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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHI771
Library VH
(Link to library)
Clone ID VHI771
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15304-1
Original site URL
Representative seq. ID VHI771P
(Link to Original site)
Representative DNA sequence 
>VHI771 (VHI771Q) /CSM/VH/VHI7-C/VHI771Q.Seq.d/
CTGTTGGCCTACTGGACAAATTTATTTCTCTACAAAGTGATTTCTTTATATGTGTTGATT
GGCACATAGAAATATCTATTTAGAAAATATAAAATGGCTGAAAGACAATCAGCATCATCA
CCAACTCCTTCTTCACCACCACAACAACAACAACAAACACCTCAACAACCACCACAATAT
TTACTAAATTCAAAAAAGAATTTTAAAGTAAAAGTATTAAATGGTAGAGAAGTTGAAAGA
CACCCATTAAATTCAATTACAAAAACAGAGGATACAGGTAAACCAAAACAATCATCATTA
TCATCAAATGCAAGTTCACTTCAATCAGCAGCAGCAGCAGCATCATCATCAACAGCAACA
ACAGATATTGATCCATTAAACAACAATAATAATAATAATACAGATATTGATCCATTAAAT
AATCCATTAGAAAAAAAACATGATCCACTTTCAGAAACAATTGCAACAATGGGTGGATTA
AAATTAATAAAAGAAAATCATTTAACAAATTATGTTGATGAGAATTTTATGCCATGGGAT
ACATTGAAACCATCGATTCTTCAACAATATACCTCTGATGATTCAAATXXXXXXXXXXGC
TTCATTACAATTCCCATCAATTGATGATATCTTTTTAAAGATGAATCTTTATTTAGTCTC
TTCATCTGTGGCTTTACAAAATCAAGCACTCTCTCAAGCCGATGCTTTATTAAAGGCTGC
CATCACTTTTATTCAAGAAATCCCTCCAATCTTGGAGTTTAAACAAGTTAAATCAACTGA
AGATTGGACAATCTCTTATGTCTCTGATTTTATCTCACTTTTAGTTGTAACTCCTGGTCA
TCCTGAAAGTGGTCCTTTCTATTTAGTAAAGGCTCTTTATAAAGTCATTAAAGAATATCA
ATGGGAATCAAGTTCAACTGCTAAATCAAAATTATTTATTCAATTATTATTACTTTGTTC
TTCTTGGGCACAAACTTCATTACCATATCATATTGAAAAAGTTGAATCAAATGATCAATT
ATTTACAGAAGATCCAGAGTTTAATACAGAATTAACAGAATTTTATAATTCATTAATTAA
AGAAATTTTATATGATTTAAATCTTTTGAAAGATGAACCAGATAATTTAACACAGAAAAA
AGTTGGTATCATTTGTATTGATTTAATAAATGCATTATTAAATGTTGGTGAATTAAATAG
TAAGACAGCATCATTAATTTTCAATTTATATAATATGGCAAAGAAAATTATACCATCAAC
CTGTTTCAATGAAATTACATATTTAAAGAATACTCTTGCTTTTATTGGAACTCTGAATCT
AAAAGGGTCAGGATATTTTTAATAAACTTTCACAACAACAATAAGAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
llaywtnlflykvislyvligt*KYLFRKYKMAERQSASSPTPSSPPQQQQQTPQQPPQY
LLNSKKNFKVKVLNGREVERHPLNSITKTEDTGKPKQSSLSSNASSLQSAAAAASSSTAT
TDIDPLNNNNNNNTDIDPLNNPLEKKHDPLSETIATMGGLKLIKENHLTNYVDENFMPWD
TLKPSILQQYTSDDSN---

---ASLQFPSIDDIFLKMNLYLVSSSVALQNQALSQADALLKAAITFIQEIPPILEFKQV
KSTEDWTISYVSDFISLLVVTPGHPESGPFYLVKALYKVIKEYQWESSSTAKSKLFIQLL
LLCSSWAQTSLPYHIEKVESNDQLFTEDPEFNTELTEFYNSLIKEILYDLNLLKDEPDNL
TQKKVGIICIDLINALLNVGELNSKTASLIFNLYNMAKKIIPSTCFNEITYLKNTLAFIG
TLNLKGSGYF**tftttir
Translated Amino Acid sequence (All Frames) 
Frame A:
llaywtnlflykvislyvligt*KYLFRKYKMAERQSASSPTPSSPPQQQQQTPQQPPQY
LLNSKKNFKVKVLNGREVERHPLNSITKTEDTGKPKQSSLSSNASSLQSAAAAASSSTAT
TDIDPLNNNNNNNTDIDPLNNPLEKKHDPLSETIATMGGLKLIKENHLTNYVDENFMPWD
TLKPSILQQYTSDDSN---

