAAAAAACATGACGAAGT
TGATAATAAAAAAATAGAGACTCCACAAGGAACATTTCAACCAGCAAGTCAATCAACATC
AAATACCAATTTAAATTCATTAGCATCATCAGTTAACAATGGTGCAAGTGTAGGTTCAAC
CAATGGTTCAACACCAAATAATTCCAATGGATCAACACCAACCTATAATCATAACAACTC
TGCAGAGGAGCTTGAAAAACAAAAGAAAGAAGAGGATGAAAAAAGAAAGAAATCAGAATT
GGAGGCTGCTGCAGCCGTAGTTGCTAAAAAGAAAGAAGATGAAGAGAAACAAAGAAAAGA
ACAAGTTGAACTTGAAAGAAAAAGACGTGACGAAGAAAXXXXXXXXXXGTTCCATTGATT
GAACAATTGTGTGAACGTGCCATGTACATTATGAAAAGATTAACCGATATCGCTGATAAA
GTTATCGATAGTCGTAGAAAGAGTCGTTGTATTGGTTCATCACCATTTGGCGGTAACGGT
TTAAATAATATTAACAGCGGCGGCAATAATGGCATCAACATCAATGATCGTTTATCAAAT
ACTGATATGGATAGTTTAGATCAATATCCATTCTTTACTCATCATGTAAAGAATCTTTAT
TATGATTTCGTTCATAGAGCTGCCAAAGGTTGTAAAGAGAAATGTATGGACGAATTCTAT
TCTTCAAGAACTATCTATTGGGAATTAACTGAACATCCAGATAGTTCATTACCAAGTATT
AGAAATGATCATCATGAAACTAAAACTGCTGTTTGTCAATTGGCTACAAAATTATTTGAT
TCCATTCGTCAAAGAATCACTAAAAATGTTTTATTAAAGTTATACAATTTCTTTTTGGTA
CCAATGCAAACTGACCTTTGGAATGAAATTCAAGCTCAAATCACTTGTCTCTCAAATGAA
CAATTGGAACAACTCTTTGAAGTTCAAGCAACTCGTGAACAATTAAAACAAGAAGAAAAG
AAACAACAACAAATTTTAGAAAAATATTCTCAAATTGATGAGCAATTTTTAAAAGCTGCT
TCATTATTTTGTAGACCATTATCTAATCCAACTCCATCTGCTTAAAAATAAAATTATAAA
TAAATAAATAAATAAAAAAAAAT
sequence update 2002.10.25
Translated Amino Acid sequence 
kitllpfdkqe*kfhfyf*lllqfflksipqlllln*SNNMSVFKKKDKSDDKKKKHDEV
DNKKIETPQGTFQPASQSTSNTNLNSLASSVNNGASVGSTNGSTPNNSNGSTPTYNHNNS
AEELEKQKKEEDEKRKKSELEAAAAVVAKKKEDEEKQRKEQVELERKRRDEE---

---VPLIEQLCERAMYIMKRLTDIADKVIDSRRKSRCIGSSPFGGNGLNNINSGGNNGIN
INDRLSNTDMDSLDQYPFFTHHVKNLYYDFVHRAAKGCKEKCMDEFYSSRTIYWELTEHP
DSSLPSIRNDHHETKTAVCQLATKLFDSIRQRITKNVLLKLYNFFLVPMQTDLWNEIQAQ
ITCLSNEQLEQLFEVQATREQLKQEEKKQQQILEKYSQIDEQFLKAASLFCRPLSNPTPS
A*k*nyk*ink*kk
Translated Amino Acid sequence (All Frames) 
Frame A:
knniitf**trikisflflititiffkintsititqlk*qyvciqekr*i**qkekt*rs
***knrdstrnistsksinikyqfkfisiis*qwckcrfnqwfntk*fqwintnl*s*ql
crga*ktkerrg*kkkeiriggccsrsc*kerr*retkkrts*t*kkkt*rr---

