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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHI790
Library VH
(Link to library)
Clone ID VHI790
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16440-1
Original site URL
Representative seq. ID VHI790P
(Link to Original site)
Representative DNA sequence 
>VHI790 (VHI790Q) /CSM/VH/VHI7-D/VHI790Q.Seq.d/
ATATTATTTTTCTTCACTATCTGTTTATATAAACAAATTGGAGGAAATTATAAAATGAAG
ATTTCATCTATTTTATTTATTTTTATAGCGATTATTGTTGGCTTAGCACTTTCACAAAAT
ACTATTCCAACTTATAAGCAAAACAGCATTAATTGGAAGCAATTTCAACCATTATATACA
AATAAAGATGATTATGTATTAATTGTAGATACAAGATCAAAGAATGTTTTAAAAAGATCA
ACAAATGGTGGTATTGATTGGTCATCAAATGTACTTGATAAACAAGGAAATATTATTTAT
GGTAATGCAGGATATTATCAAAGAGATGATAATATTATGGTTGTAAATTTCCCATCTTAT
GGAAAAACCCAAATTTCAGTATCAAATGATGCAGGTCAAACATTTTCAACCTCAGCAGTT
TTTCCACATAAAGTTGTATCAGTTTCACCACATTTAGATATTGAGGGTTTAGTGATTGCA
CGTTCCGATAATTTCATTTTAATTAGTGAAGATTTTGGTTTAACATGGAACAATGCATCA
TCCAATGGTGATGTTTXXXXXXXXXXTCCTTGCGATGATTCCTCAATGCAATCTTATACC
ACTCGTTGTATTTTAGGTGAAAAAACAACTTATAGAACTGTTAAACCAAATACCAATTGT
TATATGACCCAACAAGCACAAATTTCAAATAAATATTGTGAATGTACAGTCGAAGATTTT
GAATGTGATATTGGTTACGAAAGTGCAGACGATAGCAGTTCCGATAATGATGGTTCTACC
TCTGGTATTCCATCTGGATCTTCAGAACAATTGAATTGTCGTAAATCAATTGCTTCACAA
TATGTTCCAATCACTGAAGAAAATTGTACACCAGGTCAAACCTATATCAAATCAAAAGGT
TTCAGAAGAGTCGCTGCCACACAATGTGTAGGTGGTGTTAATGCAACTTATTCACCAGAG
ATTGTCATGTGTCCATCAAAAAATTCTTCAAGTGGTGGCAAAGGTTGGATCGCTGGTGTT
GTTATTGCTATTCTTGCTTTAGCTGGTCTTGGTGGTTTTGGTTTCTACGTTTTTAAGAAT
CCAGATTTCAAACAAAAATTATTAAAAATGGTTGGTTTTTCAAAGGTCGGTCCAAAATAT
AGTGTTATCGGTATTAAACCAAACTCATTAGCTGATGATGAATTTGGTATTGAAGATGAT
GATGCTCAAATTTTAAANATAANATTTACAAGATAACGAAGATTTTTAAAAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
ILFFFTICLYKQIGGNYKMKISSILFIFIAIIVGLALSQNTIPTYKQNSINWKQFQPLYT
NKDDYVLIVDTRSKNVLKRSTNGGIDWSSNVLDKQGNIIYGNAGYYQRDDNIMVVNFPSY
GKTQISVSNDAGQTFSTSAVFPHKVVSVSPHLDIEGLVIARSDNFILISEDFGLTWNNAS
SNGDV---

---PCDDSSMQSYTTRCILGEKTTYRTVKPNTNCYMTQQAQISNKYCECTVEDFECDIGY
ESADDSSSDNDGSTSGIPSGSSEQLNCRKSIASQYVPITEENCTPGQTYIKSKGFRRVAA
TQCVGGVNATYSPEIVMCPSKNSSSGGKGWIAGVVIAILALAGLGGFGFYVFKNPDFKQK
LLKMVGFSKVGPKYSVIGIKPNSLADDEFGIEDDDAQILXIXFTR*rrflkk
Translated Amino Acid sequence (All Frames) 
Frame A:
ILFFFTICLYKQIGGNYKMKISSILFIFIAIIVGLALSQNTIPTYKQNSINWKQFQPLYT
NKDDYVLIVDTRSKNVLKRSTNGGIDWSSNVLDKQGNIIYGNAGYYQRDDNIMVVNFPSY
GKTQISVSNDAGQTFSTSAVFPHKVVSVSPHLDIEGLVIARSDNFILISEDFGLTWNNAS
SNGDV---

