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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHI795
Library VH
(Link to library)
Clone ID VHI795
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13930-1
Original site URL
Representative seq. ID VHI795P
(Link to Original site)
Representative DNA sequence 
>VHI795 (VHI795Q) /CSM/VH/VHI7-D/VHI795Q.Seq.d/
AACTACAAATATAAAAACAAATACAAATACAAAAAAAAAAANGTNTTAATAAATAAATTA
ATAAATTTTTAATAAATAAATAAATAAAATAAATTAAAANGATNGCCAAAGTTTTCAAAT
CAATTACCCCANAATCATACATTTTATTAGTCANCGCTGGTTNAATTTCANCCTATGGNG
TTANAATTATTTTCCAAAGNGTTAAAANCNATNAAGGTAAAGTCNATNAAAAANCTCACA
TNGGTATNGGCCATTTNTTCAAAAANANAGGNGCTCANCTTGTTGANGGAAANAACTTAN
CCGATTTTTAAAAGGAAAAAAAAAAXXXXXXXXXXAAAAAAAAAAAGTATTAATAAATAN
ATTAATAAATTTTTAATAAATANGATAAATAAAATAAATTAAAATGATTGCCAAAGTTTT
CAAATCAATNACCCCAGNGATCATACATTTTATTAGTCAACGCTGGTTTAATTTCAGCCT
ATGGTGNNAAAAAAAAAAAANAAANAAAAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
nykyknkykykkkxvlinklinf**ink*nklkxxpkfsnqlpxnhtfy*SXLVXFXPMX
LXLFSKXLKXXKVKSXKXLTXVXAIXSKXXXLXLLXEXTXPIFKRKKK---

---KKKSINKXINKFLINXINKIN*ndcqsfqinxpxdhtfy*stlv*fqpmvxkkkxkx
kk
Translated Amino Acid sequence (All Frames) 
Frame A:
nykyknkykykkkxvlinklinf**ink*nklkxxpkfsnqlpxnhtfy*SXLVXFXPMX
LXLFSKXLKXXKVKSXKXLTXVXAIXSKXXXLXLLXEXTXPIFKRKKK---

---kkkky**ix**ifnkxdk*nklk*lpkfsnqxpqxsyillvnaglisaygxkkkkxx
kk

Frame B:
ttniktntntkkkxx**in**ifnk*inkin*xdxqsfqinypxiihfisxrwxnfxlwx
xnyfpkx*xxxr*sxxkxshxyxpfxqkxrxsxc*xkxlxrflkgkkk---

---KKKSINKXINKFLINXINKIN*ndcqsfqinxpxdhtfy*stlv*fqpmvxkkkxkx
kk

Frame C:
lqi*kqiqiqkkkxxnk*inkflink*ik*ikxxakvfksitpxsyillvxagxisxygv
xiifqxvkxxxgkvxxkxhxgxghxfkxxgaxlvxgxnlxdf*kekk---