---VPLIEQLCERAMYIMKRLTDIADKVIDSRRKSRCIGSSPFGGNGLNNINSGGNNGIN
INDRLSNTDMDSLDQYPFFTHHVKNLYYDFVHRAAKGCKEKCMDEFYSSRTIYWELTEHP
DSSLPSIRNDHHETKTAVCQLATKLFDSIRQRITKNVLLKLYNFFLVPMQTDLWNEIQAQ
ITCLSNEQLEQLFEVQATREQLKQEEKKQQQILEKYSQIDEQFLKAASLFCRPLSNPTPS
A*k*nyk*ink*kk

Frame B:
kitllpfdkqe*kfhfyf*lllqfflksipqlllln*SNNMSVFKKKDKSDDKKKKHDEV
DNKKIETPQGTFQPASQSTSNTNLNSLASSVNNGASVGSTNGSTPNNSNGSTPTYNHNNS
AEELEKQKKEEDEKRKKSELEAAAAVVAKKKEDEEKQRKEQVELERKRRDEE---

---fh*lnncvnvpctl*kd*pisliklsivvervvvlvhhhlavtv*iiltaaaimast
smivyqiliwiv*inihsllim*rifimisfielpkvvkrnvwtnsilqelsign*lniq
ivhyqvlemiimklkllfvnwlqnylipfvkeslkmfy*sytisfwyqckltfgmkfklk
slvsqmnnwnnslkfkqlvnn*nkkkrnnnkf*knilklmsnf*kllhyfvdhyliqlhl
lknkiink*inkkk

Frame C:
k*hyyllinknknfififnyyynff*nqylnyyysikvticlysrkkinlmtkrknmtkl
iikk*rlhkehfnqqvnqhqipi*ih*hhqltmvqv*vqpmvqhqiipmdqhqpiiittl
qrslknkrkkrmkkernqnwrllqp*llkrkkmkrnkeknklnlkekdvtkk---

---sid*tiv*tchvhyekinryr**syr*s*keslywfitiwr*rfk*y*qrrq*whqh
q*sfiky*yg*frsisilyssckesll*frs*scqrl*remygrilffknyllgin*tsr
*fitky*k*ss*n*ncclsigykii*fhssknh*kcfikviqflfgtnan*ple*nsssn
hlslk*tigttl*sssns*tiktrrketttnfrkifsn**aifkscfiil*tii*snsic
lkikl*ink*ikkn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHI820 (VHI820Q) /CSM/VH/VHI8-A/VHI820Q.Seq.d/                       1415   0.0
SHA511 (SHA511Q) /CSM/SH/SHA5-A/SHA511Q.Seq.d/                       1415   0.0
VHP620 (VHP620Q) /CSM/VH/VHP6-A/VHP620Q.Seq.d/                       1407   0.0
VHA558 (VHA558Q) /CSM/VH/VHA5-C/VHA558Q.Seq.d/                       1407   0.0
SHJ851 (SHJ851Q) /CSM/SH/SHJ8-C/SHJ851Q.Seq.d/                       1407   0.0
AHE152 (AHE152Q) /CSM/AH/AHE1-C/AHE152Q.Seq.d/                       1407   0.0
AHC369 (AHC369Q) /CSM/AH/AHC3-C/AHC369Q.Seq.d/                       1407   0.0
AHM524 (AHM524Q) /CSM/AH/AHM5-A/AHM524Q.Seq.d/                       1403   0.0
SHC894 (SHC894Q) /CSM/SH/SHC8-D/SHC894Q.Seq.d/                       1400   0.0
CHI669 (CHI669Q) /CSM/CH/CHI6-C/CHI669Q.Seq.d/                       1400   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ441861) Dictyostelium discoideum cDNA clone:ddv48h06, 3' ...  1413   0.0    1
(BJ403408) Dictyostelium discoideum cDNA clone:dds25e03, 3' ...  1413   0.0    1
(BJ446235) Dictyostelium discoideum cDNA clone:ddv62g06, 3' ...  1405   0.0    1
(BJ436878) Dictyostelium discoideum cDNA clone:ddv32c15, 3' ...  1405   0.0    1
(BJ407761) Dictyostelium discoideum cDNA clone:dds43f14, 3' ...  1405   0.0    1
(BJ350355) Dictyostelium discoideum cDNA clone:dda39g13, 3' ...  1405   0.0    1
(BJ349170) Dictyostelium discoideum cDNA clone:dda35j17, 3' ...  1405   0.0    1
(BJ355249) Dictyostelium discoideum cDNA clone:dda56o05, 3' ...  1402   0.0    1
(BJ404879) Dictyostelium discoideum cDNA clone:dds29l24, 3' ...  1398   0.0    1
(BJ380877) Dictyostelium discoideum cDNA clone:ddc39i18, 3' ...  1398   0.0    1
dna update 2008.11.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55F94) RecName: Full=Dynamin-like protein A;          EC=3.6.5...   404   e-111
(Q54MH8) RecName: Full=Dynamin-like protein B;          EC=3.6.5...   136   2e-30
(Q55AX0) RecName: Full=Dynamin-like protein C;          EC=3.6.5...    50   2e-04
AC116982_36(AC116982|pid:none) Dictyostelium discoideum chromoso...    50   2e-04
AB426138_1(AB426138|pid:none) Physcomitrella patens PpDRP5B-2 ge...    43   0.021
AP009552_5662(AP009552|pid:none) Microcystis aeruginosa NIES-843...    35   7.6
protein update 2009. 7.14
PSORT 