---ASLQFPSIDDIFLKMNLYLVSSSVALQNQALSQADALLKAAITFIQEIPPILEFKQV
KSTEDWTISYVSDFISLLVVTPGHPESGPFYLVKALYKVIKEYQWESSSTAKSKLFIQLL
LLCSSWAQTSLPYHIEKVESNDQLFTEDPEFNTELTEFYNSLIKEILYDLNLLKDEPDNL
TQKKVGIICIDLINALLNVGELNSKTASLIFNLYNMAKKIIPSTCFNEITYLKNTLAFIG
TLNLKGSGYF**tftttir

Frame B:
cwptgqiyfstk*flymc*lahrniylenikwlkdnqhhhqlllhhhnnnnkhlnnhhni
y*iqkrilk*ky*mveklkdth*iqlqkqriqvnqnnhhyhqmqvhfnqqqqqhhhqqqq
qilih*ttiiiiiqilih*iih*kknmihfqkqlqqwvd*n**kkii*qimlmrilchgi
h*nhrffnniplmiq---

---lhynshqlmisf*r*ifi*slhlwlykikhslkpmly*rlpsllfkkslqswslnkl
nqlkigqslmslilshf*l*llvilkvvlsi**rlfikslkningnqvqllnqnylfnyy
yfvllghklhyhiilkklnqminylqkiqsliqn*qnfiih*lkkfymi*if*kmnqii*
hrkklvsfvli**mhy*mlvn*ivrqhh*fsiyiiwqrklyhqpvsmklhi*rillllle
l*i*kgqdifnklsqqq*e

Frame C:
vglldkfislqsdfficvdwhieisi*ki*ng*ktisiitnsfftttttttntsttttif
tkfkkef*sksikw*rs*ktpikfnyknrgyr*tktiiiiikckftsisssssiiinsnn
ry*sikqq****yry*sik*sirkkt*stfrnncnngwikinkrksfnklc**efyamgy
ietidsstiyl**fk---