---kkkvlinxlinf**ix*ik*ikmiakvfksxtpxiihfisqrwfnfslwxxkkkxxk
k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSJ179 (VSJ179Q) /CSM/VS/VSJ1-D/VSJ179Q.Seq.d/                        272   5e-72
VSI367 (VSI367Q) /CSM/VS/VSI3-C/VSI367Q.Seq.d/                        272   5e-72
VSD324 (VSD324Q) /CSM/VS/VSD3-A/VSD324Q.Seq.d/                        272   5e-72
VHI795 (VHI795Q) /CSM/VH/VHI7-D/VHI795Q.Seq.d/                        272   5e-72
AFG425 (AFG425Q) /CSM/AF/AFG4-B/AFG425Q.Seq.d/                        272   5e-72
VSJ875 (VSJ875Q) /CSM/VS/VSJ8-D/VSJ875Q.Seq.d/                        266   3e-70
VSJ718 (VSJ718Q) /CSM/VS/VSJ7-A/VSJ718Q.Seq.d/                        266   3e-70
VSJ189 (VSJ189Q) /CSM/VS/VSJ1-D/VSJ189Q.Seq.d/                        266   3e-70
VSG687 (VSG687Q) /CSM/VS/VSG6-D/VSG687Q.Seq.d/                        266   3e-70
VSJ463 (VSJ463Q) /CSM/VS/VSJ4-C/VSJ463Q.Seq.d/                        264   1e-69
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU269529) Dictyostelium discoideum vegetative cDNA clone:VS...   272   1e-68  1
(AU268585) Dictyostelium discoideum vegetative cDNA clone:VS...   272   1e-68  1
(AU263840) Dictyostelium discoideum vegetative cDNA clone:VS...   272   1e-68  1
(BJ423363) Dictyostelium discoideum cDNA clone:ddv48n23, 5' ...   272   1e-68  1
(BJ325202) Dictyostelium discoideum cDNA clone:dda13b08, 5' ...   272   1e-68  1
(AU270616) Dictyostelium discoideum vegetative cDNA clone:VS...   266   7e-67  1
(AU270361) Dictyostelium discoideum vegetative cDNA clone:VS...   266   7e-67  1
(AU269546) Dictyostelium discoideum vegetative cDNA clone:VS...   266   7e-67  1
(AU266726) Dictyostelium discoideum vegetative cDNA clone:VS...   266   7e-67  1
(AU269958) Dictyostelium discoideum vegetative cDNA clone:VS...   264   3e-66  1
dna update 2008.11.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB292732_1(AB292732|pid:none) Dictyostelium discoideum srsA mRNA...    57   3e-07
protein update 2009. 3.11
PSORT 

 psg: 0.89  gvh: 0.56  alm: 0.44  top: 0.80  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.38  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 16.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: plasma membrane
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for VHI795 is nuc
5' end seq. ID VHI795F
5' end seq. 
>VHI795F.Seq
AACTACAAATATAAAAACAAATACAAATACAAAAAAAAAAANGTNTTAATAAATAAATTA
ATAAATTTTTAATAAATAAATAAATAAAATAAATTAAAANGATNGCCAAAGTTTTCAAAT
CAATTACCCCANAATCATACATTTTATTAGTCANCGCTGGTTNAATTTCANCCTATGGNG
TTANAATTATTTTCCAAAGNGTTAAAANCNATNAAGGTAAAGTCNATNAAAAANCTCACA
TNGGTATNGGCCATTTNTTCAAAAANANAGGNGCTCANCTTGTTGANGGAAANAACTTAN
CCGATTTTTAAAAGGAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 335
3' end seq. ID VHI795Z
3' end seq. 
>VHI795Z.Seq
NNNNNNNNNNAAAAAAAAAAAGTATTAATAAATANATTAATAAATTTTTAATAAATANGA
TAAATAAAATAAATTAAAATGATTGCCAAAGTTTTCAAATCAATNACCCCAGNGATCATA
CATTTTATTAGTCAACGCTGGTTTAATTTCAGCCTATGGTGNNAAAAAAAAAAAANAAAN
AAAAAAAA
Length of 3' end seq. 188
Connected seq. ID VHI795P
Connected seq. 
>VHI795P.Seq
AACTACAAATATAAAAACAAATACAAATACAAAAAAAAAAANGTNTTAATAAATAAATTA
ATAAATTTTTAATAAATAAATAAATAAAATAAATTAAAANGATNGCCAAAGTTTTCAAAT
CAATTACCCCANAATCATACATTTTATTAGTCANCGCTGGTTNAATTTCANCCTATGGNG
TTANAATTATTTTCCAAAGNGTTAAAANCNATNAAGGTAAAGTCNATNAAAAANCTCACA
TNGGTATNGGCCATTTNTTCAAAAANANAGGNGCTCANCTTGTTGANGGAAANAACTTAN
CCGATTTTTAAAAGGAAAAAAAAAA----------AAAAAAAAAAAGTATTAATAAATAN
ATTAATAAATTTTTAATAAATANGATAAATAAAATAAATTAAAATGATTGCCAAAGTTTT
CAAATCAATNACCCCAGNGATCATACATTTTATTAGTCAACGCTGGTTTAATTTCAGCCT
ATGGTGNNAAAAAAAAAAAANAAANAAAAAAAA
Length of connected seq. 503
Full length Seq ID -
Full length Seq. -
Length of full length seq. -