 psg: 0.11  gvh: 0.41  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.34  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: nuclear
	 24.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for VHI820 is nuc
5' end seq. ID VHI820F
5' end seq. 
>VHI820F.Seq
AAAAATAACATTATTACCTTTTGATAAACAAGAATAAAAATTTCATTTTTATTTTTAATT
ACTATTACAATTTTTTTTAAAATCAATACCTCAATTACTATTACTCAATTAAAGTAACAA
TATGTCTGTATTCAAGAAAAAAGATAAATCTGATGACAAAAAGAAAAAACATGACGAAGT
TGATAATAAAAAAATAGAGACTCCACAAGGAACATTTCAACCAGCAAGTCAATCAACATC
AAATACCAATTTAAATTCATTAGCATCATCAGTTAACAATGGTGCAAGTGTAGGTTCAAC
CAATGGTTCAACACCAAATAATTCCAATGGATCAACACCAACCTATAATCATAACAACTC
TGCAGAGGAGCTTGAAAAACAAAAGAAAGAAGAGGATGAAAAAAGAAAGAAATCAGAATT
GGAGGCTGCTGCAGCCGTAGTTGCTAAAAAGAAAGAAGATGAAGAGAAACAAAGAAAAGA
ACAAGTTGAACTTGAAAGAAAAAGACGTGACGAAGAAANNNNNNNNNN
Length of 5' end seq. 528
3' end seq. ID VHI820Z
3' end seq. 
>VHI820Z.Seq
NNNNNNNNNNGTTCCATTGATTGAACAATTGTGTGAACGTGCCATGTACATTATGAAAAG
ATTAACCGATATCGCTGATAAAGTTATCGATAGTCGTAGAAAGAGTCGTTGTATTGGTTC
ATCACCATTTGGCGGTAACGGTTTAAATAATATTAACAGCGGCGGCAATAATGGCATCAA
CATCAATGATCGTTTATCAAATACTGATATGGATAGTTTAGATCAATATCCATTCTTTAC
TCATCATGTAAAGAATCTTTATTATGATTTCGTTCATAGAGCTGCCAAAGGTTGTAAAGA
GAAATGTATGGACGAATTCTATTCTTCAAGAACTATCTATTGGGAATTAACTGAACATCC
AGATAGTTCATTACCAAGTATTAGAAATGATCATCATGAAACTAAAACTGCTGTTTGTCA
ATTGGCTACAAAATTATTTGATTCCATTCGTCAAAGAATCACTAAAAATGTTTTATTAAA
GTTATACAATTTCTTTTTGGTACCAATGCAAACTGACCTTTGGAATGAAATTCAAGCTCA
AATCACTTGTCTCTCAAATGAACAATTGGAACAACTCTTTGAAGTTCAAGCAACTCGTGA
ACAATTAAAACAAGAAGAAAAGAAACAACAACAAATTTTAGAAAAATATTCTCAAATTGA