---slr*flnailyhslyfr*knnl*nc*tkyqllydptstnfk*il*mysrrf*m*ywl
rkcrr*qfr**wfylwysiwifrtiels*incfticsnh*rklytrsnlyqikrfqksrc
htmcrwc*cnlftrdchvsikkffkwwqrldrwccycyscfswswwfwflrf*esrfqtk
iikngwffkgrski*cyry*tklis***iwy*r**csnfkxxiykitkifkk

Frame B:
yyfsslsvyinkleeiik*rfhlfylfl*rllla*hfhkilfqlisktaligsnfnhyiq
ikmimy*l*iqdqrmf*kdqqmvvlighqmylinkeilfmvmqdiikemiilwl*ishlm
ekpkfqyqmmqvkhfqpqqffhiklyqfhhi*ilrv**lhvpiisf*lvkilv*hgtmhh
pmvmf---

---PCDDSSMQSYTTRCILGEKTTYRTVKPNTNCYMTQQAQISNKYCECTVEDFECDIGY
ESADDSSSDNDGSTSGIPSGSSEQLNCRKSIASQYVPITEENCTPGQTYIKSKGFRRVAA
TQCVGGVNATYSPEIVMCPSKNSSSGGKGWIAGVVIAILALAGLGGFGFYVFKNPDFKQK
LLKMVGFSKVGPKYSVIGIKPNSLADDEFGIEDDDAQILXIXFTR*rrflkk

Frame C:
iiflhylfi*tnwrkl*nedfiyfiyfysdycwlstftkyysnl*akqh*leaistiiyk
*r*lcincrykikecfkkinkwwy*lvikct**trkyylw*crilskr**yygckfpilw
knpnfsik*crsnifnlssfst*scisfttfry*gfsdctfr*fhfn**rfwfnmeqcii
qw*c---