---fitipin**ylfkdeslfslficgftksstlssrcfikgchhfysrnpsnlgv*ts*
in*rldnllcl*fyltfscnswss*kwsflfskgsl*sh*rismgikfnc*ikiiysiii
tlfflgtnfitisy*ks*ik*siiyrrsrv*yrinril*fin*rnfi*fksfer*tr*fn
tekswyhly*fnkciikcw*ik**dsiinfqfi*ygkenytinlfq*nyifkeyscfywn
seskrvriflinfhnnnkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHI771 (VHI771Q) /CSM/VH/VHI7-C/VHI771Q.Seq.d/                       1927   0.0
VHO624 (VHO624Q) /CSM/VH/VHO6-A/VHO624Q.Seq.d/                       1499   0.0
VHI864 (VHI864Q) /CSM/VH/VHI8-C/VHI864Q.Seq.d/                       1497   0.0
SHA683 (SHA683Q) /CSM/SH/SHA6-D/SHA683Q.Seq.d/                       1497   0.0
AHJ346 (AHJ346Q) /CSM/AH/AHJ3-B/AHJ346Q.Seq.d/                       1497   0.0
AHC430 (AHC430Q) /CSM/AH/AHC4-B/AHC430Q.Seq.d/                       1491   0.0
VHO612 (VHO612Q) /CSM/VH/VHO6-A/VHO612Q.Seq.d/                       1483   0.0
VHI487 (VHI487Q) /CSM/VH/VHI4-D/VHI487Q.Seq.d/                       1483   0.0
VHH857 (VHH857Q) /CSM/VH/VHH8-C/VHH857Q.Seq.d/                       1483   0.0
VHH623 (VHH623Q) /CSM/VH/VHH6-A/VHH623Q.Seq.d/                       1483   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ442048) Dictyostelium discoideum cDNA clone:ddv48n17, 3' ...  1524   0.0    1
(BJ445657) Dictyostelium discoideum cDNA clone:ddv60o06, 3' ...  1417   0.0    2
(BJ446315) Dictyostelium discoideum cDNA clone:ddv62h10, 3' ...  1409   0.0    2
(BJ442059) Dictyostelium discoideum cDNA clone:ddv48p16, 3' ...  1409   0.0    3
(BJ403640) Dictyostelium discoideum cDNA clone:dds25e22, 3' ...  1409   0.0    3
(BJ353227) Dictyostelium discoideum cDNA clone:dda49l11, 3' ...  1409   0.0    3
(BJ349106) Dictyostelium discoideum cDNA clone:dda35l08, 3' ...  1409   0.0    2
(BJ352801) Dictyostelium discoideum cDNA clone:dda47o24, 3' ...  1403   0.0    2
(BJ355225) Dictyostelium discoideum cDNA clone:dda56j05, 3' ...  1402   0.0    3
(BJ437480) Dictyostelium discoideum cDNA clone:ddv34l08, 3' ...  1394   0.0    3
dna update 2008.11.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC007154_1(BC007154|pid:none) Mus musculus RIKEN cDNA 9030624J02...   142   2e-32
BC043674_1(BC043674|pid:none) Mus musculus RIKEN cDNA 9030624J02...   142   2e-32
AK095078_1(AK095078|pid:none) Homo sapiens cDNA FLJ37759 fis, cl...   142   4e-32
(Q9H0L7) RecName: Full=UPF0505 protein C16orf62; AltName: Full=E...   141   5e-32
AL136744_1(AL136744|pid:none) Homo sapiens mRNA; cDNA DKFZp434B0...   141   5e-32
AK024693_1(AK024693|pid:none) Homo sapiens cDNA: FLJ21040 fis, c...   141   5e-32
AF461052_1(AF461052|pid:none) Homo sapiens esophageal cancer ass...   141   5e-32
(Q5R8N4) RecName: Full=UPF0505 protein C16orf62 homolog;  &CR859...   141   6e-32
AK050302_1(AK050302|pid:none) Mus musculus adult male liver tumo...   140   8e-32
(Q9VHM2) RecName: Full=UPF0505 protein CG8202;  &AE014297_821(AE...   107   1e-21
protein update 2009. 3.11
PSORT 

 psg: 0.63  gvh: 0.27  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.45  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: mitochondrial
	 16.0 %: cytoplasmic
	 16.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall
	  4.0 %: plasma membrane