TGAGCAATTTTTAAAAGCTGCTTCATTATTTTGTAGACCATTATCTAATCCAACTCCATC
TGCTTAAAAATAAAATTATAAATAAATAAATAAATAAAAAAAAAT
Length of 3' end seq. 765
Connected seq. ID VHI820P
Connected seq. 
>VHI820P.Seq
AAAAATAACATTATTACCTTTTGATAAACAAGAATAAAAATTTCATTTTTATTTTTAATT
ACTATTACAATTTTTTTTAAAATCAATACCTCAATTACTATTACTCAATTAAAGTAACAA
TATGTCTGTATTCAAGAAAAAAGATAAATCTGATGACAAAAAGAAAAAACATGACGAAGT
TGATAATAAAAAAATAGAGACTCCACAAGGAACATTTCAACCAGCAAGTCAATCAACATC
AAATACCAATTTAAATTCATTAGCATCATCAGTTAACAATGGTGCAAGTGTAGGTTCAAC
CAATGGTTCAACACCAAATAATTCCAATGGATCAACACCAACCTATAATCATAACAACTC
TGCAGAGGAGCTTGAAAAACAAAAGAAAGAAGAGGATGAAAAAAGAAAGAAATCAGAATT
GGAGGCTGCTGCAGCCGTAGTTGCTAAAAAGAAAGAAGATGAAGAGAAACAAAGAAAAGA
ACAAGTTGAACTTGAAAGAAAAAGACGTGACGAAGAAA----------GTTCCATTGATT
GAACAATTGTGTGAACGTGCCATGTACATTATGAAAAGATTAACCGATATCGCTGATAAA
GTTATCGATAGTCGTAGAAAGAGTCGTTGTATTGGTTCATCACCATTTGGCGGTAACGGT
TTAAATAATATTAACAGCGGCGGCAATAATGGCATCAACATCAATGATCGTTTATCAAAT
ACTGATATGGATAGTTTAGATCAATATCCATTCTTTACTCATCATGTAAAGAATCTTTAT
TATGATTTCGTTCATAGAGCTGCCAAAGGTTGTAAAGAGAAATGTATGGACGAATTCTAT
TCTTCAAGAACTATCTATTGGGAATTAACTGAACATCCAGATAGTTCATTACCAAGTATT
AGAAATGATCATCATGAAACTAAAACTGCTGTTTGTCAATTGGCTACAAAATTATTTGAT
TCCATTCGTCAAAGAATCACTAAAAATGTTTTATTAAAGTTATACAATTTCTTTTTGGTA
CCAATGCAAACTGACCTTTGGAATGAAATTCAAGCTCAAATCACTTGTCTCTCAAATGAA
CAATTGGAACAACTCTTTGAAGTTCAAGCAACTCGTGAACAATTAAAACAAGAAGAAAAG
AAACAACAACAAATTTTAGAAAAATATTCTCAAATTGATGAGCAATTTTTAAAAGCTGCT
TCATTATTTTGTAGACCATTATCTAATCCAACTCCATCTGCTTAAAAATAAAATTATAAA
TAAATAAATAAATAAAAAAAAAT
Length of connected seq. 1273
Full length Seq ID -
Full length Seq. -
Length of full length seq. -