---lamipqcnliplvvf*vkkqliellnqipivi*pnkhkfqinivnvqskilnvilvt
kvqtiavpimmvlplvfhldlqnn*ivvnqllhnmfqslkkivhqvkpisnqkvseeslp
hnv*vvlmqlihqrlscvhqkilqvvakvgslvllllfll*lvlvvlvstflriqisnkn
y*kwlvfqrsvqnivlsvlnqth*lmmnlvlkmmmlkf*x*xlqdnedf*kk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHI790 (VHI790Q) /CSM/VH/VHI7-D/VHI790Q.Seq.d/                       2401   0.0
VHQ202 (VHQ202Q) /CSM/VH/VHQ2-A/VHQ202Q.Seq.d/                       1338   0.0
VHO888 (VHO888Q) /CSM/VH/VHO8-D/VHO888Q.Seq.d/                       1338   0.0
VHD665 (VHD665Q) /CSM/VH/VHD6-C/VHD665Q.Seq.d/                       1338   0.0
VHD543 (VHD543Q) /CSM/VH/VHD5-B/VHD543Q.Seq.d/                       1338   0.0
CHL654 (CHL654Q) /CSM/CH/CHL6-C/CHL654Q.Seq.d/                       1338   0.0
CHE841 (CHE841Q) /CSM/CH/CHE8-B/CHE841Q.Seq.d/                       1338   0.0
VHP738 (VHP738Q) /CSM/VH/VHP7-B/VHP738Q.Seq.d/                       1336   0.0
VHP639 (VHP639Q) /CSM/VH/VHP6-B/VHP639Q.Seq.d/                       1336   0.0
VHK806 (VHK806Q) /CSM/VH/VHK8-A/VHK806Q.Seq.d/                       1336   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ446532) Dictyostelium discoideum cDNA clone:ddv63c02, 3' ...  1338   0.0    1
(BJ445893) Dictyostelium discoideum cDNA clone:ddv60p22, 3' ...  1338   0.0    1
(BJ442080) Dictyostelium discoideum cDNA clone:ddv48d23, 3' ...  1338   0.0    1
(BJ438791) Dictyostelium discoideum cDNA clone:ddv38a18, 3' ...  1338   0.0    1
(BJ438731) Dictyostelium discoideum cDNA clone:ddv38e11, 3' ...  1338   0.0    1
(BJ382707) Dictyostelium discoideum cDNA clone:ddc45k14, 3' ...  1338   0.0    1
(BJ378241) Dictyostelium discoideum cDNA clone:ddc31b12, 3' ...  1338   0.0    1
(BJ446342) Dictyostelium discoideum cDNA clone:ddv62m10, 3' ...  1336   0.0    1
(BJ446336) Dictyostelium discoideum cDNA clone:ddv62l09, 3' ...  1336   0.0    1
(BJ443182) Dictyostelium discoideum cDNA clone:ddv52l02, 3' ...  1336   0.0    1
dna update 2008.11.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159157_1(AF159157|pid:none) Hydra vulgaris head-activator bind...    80   1e-13
AB093294_1(AB093294|pid:none) Mus musculus mRNA for mKIAA1329 pr...    69   5e-10
(Q9EPR5) RecName: Full=VPS10 domain-containing receptor SorCS2; ...    69   5e-10
BC156053_1(BC156053|pid:none) Synthetic construct Homo sapiens c...    66   2e-09
AB037750_1(AB037750|pid:none) Homo sapiens mRNA for KIAA1329 pro...    65   4e-09
(Q9UPU3) RecName: Full=VPS10 domain-containing receptor SorCS3; ...    64   1e-08
(Q95209) RecName: Full=Sortilin-related receptor; AltName: Full=...    63   3e-08
AF284755_1(AF284755|pid:none) Mus musculus VPS10 domain receptor...    62   3e-08
(Q9JLC4) RecName: Full=VPS10 domain-containing receptor SorCS1; ...    62   3e-08
AY099453_1(AY099453|pid:none) Homo sapiens VPS10 domain receptor...    60   2e-07
protein update 2009. 7.14
PSORT 