>> prediction for VHI771 is mit
5' end seq. ID VHI771F
5' end seq. 
>VHI771F.Seq
CTGTTGGCCTACTGGACAAATTTATTTCTCTACAAAGTGATTTCTTTATATGTGTTGATT
GGCACATAGAAATATCTATTTAGAAAATATAAAATGGCTGAAAGACAATCAGCATCATCA
CCAACTCCTTCTTCACCACCACAACAACAACAACAAACACCTCAACAACCACCACAATAT
TTACTAAATTCAAAAAAGAATTTTAAAGTAAAAGTATTAAATGGTAGAGAAGTTGAAAGA
CACCCATTAAATTCAATTACAAAAACAGAGGATACAGGTAAACCAAAACAATCATCATTA
TCATCAAATGCAAGTTCACTTCAATCAGCAGCAGCAGCAGCATCATCATCAACAGCAACA
ACAGATATTGATCCATTAAACAACAATAATAATAATAATACAGATATTGATCCATTAAAT
AATCCATTAGAAAAAAAACATGATCCACTTTCAGAAACAATTGCAACAATGGGTGGATTA
AAATTAATAAAAGAAAATCATTTAACAAATTATGTTGATGAGAATTTTATGCCATGGGAT
ACATTGAAACCATCGATTCTTCAACAATATACCTCTGATGATTCAAATNNNNNNNNNN
Length of 5' end seq. 598
3' end seq. ID VHI771Z
3' end seq. 
>VHI771Z.Seq
NNNNNNNNNNGCTTCATTACAATTCCCATCAATTGATGATATCTTTTTAAAGATGAATCT
TTATTTAGTCTCTTCATCTGTGGCTTTACAAAATCAAGCACTCTCTCAAGCCGATGCTTT
ATTAAAGGCTGCCATCACTTTTATTCAAGAAATCCCTCCAATCTTGGAGTTTAAACAAGT
TAAATCAACTGAAGATTGGACAATCTCTTATGTCTCTGATTTTATCTCACTTTTAGTTGT
AACTCCTGGTCATCCTGAAAGTGGTCCTTTCTATTTAGTAAAGGCTCTTTATAAAGTCAT
TAAAGAATATCAATGGGAATCAAGTTCAACTGCTAAATCAAAATTATTTATTCAATTATT
ATTACTTTGTTCTTCTTGGGCACAAACTTCATTACCATATCATATTGAAAAAGTTGAATC
AAATGATCAATTATTTACAGAAGATCCAGAGTTTAATACAGAATTAACAGAATTTTATAA
TTCATTAATTAAAGAAATTTTATATGATTTAAATCTTTTGAAAGATGAACCAGATAATTT
AACACAGAAAAAAGTTGGTATCATTTGTATTGATTTAATAAATGCATTATTAAATGTTGG
TGAATTAAATAGTAAGACAGCATCATTAATTTTCAATTTATATAATATGGCAAAGAAAAT
TATACCATCAACCTGTTTCAATGAAATTACATATTTAAAGAATACTCTTGCTTTTATTGG
AACTCTGAATCTAAAAGGGTCAGGATATTTTTAATAAACTTTCACAACAACAATAAGAAA
Length of 3' end seq. 780
Connected seq. ID VHI771P
Connected seq. 
>VHI771P.Seq
CTGTTGGCCTACTGGACAAATTTATTTCTCTACAAAGTGATTTCTTTATATGTGTTGATT
GGCACATAGAAATATCTATTTAGAAAATATAAAATGGCTGAAAGACAATCAGCATCATCA
CCAACTCCTTCTTCACCACCACAACAACAACAACAAACACCTCAACAACCACCACAATAT
TTACTAAATTCAAAAAAGAATTTTAAAGTAAAAGTATTAAATGGTAGAGAAGTTGAAAGA
CACCCATTAAATTCAATTACAAAAACAGAGGATACAGGTAAACCAAAACAATCATCATTA
TCATCAAATGCAAGTTCACTTCAATCAGCAGCAGCAGCAGCATCATCATCAACAGCAACA
ACAGATATTGATCCATTAAACAACAATAATAATAATAATACAGATATTGATCCATTAAAT
AATCCATTAGAAAAAAAACATGATCCACTTTCAGAAACAATTGCAACAATGGGTGGATTA
AAATTAATAAAAGAAAATCATTTAACAAATTATGTTGATGAGAATTTTATGCCATGGGAT
ACATTGAAACCATCGATTCTTCAACAATATACCTCTGATGATTCAAAT----------GC
TTCATTACAATTCCCATCAATTGATGATATCTTTTTAAAGATGAATCTTTATTTAGTCTC
TTCATCTGTGGCTTTACAAAATCAAGCACTCTCTCAAGCCGATGCTTTATTAAAGGCTGC
CATCACTTTTATTCAAGAAATCCCTCCAATCTTGGAGTTTAAACAAGTTAAATCAACTGA
AGATTGGACAATCTCTTATGTCTCTGATTTTATCTCACTTTTAGTTGTAACTCCTGGTCA
TCCTGAAAGTGGTCCTTTCTATTTAGTAAAGGCTCTTTATAAAGTCATTAAAGAATATCA
ATGGGAATCAAGTTCAACTGCTAAATCAAAATTATTTATTCAATTATTATTACTTTGTTC
TTCTTGGGCACAAACTTCATTACCATATCATATTGAAAAAGTTGAATCAAATGATCAATT
ATTTACAGAAGATCCAGAGTTTAATACAGAATTAACAGAATTTTATAATTCATTAATTAA
AGAAATTTTATATGATTTAAATCTTTTGAAAGATGAACCAGATAATTTAACACAGAAAAA
AGTTGGTATCATTTGTATTGATTTAATAAATGCATTATTAAATGTTGGTGAATTAAATAG
TAAGACAGCATCATTAATTTTCAATTTATATAATATGGCAAAGAAAATTATACCATCAAC
CTGTTTCAATGAAATTACATATTTAAAGAATACTCTTGCTTTTATTGGAACTCTGAATCT
AAAAGGGTCAGGATATTTTTAATAAACTTTCACAACAACAATAAGAAA
Length of connected seq. 1358
Full length Seq ID -
Full length Seq. -
Length of full length seq. -