 psg: 0.65  gvh: 0.69  alm: 0.15  top: 0.47  tms: 0.13  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: mitochondrial
	 28.0 %: endoplasmic reticulum
	 16.0 %: plasma membrane
	  8.0 %: extracellular, including cell wall
	  4.0 %: vacuolar
	  4.0 %: Golgi
	  4.0 %: nuclear
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for VHI790 is mit
5' end seq. ID VHI790F
5' end seq. 
>VHI790F.Seq
ATATTATTTTTCTTCACTATCTGTTTATATAAACAAATTGGAGGAAATTATAAAATGAAG
ATTTCATCTATTTTATTTATTTTTATAGCGATTATTGTTGGCTTAGCACTTTCACAAAAT
ACTATTCCAACTTATAAGCAAAACAGCATTAATTGGAAGCAATTTCAACCATTATATACA
AATAAAGATGATTATGTATTAATTGTAGATACAAGATCAAAGAATGTTTTAAAAAGATCA
ACAAATGGTGGTATTGATTGGTCATCAAATGTACTTGATAAACAAGGAAATATTATTTAT
GGTAATGCAGGATATTATCAAAGAGATGATAATATTATGGTTGTAAATTTCCCATCTTAT
GGAAAAACCCAAATTTCAGTATCAAATGATGCAGGTCAAACATTTTCAACCTCAGCAGTT
TTTCCACATAAAGTTGTATCAGTTTCACCACATTTAGATATTGAGGGTTTAGTGATTGCA
CGTTCCGATAATTTCATTTTAATTAGTGAAGATTTTGGTTTAACATGGAACAATGCATCA
TCCAATGGTGATGTTTNNNNNNNNNN
Length of 5' end seq. 566
3' end seq. ID VHI790Z
3' end seq. 
>VHI790Z.Seq
NNNNNNNNNNTCCTTGCGATGATTCCTCAATGCAATCTTATACCACTCGTTGTATTTTAG
GTGAAAAAACAACTTATAGAACTGTTAAACCAAATACCAATTGTTATATGACCCAACAAG
CACAAATTTCAAATAAATATTGTGAATGTACAGTCGAAGATTTTGAATGTGATATTGGTT
ACGAAAGTGCAGACGATAGCAGTTCCGATAATGATGGTTCTACCTCTGGTATTCCATCTG
GATCTTCAGAACAATTGAATTGTCGTAAATCAATTGCTTCACAATATGTTCCAATCACTG
AAGAAAATTGTACACCAGGTCAAACCTATATCAAATCAAAAGGTTTCAGAAGAGTCGCTG
CCACACAATGTGTAGGTGGTGTTAATGCAACTTATTCACCAGAGATTGTCATGTGTCCAT
CAAAAAATTCTTCAAGTGGTGGCAAAGGTTGGATCGCTGGTGTTGTTATTGCTATTCTTG
CTTTAGCTGGTCTTGGTGGTTTTGGTTTCTACGTTTTTAAGAATCCAGATTTCAAACAAA
AATTATTAAAAATGGTTGGTTTTTCAAAGGTCGGTCCAAAATATAGTGTTATCGGTATTA
AACCAAACTCATTAGCTGATGATGAATTTGGTATTGAAGATGATGATGCTCAAATTTTAA
ANATAANATTTACAAGATAACGAAGATTTTTAAAAAAAA
Length of 3' end seq. 699
Connected seq. ID VHI790P
Connected seq. 
>VHI790P.Seq
ATATTATTTTTCTTCACTATCTGTTTATATAAACAAATTGGAGGAAATTATAAAATGAAG
ATTTCATCTATTTTATTTATTTTTATAGCGATTATTGTTGGCTTAGCACTTTCACAAAAT
ACTATTCCAACTTATAAGCAAAACAGCATTAATTGGAAGCAATTTCAACCATTATATACA
AATAAAGATGATTATGTATTAATTGTAGATACAAGATCAAAGAATGTTTTAAAAAGATCA
ACAAATGGTGGTATTGATTGGTCATCAAATGTACTTGATAAACAAGGAAATATTATTTAT
GGTAATGCAGGATATTATCAAAGAGATGATAATATTATGGTTGTAAATTTCCCATCTTAT
GGAAAAACCCAAATTTCAGTATCAAATGATGCAGGTCAAACATTTTCAACCTCAGCAGTT
TTTCCACATAAAGTTGTATCAGTTTCACCACATTTAGATATTGAGGGTTTAGTGATTGCA
CGTTCCGATAATTTCATTTTAATTAGTGAAGATTTTGGTTTAACATGGAACAATGCATCA
TCCAATGGTGATGTTT----------TCCTTGCGATGATTCCTCAATGCAATCTTATACC
ACTCGTTGTATTTTAGGTGAAAAAACAACTTATAGAACTGTTAAACCAAATACCAATTGT
TATATGACCCAACAAGCACAAATTTCAAATAAATATTGTGAATGTACAGTCGAAGATTTT
GAATGTGATATTGGTTACGAAAGTGCAGACGATAGCAGTTCCGATAATGATGGTTCTACC
TCTGGTATTCCATCTGGATCTTCAGAACAATTGAATTGTCGTAAATCAATTGCTTCACAA
TATGTTCCAATCACTGAAGAAAATTGTACACCAGGTCAAACCTATATCAAATCAAAAGGT
TTCAGAAGAGTCGCTGCCACACAATGTGTAGGTGGTGTTAATGCAACTTATTCACCAGAG
ATTGTCATGTGTCCATCAAAAAATTCTTCAAGTGGTGGCAAAGGTTGGATCGCTGGTGTT
GTTATTGCTATTCTTGCTTTAGCTGGTCTTGGTGGTTTTGGTTTCTACGTTTTTAAGAAT
CCAGATTTCAAACAAAAATTATTAAAAATGGTTGGTTTTTCAAAGGTCGGTCCAAAATAT
AGTGTTATCGGTATTAAACCAAACTCATTAGCTGATGATGAATTTGGTATTGAAGATGAT
GATGCTCAAATTTTAAANATAANATTTACAAGATAACGAAGATTTTTAAAAAAAA
Length of connected seq. 1245
Full length Seq ID -
Full length Seq. -
Length of full length seq. -